[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    461      0 --:--:-- --:--:-- --:--:--   461

100  100k  100  100k    0     0   228k      0 --:--:-- --:--:-- --:--:--  228k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive may be invalid.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 43 may be invalid.
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        - XPath could not be validated.
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      - Change 48 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 51 may be invalid.
        - XPath could not be validated.
      - Change 52 may be invalid.
        - XPath could not be validated.
      - Change 53 may be invalid.
        - XPath could not be validated.
      - Change 54 may be invalid.
        - XPath could not be validated.
      - Change 55 may be invalid.
        - XPath could not be validated.
      - Change 56 may be invalid.
        - XPath could not be validated.
      - Change 57 may be invalid.
        - XPath could not be validated.
      - Change 58 may be invalid.
        - XPath could not be validated.
      - Change 59 may be invalid.
        - XPath could not be validated.
      - Change 60 may be invalid.
        - XPath could not be validated.
      - Change 61 may be invalid.
        - XPath could not be validated.
      - Change 62 may be invalid.
        - XPath could not be validated.
      - Change 63 may be invalid.
        - XPath could not be validated.
      - Change 64 may be invalid.
        - XPath could not be validated.
      - Change 65 may be invalid.
        - XPath could not be validated.
      - Change 66 may be invalid.
        - XPath could not be validated.
      - Change 67 may be invalid.
        - XPath could not be validated.
      - Change 68 may be invalid.
        - XPath could not be validated.
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      - Change 71 may be invalid.
        - XPath could not be validated.
      - Change 72 may be invalid.
        - XPath could not be validated.
      - Change 73 may be invalid.
        - XPath could not be validated.
      - Change 74 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_MPF_variable_MPF` may be invalid.
    - Variable `value_component_MPF_variable_MPF` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_preMPF` may be invalid.
    - Variable `value_component_preMPF_variable_preMPF` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_Ste9` may be invalid.
    - Variable `value_component_Ste9_variable_Ste9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_Jste9r` may be invalid.
    - Variable `value_component_Ste9_variable_Jste9r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_Jste9` may be invalid.
    - Variable `value_component_Ste9_variable_Jste9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mik1_variable_Mik1` may be invalid.
    - Variable `value_component_Mik1_variable_Mik1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mik1_variable_Jmikr` may be invalid.
    - Variable `value_component_Mik1_variable_Jmikr` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mik1_variable_Jmik` may be invalid.
    - Variable `value_component_Mik1_variable_Jmik` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Wee1_variable_Wee1` may be invalid.
    - Variable `value_component_Wee1_variable_Wee1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Wee1_variable_Jweer` may be invalid.
    - Variable `value_component_Wee1_variable_Jweer` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Wee1_variable_Jwee` may be invalid.
    - Variable `value_component_Wee1_variable_Jwee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cdc25_variable_Cdc25` may be invalid.
    - Variable `value_component_Cdc25_variable_Cdc25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cdc25_variable_J25` may be invalid.
    - Variable `value_component_Cdc25_variable_J25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cdc25_variable_J25r` may be invalid.
    - Variable `value_component_Cdc25_variable_J25r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1_variable_Slp1` may be invalid.
    - Variable `value_component_Slp1_variable_Slp1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1_a_variable_Slp1_a` may be invalid.
    - Variable `value_component_Slp1_a_variable_Slp1_a` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Inh_variable_Inh` may be invalid.
    - Variable `value_component_Inh_variable_Inh` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PI_variable_PI` may be invalid.
    - Variable `value_component_PI_variable_PI` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CRP_variable_CRP` may be invalid.
    - Variable `value_component_CRP_variable_CRP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CR_variable_CR` may be invalid.
    - Variable `value_component_CR_variable_CR` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Rum1_variable_Rum1` may be invalid.
    - Variable `value_component_Rum1_variable_Rum1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Rum1P_variable_Rum1P` may be invalid.
    - Variable `value_component_Rum1P_variable_Rum1P` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_mass_variable_mass` may be invalid.
    - Variable `value_component_mass_variable_mass` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_mass_variable_mu` may be invalid.
    - Variable `value_component_mass_variable_mu` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_R_dna_variable_R_dna` may be invalid.
    - Variable `value_component_R_dna_variable_R_dna` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_R_dna_variable_K` may be invalid.
    - Variable `value_component_R_dna_variable_K` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_R_dna_variable_Y` may be invalid.
    - Variable `value_component_R_dna_variable_Y` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_MPF_a_variable_MPF_a` may be invalid.
    - Variable `value_component_MPF_a_variable_MPF_a` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PP_variable_PP` may be invalid.
    - Variable `value_component_PP_variable_PP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ratio_variable_ratio` may be invalid.
