[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Converting OCI blobs to SIF format
INFO:    Starting build...
Getting image source signatures
Copying blob sha256:f0412dfb1aaea4892c13dab6f771bcd79641a4bdcb521ce881f5dcfc0df9a7a5
Copying blob sha256:6e6c21f79a94cfcd8a94e9e627c4385196c175b1cda36e94f4984747ced55f78
Copying blob sha256:f0bae54791394c7f1817bf659851be1f675460111e0381e3a9d41c84b4225518
Copying blob sha256:6faf297c56dce5b78b744c0994a1371433c6ceb74b89918496cff5f4b5881c98
Copying blob sha256:1bd3d33db5e82b6597b2e047d376488d0bc41490a130554db5712f7e78cce45c
Copying blob sha256:6dc2498a14a7e0dcbe9e569c65f9ad9b786f0bc02d4464abc330ed09e48ec684
Copying blob sha256:d0e2a868cb8ba1d1d9cf162bd095846575ce1cf53a471790ed1a89c72b52bace
Copying blob sha256:fea6c5fbde7cc146aa2f598c4eac348a345b4df0ced0602b2887d8f6a0bfd753
Copying blob sha256:0ba2d52ed6e86d173d376a8a16fe63c2e187b05621177bf3dbfdedfb0e8a78c9
Copying blob sha256:b564a9d365bf80c7f72aa6ba1d72b687fe26032d74ee1926e725478ababcd3b8
Copying blob sha256:352b453ff556e3ba71738a4d57f5b0598c2f75f92136684277c32556f80efd80
Copying blob sha256:c9ae35d55cf936b1964aa55acc43e7a1e3d0eaf0090743329bf17b0bbd18760f
Copying blob sha256:2d8cda8691ec3dd7d2e337adc3b357f96a56f4e46fa9f85e4b1d2c6221ca2c26
Copying blob sha256:fab8f8e270e7cfa86fd57a039a62a10f2272407a8c5d3b12896298948e2077c0
Copying blob sha256:bf4401851d8235e5ac282a63bb20e099488b67418da5d14b3c43f52b1891d398
Copying blob sha256:9c5792f43d390307635480ab09a1dcc8dda1c747f7616bbcd66e96e55763f472
Copying blob sha256:88d42a5db43f99001ad3117ee1e6f73ca1882425fce6df43b49a73b223ec7eac
Copying config sha256:fda60e08fc9b9e71a8f9930085a78ebfb2a0416e985384e836c531d66d38ce70
Writing manifest to image destination
Storing signatures
2023/06/27 22:29:06  info unpack layer: sha256:f0412dfb1aaea4892c13dab6f771bcd79641a4bdcb521ce881f5dcfc0df9a7a5
2023/06/27 22:29:06  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:29:06  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/bin} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:29:23  info unpack layer: sha256:6e6c21f79a94cfcd8a94e9e627c4385196c175b1cda36e94f4984747ced55f78
2023/06/27 22:29:23  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:29:23  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/var} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:29:24  info unpack layer: sha256:f0bae54791394c7f1817bf659851be1f675460111e0381e3a9d41c84b4225518
2023/06/27 22:29:24  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:29:24  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/etc} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:30:50  info unpack layer: sha256:6faf297c56dce5b78b744c0994a1371433c6ceb74b89918496cff5f4b5881c98
2023/06/27 22:30:50  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:30:50  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/etc} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:31:46  info unpack layer: sha256:1bd3d33db5e82b6597b2e047d376488d0bc41490a130554db5712f7e78cce45c
2023/06/27 22:31:46  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:31:46  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/etc} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:31:46  info unpack layer: sha256:6dc2498a14a7e0dcbe9e569c65f9ad9b786f0bc02d4464abc330ed09e48ec684
2023/06/27 22:31:46  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:31:46  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:31:46  info unpack layer: sha256:d0e2a868cb8ba1d1d9cf162bd095846575ce1cf53a471790ed1a89c72b52bace
2023/06/27 22:31:46  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:31:46  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/root} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:33:20  info unpack layer: sha256:fea6c5fbde7cc146aa2f598c4eac348a345b4df0ced0602b2887d8f6a0bfd753
2023/06/27 22:33:20  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:33:20  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/root} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:34:02  info unpack layer: sha256:0ba2d52ed6e86d173d376a8a16fe63c2e187b05621177bf3dbfdedfb0e8a78c9
2023/06/27 22:34:02  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:34:02  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:34:09  info unpack layer: sha256:b564a9d365bf80c7f72aa6ba1d72b687fe26032d74ee1926e725478ababcd3b8
2023/06/27 22:34:09  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:34:09  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:34:09  info unpack layer: sha256:352b453ff556e3ba71738a4d57f5b0598c2f75f92136684277c32556f80efd80
2023/06/27 22:34:09  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:34:09  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/poetry} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:36:21  info unpack layer: sha256:c9ae35d55cf936b1964aa55acc43e7a1e3d0eaf0090743329bf17b0bbd18760f
2023/06/27 22:36:21  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:36:21  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:36:23  info unpack layer: sha256:2d8cda8691ec3dd7d2e337adc3b357f96a56f4e46fa9f85e4b1d2c6221ca2c26
2023/06/27 22:36:23  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:36:23  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:36:24  info unpack layer: sha256:fab8f8e270e7cfa86fd57a039a62a10f2272407a8c5d3b12896298948e2077c0
