[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    456      0 --:--:-- --:--:-- --:--:--   457

100  3844  100  3844    0     0   9234      0 --:--:-- --:--:-- --:--:--  9234

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
libtk8.6.so: cannot open shared object file: No such file or directory

PySCeS defaults to matplotlib's TKagg backend if not specified                          in the user configuration file, set "matplotlib_backend = <backend>" 
Matplotlib interface loaded (pysces.plt.m)
Pitcon routines available
NLEQ2 routines available
SBML support available
You are using NumPy (2.1.2) with SciPy (1.14.1)
Assimulo CVode available
RateChar is available
Parallel scanner is available

PySCeS environment
******************
pysces.model_dir = /home/FCAM/crbmapi/Pysces/psc
pysces.output_dir = /home/FCAM/crbmapi/Pysces


***********************************************************************
* Welcome to PySCeS (1.2.2) - Python Simulator for Cellular Systems   *
*                http://pysces.sourceforge.net                        *
* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024  *
* Triple-J Group for Molecular Cell Physiology                        *
* Stellenbosch University, ZA and VU University Amsterdam, NL         *
* PySCeS is distributed under the PySCeS (BSD style) licence, see     *
* LICENCE.txt (supplied with this release) for details                *
* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046          *
***********************************************************************
`/root/archive.omex` is not a valid COMBINE/OMEX archive.
  - The SED-ML file at location `./tmp956852` is invalid.
    - Data generator `OBJF_1` is invalid.
      - Variable `OBJF` is invalid.
        - One or more namespaces required for target `/sbml:sbml/sbml:model/fbc:listOfObjectives/fbc:objective[@fbc:id='OBJF']` are not defined. Only the following namespaces are defined for the target: `sbml`.
srun: error: xanadu-67: task 0: Exited with exit code 1
srun: Terminating job step 8561573.1

[0;36m===================================================== Saving log ====================================================[0m
Completed 2.9 KiB/2.9 KiB (34.9 KiB/s) with 1 file(s) remaining
upload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6728b7435a60072d20f48c09/rawLog.txt

[0;36m===================================================== Saving Structured log ==========================================[0m
Completed 2.0 KiB/2.0 KiB (25.5 KiB/s) with 1 file(s) remaining
upload: outputs/log.yml to s3://files.biosimulations.org/simulations/6728b7435a60072d20f48c09/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