    - Variable `value_component_ratio_variable_ratio` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k1` may be invalid.
    - Variable `value_component_rate_constants_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k2` may be invalid.
    - Variable `value_component_rate_constants_variable_k2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k2c` may be invalid.
    - Variable `value_component_rate_constants_variable_k2c` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k3` may be invalid.
    - Variable `value_component_rate_constants_variable_k3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k4` may be invalid.
    - Variable `value_component_rate_constants_variable_k4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k5` may be invalid.
    - Variable `value_component_rate_constants_variable_k5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k6` may be invalid.
    - Variable `value_component_rate_constants_variable_k6` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k6_` may be invalid.
    - Variable `value_component_rate_constants_variable_k6_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kwee` may be invalid.
    - Variable `value_component_rate_constants_variable_kwee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kc25` may be invalid.
    - Variable `value_component_rate_constants_variable_kc25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kp` may be invalid.
    - Variable `value_component_rate_constants_variable_kp` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kpp_` may be invalid.
    - Variable `value_component_rate_constants_variable_kpp_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kpp` may be invalid.
    - Variable `value_component_rate_constants_variable_kpp` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kj` may be invalid.
    - Variable `value_component_rate_constants_variable_kj` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kjr` may be invalid.
    - Variable `value_component_rate_constants_variable_kjr` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kste9` may be invalid.
    - Variable `value_component_rate_constants_variable_kste9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kste9r` may be invalid.
    - Variable `value_component_rate_constants_variable_kste9r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kste9r_` may be invalid.
    - Variable `value_component_rate_constants_variable_kste9r_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_km` may be invalid.
    - Variable `value_component_rate_constants_variable_km` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kmr` may be invalid.
    - Variable `value_component_rate_constants_variable_kmr` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kmr_` may be invalid.
    - Variable `value_component_rate_constants_variable_kmr_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kw` may be invalid.
    - Variable `value_component_rate_constants_variable_kw` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kwr` may be invalid.
    - Variable `value_component_rate_constants_variable_kwr` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kwr_` may be invalid.
    - Variable `value_component_rate_constants_variable_kwr_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k25` may be invalid.
    - Variable `value_component_rate_constants_variable_k25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k25r` may be invalid.
    - Variable `value_component_rate_constants_variable_k25r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_k25r_` may be invalid.
    - Variable `value_component_rate_constants_variable_k25r_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kas` may be invalid.
    - Variable `value_component_rate_constants_variable_kas` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kad` may be invalid.
    - Variable `value_component_rate_constants_variable_kad` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kaa` may be invalid.
    - Variable `value_component_rate_constants_variable_kaa` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kaa_` may be invalid.
    - Variable `value_component_rate_constants_variable_kaa_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kai` may be invalid.
    - Variable `value_component_rate_constants_variable_kai` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_ki` may be invalid.
    - Variable `value_component_rate_constants_variable_ki` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_kir` may be invalid.
    - Variable `value_component_rate_constants_variable_kir` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_ks` may be invalid.
    - Variable `value_component_rate_constants_variable_ks` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V2_` may be invalid.
    - Variable `value_component_rate_constants_variable_V2_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V2` may be invalid.
    - Variable `value_component_rate_constants_variable_V2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V2c` may be invalid.
    - Variable `value_component_rate_constants_variable_V2c` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V2c_` may be invalid.
    - Variable `value_component_rate_constants_variable_V2c_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_Vwee` may be invalid.
    - Variable `value_component_rate_constants_variable_Vwee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_Vwee_` may be invalid.
    - Variable `value_component_rate_constants_variable_Vwee_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_Vmik` may be invalid.
    - Variable `value_component_rate_constants_variable_Vmik` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_Vmik_` may be invalid.
    - Variable `value_component_rate_constants_variable_Vmik_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V25` may be invalid.
    - Variable `value_component_rate_constants_variable_V25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V25_` may be invalid.
    - Variable `value_component_rate_constants_variable_V25_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_Vpyp` may be invalid.
    - Variable `value_component_rate_constants_variable_Vpyp` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V4` may be invalid.
    - Variable `value_component_rate_constants_variable_V4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_V4_` may be invalid.
    - Variable `value_component_rate_constants_variable_V4_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_rate_constants_variable_Pyp3` may be invalid.
    - Variable `value_component_rate_constants_variable_Pyp3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_dimensionless_constants_variable_SK` may be invalid.
    - Variable `value_component_dimensionless_constants_variable_SK` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_dimensionless_constants_variable_epsilon` may be invalid.
    - Variable `value_component_dimensionless_constants_variable_epsilon` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_dimensionless_constants_variable_epsilon_p` may be invalid.
    - Variable `value_component_dimensionless_constants_variable_epsilon_p` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive may be invalid.