2023/06/27 22:36:24  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:36:24  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:36:24  info unpack layer: sha256:bf4401851d8235e5ac282a63bb20e099488b67418da5d14b3c43f52b1891d398
2023/06/27 22:36:24  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:36:24  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:36:25  info unpack layer: sha256:9c5792f43d390307635480ab09a1dcc8dda1c747f7616bbcd66e96e55763f472
2023/06/27 22:36:25  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:36:25  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
2023/06/27 22:36:25  info unpack layer: sha256:88d42a5db43f99001ad3117ee1e6f73ca1882425fce6df43b49a73b223ec7eac
2023/06/27 22:36:25  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr
2023/06/27 22:36:25  warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed
INFO:    Creating SIF file...
docker: Command recieved::<-i /root/archive.omex -o /root/outputs>
<-i>
Default case selected
VCell shall execute <biosimulations -i /root/archive.omex -o /root/outputs>
 INFO (CLIStandalone:38) - Starting Vcell... []{}
 INFO (PropertyLoader:577) - Can't read propertyFile /usr/lib/jvm/java-8-openjdk-amd64/jre/vcell.properties specified by java home directory []{}
 INFO (PropertyLoader:583) - ServerID=7.3.0.16, SoftwareVersion=7.5.0.45 []{}
 INFO (BiosimulationsCommand:98) - Beginning execution []{}
 INFO (CLIPythonManager:116) - Initializing Python... []{}
 INFO (CLIPythonManager:136) - Python initialization success! []{}
 INFO (ExecuteImpl:119) - Preparing output directory... []{}
ERROR (RunUtils:507) - java.lang.Exception: File '/root/outputs' could not be deleted! []{}
 INFO (ExecutionJob:86) - Executing OMEX archive /root/archive.omex []{}
-----------------------------------------------------------------------------------------------------
 INFO (NativeLib:29) - Loading combinej []{}
 INFO (RunUtils:475) - TempPath Created: /tmp/vcell_temp_176f71e2-2470-4666-b3ef-51b963c9c5115875421453557577860 []{}
 INFO (SedmlJob:107) - Initializing SED-ML document... []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 INFO (SedmlJob:120) - Processing SED-ML: VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml []{}
 INFO (SedmlJob:156) - Found one SED-ML document with 13 model(s), 12 simulation(s), 12 task(s), 12  report(s),  12 plot2D(s), and 0 plot3D(s)
 []{}
 INFO (SedmlJob:161) - Successful translation of SED-ML file : VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml []{}
-----------------------------------------------------------------------------------------------------
 INFO (SedmlJob:165) - Creating pseudo SED-ML for HDF5 conversion... []{}
 INFO (SedmlJob:177) - Creating Biomodel from pseudo SED-ML []{}
 INFO (SedmlJob:238) - Building solvers and starting simulation of all tasks...  []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_0') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_1') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_2') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_3') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_4') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_5') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_6') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_7') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_8') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_9') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_10') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}
 INFO (SEDMLImporter:182) - Task (id='tsk_0_11') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}
taskToSimulationMap: 12
taskToListOfSubTasksMap: 12
taskToVariableMap: 12
topTaskToBaseTask: 12
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@7f5538a1 []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'Sept and McCammon 1 uM'. []{}
 INFO (SolverHandler:481) - Running simulation Sept and McCammon 1 uM, 463 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@2e645fbd []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'Sept and McCammon 2.5 uM'. []{}
 INFO (SolverHandler:481) - Running simulation Sept and McCammon 2.5 uM, 200 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@1e1e9ef3 []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'Sept and McCammon 10 uM'. []{}
 INFO (SolverHandler:481) - Running simulation Sept and McCammon 10 uM, 176 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@31c628e7 []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'This paper 1 uM'. []{}
 INFO (SolverHandler:481) - Running simulation This paper 1 uM, 300 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@58434b19 []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'This paper 2.5 uM'. []{}
 INFO (SolverHandler:481) - Running simulation This paper 2.5 uM, 160 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@7dbe2ebf []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'This paper 10 uM'. []{}
 INFO (SolverHandler:481) - Running simulation This paper 10 uM, 160 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@885e7ff []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '7.5% pyrenyl-actin'. []{}
