[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    468      0 --:--:-- --:--:-- --:--:--   468

100  301k  100  301k    0     0   658k      0 --:--:-- --:--:-- --:--:--  658k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive may be invalid.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
      - Change 6 may be invalid.
        - XPath could not be validated.
      - Change 7 may be invalid.
        - XPath could not be validated.
      - Change 8 may be invalid.
        - XPath could not be validated.
      - Change 9 may be invalid.
        - XPath could not be validated.
      - Change 10 may be invalid.
        - XPath could not be validated.
      - Change 11 may be invalid.
        - XPath could not be validated.
      - Change 12 may be invalid.
        - XPath could not be validated.
      - Change 13 may be invalid.
        - XPath could not be validated.
      - Change 14 may be invalid.
        - XPath could not be validated.
      - Change 15 may be invalid.
        - XPath could not be validated.
      - Change 16 may be invalid.
        - XPath could not be validated.
      - Change 17 may be invalid.
        - XPath could not be validated.
      - Change 18 may be invalid.
        - XPath could not be validated.
      - Change 19 may be invalid.
        - XPath could not be validated.
      - Change 20 may be invalid.
        - XPath could not be validated.
      - Change 21 may be invalid.
        - XPath could not be validated.
      - Change 22 may be invalid.
        - XPath could not be validated.
      - Change 23 may be invalid.
        - XPath could not be validated.
      - Change 24 may be invalid.
        - XPath could not be validated.
      - Change 25 may be invalid.
        - XPath could not be validated.
      - Change 26 may be invalid.
        - XPath could not be validated.
      - Change 27 may be invalid.
        - XPath could not be validated.
      - Change 28 may be invalid.
        - XPath could not be validated.
      - Change 29 may be invalid.
        - XPath could not be validated.
      - Change 30 may be invalid.
        - XPath could not be validated.
      - Change 31 may be invalid.
        - XPath could not be validated.
      - Change 32 may be invalid.
        - XPath could not be validated.
      - Change 33 may be invalid.
        - XPath could not be validated.
      - Change 34 may be invalid.
        - XPath could not be validated.
      - Change 35 may be invalid.
        - XPath could not be validated.
      - Change 36 may be invalid.
        - XPath could not be validated.
      - Change 37 may be invalid.
        - XPath could not be validated.
      - Change 38 may be invalid.
        - XPath could not be validated.
      - Change 39 may be invalid.
        - XPath could not be validated.
      - Change 40 may be invalid.
        - XPath could not be validated.
      - Change 41 may be invalid.
        - XPath could not be validated.
      - Change 42 may be invalid.
        - XPath could not be validated.
      - Change 43 may be invalid.
        - XPath could not be validated.
      - Change 44 may be invalid.
        - XPath could not be validated.
      - Change 45 may be invalid.
        - XPath could not be validated.
      - Change 46 may be invalid.
        - XPath could not be validated.
      - Change 47 may be invalid.
        - XPath could not be validated.
      - Change 48 may be invalid.
        - XPath could not be validated.
      - Change 49 may be invalid.
        - XPath could not be validated.
      - Change 50 may be invalid.
        - XPath could not be validated.
      - Change 51 may be invalid.
        - XPath could not be validated.
      - Change 52 may be invalid.
        - XPath could not be validated.
      - Change 53 may be invalid.
        - XPath could not be validated.
      - Change 54 may be invalid.
        - XPath could not be validated.
      - Change 55 may be invalid.
        - XPath could not be validated.
      - Change 56 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cdc13T_variable_Cdc13T` may be invalid.
    - Variable `value_component_Cdc13T_variable_Cdc13T` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cdc13T_variable_k1` may be invalid.
    - Variable `value_component_Cdc13T_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_preMPF` may be invalid.
    - Variable `value_component_preMPF_variable_preMPF` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_kwee` may be invalid.
    - Variable `value_component_preMPF_variable_kwee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_kwee_` may be invalid.
    - Variable `value_component_preMPF_variable_kwee_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_kwee__` may be invalid.
    - Variable `value_component_preMPF_variable_kwee__` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Vawee` may be invalid.
    - Variable `value_component_preMPF_variable_Vawee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Viwee` may be invalid.
    - Variable `value_component_preMPF_variable_Viwee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Jawee` may be invalid.
    - Variable `value_component_preMPF_variable_Jawee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Jiwee` may be invalid.
    - Variable `value_component_preMPF_variable_Jiwee` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_k25` may be invalid.
    - Variable `value_component_preMPF_variable_k25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_k25_` may be invalid.
    - Variable `value_component_preMPF_variable_k25_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_k25__` may be invalid.
    - Variable `value_component_preMPF_variable_k25__` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Va25` may be invalid.
    - Variable `value_component_preMPF_variable_Va25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Vi25` may be invalid.
    - Variable `value_component_preMPF_variable_Vi25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Ja25` may be invalid.
    - Variable `value_component_preMPF_variable_Ja25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_preMPF_variable_Ji25` may be invalid.
    - Variable `value_component_preMPF_variable_Ji25` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_Ste9` may be invalid.
    - Variable `value_component_Ste9_variable_Ste9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_k3_` may be invalid.