  - The SED-ML file at location `simulation_0.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
        - Change 9 may be invalid.
          - XPath could not be validated.
        - Change 10 may be invalid.
          - XPath could not be validated.
        - Change 11 may be invalid.
          - XPath could not be validated.
        - Change 12 may be invalid.
          - XPath could not be validated.
        - Change 13 may be invalid.
          - XPath could not be validated.
        - Change 14 may be invalid.
          - XPath could not be validated.
        - Change 15 may be invalid.
          - XPath could not be validated.
        - Change 16 may be invalid.
          - XPath could not be validated.
        - Change 17 may be invalid.
          - XPath could not be validated.
        - Change 18 may be invalid.
          - XPath could not be validated.
        - Change 19 may be invalid.
          - XPath could not be validated.
        - Change 20 may be invalid.
          - XPath could not be validated.
        - Change 21 may be invalid.
          - XPath could not be validated.
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    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_MPF_variable_MPF` may be invalid.
      - Variable `value_component_MPF_variable_MPF` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_preMPF` may be invalid.
      - Variable `value_component_preMPF_variable_preMPF` may be invalid.
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    - Data generator `data_generator_value_component_Ste9_variable_Ste9` may be invalid.
      - Variable `value_component_Ste9_variable_Ste9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_Jste9r` may be invalid.
      - Variable `value_component_Ste9_variable_Jste9r` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_Jste9` may be invalid.
      - Variable `value_component_Ste9_variable_Jste9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mik1_variable_Mik1` may be invalid.
      - Variable `value_component_Mik1_variable_Mik1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mik1_variable_Jmikr` may be invalid.
      - Variable `value_component_Mik1_variable_Jmikr` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mik1_variable_Jmik` may be invalid.
      - Variable `value_component_Mik1_variable_Jmik` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Wee1_variable_Wee1` may be invalid.
      - Variable `value_component_Wee1_variable_Wee1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Wee1_variable_Jweer` may be invalid.
      - Variable `value_component_Wee1_variable_Jweer` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Wee1_variable_Jwee` may be invalid.
      - Variable `value_component_Wee1_variable_Jwee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cdc25_variable_Cdc25` may be invalid.
      - Variable `value_component_Cdc25_variable_Cdc25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cdc25_variable_J25` may be invalid.
      - Variable `value_component_Cdc25_variable_J25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cdc25_variable_J25r` may be invalid.
      - Variable `value_component_Cdc25_variable_J25r` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1_variable_Slp1` may be invalid.
      - Variable `value_component_Slp1_variable_Slp1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1_a_variable_Slp1_a` may be invalid.
      - Variable `value_component_Slp1_a_variable_Slp1_a` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Inh_variable_Inh` may be invalid.
      - Variable `value_component_Inh_variable_Inh` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PI_variable_PI` may be invalid.
      - Variable `value_component_PI_variable_PI` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CRP_variable_CRP` may be invalid.
      - Variable `value_component_CRP_variable_CRP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CR_variable_CR` may be invalid.
      - Variable `value_component_CR_variable_CR` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Rum1_variable_Rum1` may be invalid.
      - Variable `value_component_Rum1_variable_Rum1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Rum1P_variable_Rum1P` may be invalid.
      - Variable `value_component_Rum1P_variable_Rum1P` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_mass_variable_mass` may be invalid.
      - Variable `value_component_mass_variable_mass` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_mass_variable_mu` may be invalid.
      - Variable `value_component_mass_variable_mu` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_R_dna_variable_R_dna` may be invalid.
      - Variable `value_component_R_dna_variable_R_dna` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_R_dna_variable_K` may be invalid.
      - Variable `value_component_R_dna_variable_K` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_R_dna_variable_Y` may be invalid.
      - Variable `value_component_R_dna_variable_Y` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_MPF_a_variable_MPF_a` may be invalid.
      - Variable `value_component_MPF_a_variable_MPF_a` may be invalid.
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    - Data generator `data_generator_value_component_PP_variable_PP` may be invalid.
      - Variable `value_component_PP_variable_PP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ratio_variable_ratio` may be invalid.
      - Variable `value_component_ratio_variable_ratio` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k1` may be invalid.
      - Variable `value_component_rate_constants_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k2` may be invalid.
      - Variable `value_component_rate_constants_variable_k2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k2c` may be invalid.
      - Variable `value_component_rate_constants_variable_k2c` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k3` may be invalid.
      - Variable `value_component_rate_constants_variable_k3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k4` may be invalid.
      - Variable `value_component_rate_constants_variable_k4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k5` may be invalid.
      - Variable `value_component_rate_constants_variable_k5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k6` may be invalid.
      - Variable `value_component_rate_constants_variable_k6` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k6_` may be invalid.