 INFO (SolverHandler:481) - Running simulation 7.5% pyrenyl-actin, 171 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@4fa9ab6 []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '15% pyrenyl-actin'. []{}
 INFO (SolverHandler:481) - Running simulation 15% pyrenyl-actin, 161 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@a2341c6 []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '25% pyrenyl-actin'. []{}
 INFO (SolverHandler:481) - Running simulation 25% pyrenyl-actin, 147 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@3e3315d9 []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '50% pyrenyl-actin'. []{}
 INFO (SolverHandler:481) - Running simulation 50% pyrenyl-actin, 182 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@74e6094b []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '75% pyrenyl-actin'. []{}
 INFO (SolverHandler:481) - Running simulation 75% pyrenyl-actin, 154 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@5cf3157b []{}
 INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}
 INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '100% pyrenyl-actin'. []{}
 INFO (SolverHandler:481) - Running simulation 100% pyrenyl-actin, 157 ms []{}
-----------------------------------------------------------------------------------------------------
 INFO (SolverHandler:594) - Ran 12 simulation jobs for 1 biomodels. []{}
 INFO (SedmlJob:273) - Generating outputs...  []{}
 INFO (SedmlJob:327) - Generating CSV file...  []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d_Sept_and_McCammon_1_uM` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d_Sept_and_McCammon_2_5_uM` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d_Sept_and_McCammon_10_uM` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d_This_paper_1_uM` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d_This_paper_2_5_uM` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d_This_paper_10_uM` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d__7_5__pyrenyl_actin` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d__15__pyrenyl_actin` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d__25__pyrenyl_actin` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d__50__pyrenyl_actin` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d__75__pyrenyl_actin` while CSV generation. []{}
 INFO (RunUtils:194) - Ignoring unsupported output `plot2d__100__pyrenyl_actin` while CSV generation. []{}
 INFO (RunUtils:200) - Generating report `report_Sept_and_McCammon_1_uM`. []{}
 INFO (RunUtils:380) - created csv file for report report_Sept_and_McCammon_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_1_uM.csv []{}
 INFO (RunUtils:200) - Generating report `report_Sept_and_McCammon_2_5_uM`. []{}
 INFO (RunUtils:380) - created csv file for report report_Sept_and_McCammon_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_2_5_uM.csv []{}
 INFO (RunUtils:200) - Generating report `report_Sept_and_McCammon_10_uM`. []{}
 INFO (RunUtils:380) - created csv file for report report_Sept_and_McCammon_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_10_uM.csv []{}
 INFO (RunUtils:200) - Generating report `report_This_paper_1_uM`. []{}
 INFO (RunUtils:380) - created csv file for report report_This_paper_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_1_uM.csv []{}
 INFO (RunUtils:200) - Generating report `report_This_paper_2_5_uM`. []{}
 INFO (RunUtils:380) - created csv file for report report_This_paper_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM.csv []{}
 INFO (RunUtils:200) - Generating report `report_This_paper_10_uM`. []{}
 INFO (RunUtils:380) - created csv file for report report_This_paper_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_10_uM.csv []{}
 INFO (RunUtils:200) - Generating report `report__7_5__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report report__7_5__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `report__15__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report report__15__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `report__25__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report report__25__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `report__50__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report report__50__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `report__75__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report report__75__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `report__100__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report report__100__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d_Sept_and_McCammon_1_uM`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d_Sept_and_McCammon_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_Sept_and_McCammon_1_uM.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d_Sept_and_McCammon_2_5_uM`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d_Sept_and_McCammon_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_Sept_and_McCammon_2_5_uM.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d_Sept_and_McCammon_10_uM`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d_Sept_and_McCammon_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_Sept_and_McCammon_10_uM.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d_This_paper_1_uM`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d_This_paper_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_This_paper_1_uM.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d_This_paper_2_5_uM`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d_This_paper_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_This_paper_2_5_uM.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d_This_paper_10_uM`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d_This_paper_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_This_paper_10_uM.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d__7_5__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d__7_5__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__7_5__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d__15__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d__15__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__15__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d__25__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d__25__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__25__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d__50__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d__50__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__50__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d__75__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d__75__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__75__pyrenyl_actin.csv []{}
 INFO (RunUtils:200) - Generating report `__plot__plot2d__100__pyrenyl_actin`. []{}
 INFO (RunUtils:380) - created csv file for report __plot__plot2d__100__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__100__pyrenyl_actin.csv []{}
 INFO (SedmlJob:349) - Generating Plots...  []{}
 WARN (CLIPythonManager:78) - Using old style python invocation! []{}
 WARN (CLIPythonManager:250) - Temp out file didn't delete properly []{}
 WARN (CLIPythonManager:251) - Temp error file didn't delete properly []{}
 INFO (SedmlJob:361) - Generating HDF5 file...  []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_Sept_and_McCammon_1_uM` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_Sept_and_McCammon_2_5_uM` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_Sept_and_McCammon_10_uM` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_This_paper_1_uM` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_This_paper_2_5_uM` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_This_paper_10_uM` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__7_5__pyrenyl_actin` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__15__pyrenyl_actin` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__25__pyrenyl_actin` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__50__pyrenyl_actin` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__75__pyrenyl_actin` while CSV generation. []{}
 INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__100__pyrenyl_actin` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_Sept_and_McCammon_1_uM` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_Sept_and_McCammon_2_5_uM` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_Sept_and_McCammon_10_uM` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_This_paper_1_uM` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_This_paper_2_5_uM` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_This_paper_10_uM` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__7_5__pyrenyl_actin` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__15__pyrenyl_actin` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__25__pyrenyl_actin` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__50__pyrenyl_actin` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__75__pyrenyl_actin` while CSV generation. []{}
 INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__100__pyrenyl_actin` while CSV generation. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}
 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}
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 WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}
 INFO (SedmlJob:313) - Archiving result files []{}
 INFO (RunUtils:449) - Archiving resultant PDF files to `plots.zip`. []{}
 INFO (RunUtils:449) - Archiving resultant CSV files to `reports.zip`. []{}
 INFO (SedmlJob:320) - SED-ML : VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml successfully completed []{}
 INFO (ExecutionJob:143) - Processing of SedML succeeded.
org.vcell.cli.run.SedmlStatistics@53c6f96d []{}
 INFO (NativeLib:29) - Loading jhdf5 []{}
 INFO (Hdf5Writer:42) - Creating hdf5 file `reports.h5` in/root/outputs []{}
 INFO (Hdf5Writer:108) - HDF5 file successfully written to. []{}
 INFO (ExecutionJob:172) - Omex archive.omex processing completed (61s) []{}

[0;36m===================================================== Saving log ====================================================[0m
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upload: outputs/log.yml to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
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