      - Variable `value_component_rate_constants_variable_k6_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kwee` may be invalid.
      - Variable `value_component_rate_constants_variable_kwee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kc25` may be invalid.
      - Variable `value_component_rate_constants_variable_kc25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kp` may be invalid.
      - Variable `value_component_rate_constants_variable_kp` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kpp_` may be invalid.
      - Variable `value_component_rate_constants_variable_kpp_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kpp` may be invalid.
      - Variable `value_component_rate_constants_variable_kpp` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kj` may be invalid.
      - Variable `value_component_rate_constants_variable_kj` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kjr` may be invalid.
      - Variable `value_component_rate_constants_variable_kjr` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kste9` may be invalid.
      - Variable `value_component_rate_constants_variable_kste9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kste9r` may be invalid.
      - Variable `value_component_rate_constants_variable_kste9r` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kste9r_` may be invalid.
      - Variable `value_component_rate_constants_variable_kste9r_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_km` may be invalid.
      - Variable `value_component_rate_constants_variable_km` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kmr` may be invalid.
      - Variable `value_component_rate_constants_variable_kmr` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kmr_` may be invalid.
      - Variable `value_component_rate_constants_variable_kmr_` may be invalid.
        - XPath could not be validated.
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      - Variable `value_component_rate_constants_variable_kw` may be invalid.
        - XPath could not be validated.
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      - Variable `value_component_rate_constants_variable_kwr` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kwr_` may be invalid.
      - Variable `value_component_rate_constants_variable_kwr_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k25` may be invalid.
      - Variable `value_component_rate_constants_variable_k25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_k25r` may be invalid.
      - Variable `value_component_rate_constants_variable_k25r` may be invalid.
        - XPath could not be validated.
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      - Variable `value_component_rate_constants_variable_k25r_` may be invalid.
        - XPath could not be validated.
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      - Variable `value_component_rate_constants_variable_kas` may be invalid.
        - XPath could not be validated.
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      - Variable `value_component_rate_constants_variable_kad` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kaa` may be invalid.
      - Variable `value_component_rate_constants_variable_kaa` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kaa_` may be invalid.
      - Variable `value_component_rate_constants_variable_kaa_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kai` may be invalid.
      - Variable `value_component_rate_constants_variable_kai` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_ki` may be invalid.
      - Variable `value_component_rate_constants_variable_ki` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_kir` may be invalid.
      - Variable `value_component_rate_constants_variable_kir` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_ks` may be invalid.
      - Variable `value_component_rate_constants_variable_ks` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V2_` may be invalid.
      - Variable `value_component_rate_constants_variable_V2_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V2` may be invalid.
      - Variable `value_component_rate_constants_variable_V2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V2c` may be invalid.
      - Variable `value_component_rate_constants_variable_V2c` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V2c_` may be invalid.
      - Variable `value_component_rate_constants_variable_V2c_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_Vwee` may be invalid.
      - Variable `value_component_rate_constants_variable_Vwee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_Vwee_` may be invalid.
      - Variable `value_component_rate_constants_variable_Vwee_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_Vmik` may be invalid.
      - Variable `value_component_rate_constants_variable_Vmik` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_Vmik_` may be invalid.
      - Variable `value_component_rate_constants_variable_Vmik_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V25` may be invalid.
      - Variable `value_component_rate_constants_variable_V25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V25_` may be invalid.
      - Variable `value_component_rate_constants_variable_V25_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_Vpyp` may be invalid.
      - Variable `value_component_rate_constants_variable_Vpyp` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V4` may be invalid.
      - Variable `value_component_rate_constants_variable_V4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_V4_` may be invalid.
      - Variable `value_component_rate_constants_variable_V4_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_rate_constants_variable_Pyp3` may be invalid.
      - Variable `value_component_rate_constants_variable_Pyp3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_dimensionless_constants_variable_SK` may be invalid.
      - Variable `value_component_dimensionless_constants_variable_SK` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_dimensionless_constants_variable_epsilon` may be invalid.
      - Variable `value_component_dimensionless_constants_variable_epsilon` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_dimensionless_constants_variable_epsilon_p` may be invalid.
      - Variable `value_component_dimensionless_constants_variable_epsilon_p` may be invalid.
        - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:
  simulation_0.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 83 data sets

Executing SED-ML file 1: simulation_0.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m===================================================== Saving log ====================================================[0m
Completed 48.2 KiB/48.2 KiB (426.1 KiB/s) with 1 file(s) remaining
upload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261782fabe612c540c69356/rawLog.txt
Completed 67.6 KiB/67.6 KiB (694.3 KiB/s) with 1 file(s) remaining
upload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261782fabe612c540c69356/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