    - Variable `value_component_Ste9_variable_k3_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_k3__` may be invalid.
    - Variable `value_component_Ste9_variable_k3__` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_k4` may be invalid.
    - Variable `value_component_Ste9_variable_k4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_k4_` may be invalid.
    - Variable `value_component_Ste9_variable_k4_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_J3` may be invalid.
    - Variable `value_component_Ste9_variable_J3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ste9_variable_J4` may be invalid.
    - Variable `value_component_Ste9_variable_J4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1T_variable_Slp1T` may be invalid.
    - Variable `value_component_Slp1T_variable_Slp1T` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1T_variable_k5_` may be invalid.
    - Variable `value_component_Slp1T_variable_k5_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1T_variable_k5__` may be invalid.
    - Variable `value_component_Slp1T_variable_k5__` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1T_variable_J5` may be invalid.
    - Variable `value_component_Slp1T_variable_J5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1_variable_Slp1` may be invalid.
    - Variable `value_component_Slp1_variable_Slp1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1_variable_k7` may be invalid.
    - Variable `value_component_Slp1_variable_k7` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1_variable_k8` may be invalid.
    - Variable `value_component_Slp1_variable_k8` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1_variable_J7` may be invalid.
    - Variable `value_component_Slp1_variable_J7` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Slp1_variable_J8` may be invalid.
    - Variable `value_component_Slp1_variable_J8` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IEP_variable_IEP` may be invalid.
    - Variable `value_component_IEP_variable_IEP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IEP_variable_k9` may be invalid.
    - Variable `value_component_IEP_variable_k9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IEP_variable_k10` may be invalid.
    - Variable `value_component_IEP_variable_k10` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IEP_variable_J9` may be invalid.
    - Variable `value_component_IEP_variable_J9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IEP_variable_J10` may be invalid.
    - Variable `value_component_IEP_variable_J10` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Rum1T_variable_Rum1T` may be invalid.
    - Variable `value_component_Rum1T_variable_Rum1T` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Rum1T_variable_k11` may be invalid.
    - Variable `value_component_Rum1T_variable_k11` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Rum1T_variable_k12` may be invalid.
    - Variable `value_component_Rum1T_variable_k12` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Rum1T_variable_k12_` may be invalid.
    - Variable `value_component_Rum1T_variable_k12_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Rum1T_variable_k12__` may be invalid.
    - Variable `value_component_Rum1T_variable_k12__` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_SK_variable_SK` may be invalid.
    - Variable `value_component_SK_variable_SK` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_SK_variable_k13` may be invalid.
    - Variable `value_component_SK_variable_k13` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_SK_variable_k14` may be invalid.
    - Variable `value_component_SK_variable_k14` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_M_variable_M` may be invalid.
    - Variable `value_component_M_variable_M` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_M_variable_mu` may be invalid.
    - Variable `value_component_M_variable_mu` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Trimer_variable_Trimer` may be invalid.
    - Variable `value_component_Trimer_variable_Trimer` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Trimer_variable_sum` may be invalid.
    - Variable `value_component_Trimer_variable_sum` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Trimer_variable_Kdiss` may be invalid.
    - Variable `value_component_Trimer_variable_Kdiss` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_MPF_variable_MPF` may be invalid.
    - Variable `value_component_MPF_variable_MPF` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TF_variable_TF` may be invalid.
    - Variable `value_component_TF_variable_TF` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TF_variable_k15` may be invalid.
    - Variable `value_component_TF_variable_k15` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TF_variable_k16_` may be invalid.
    - Variable `value_component_TF_variable_k16_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TF_variable_k16__` may be invalid.
    - Variable `value_component_TF_variable_k16__` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TF_variable_J15` may be invalid.
    - Variable `value_component_TF_variable_J15` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TF_variable_J16` may be invalid.
    - Variable `value_component_TF_variable_J16` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_kinetic_parameters_variable_k2_` may be invalid.
    - Variable `value_component_kinetic_parameters_variable_k2_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_kinetic_parameters_variable_k2__` may be invalid.
    - Variable `value_component_kinetic_parameters_variable_k2__` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_kinetic_parameters_variable_k2___` may be invalid.
    - Variable `value_component_kinetic_parameters_variable_k2___` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_kinetic_parameters_variable_k6` may be invalid.
    - Variable `value_component_kinetic_parameters_variable_k6` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive may be invalid.
  - The SED-ML file at location `simulation_0.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
        - Change 9 may be invalid.
          - XPath could not be validated.
        - Change 10 may be invalid.
          - XPath could not be validated.
        - Change 11 may be invalid.
          - XPath could not be validated.
        - Change 12 may be invalid.
          - XPath could not be validated.
        - Change 13 may be invalid.
          - XPath could not be validated.
        - Change 14 may be invalid.
          - XPath could not be validated.
        - Change 15 may be invalid.
          - XPath could not be validated.
        - Change 16 may be invalid.
          - XPath could not be validated.
        - Change 17 may be invalid.
          - XPath could not be validated.
        - Change 18 may be invalid.
          - XPath could not be validated.
        - Change 19 may be invalid.
          - XPath could not be validated.
        - Change 20 may be invalid.
          - XPath could not be validated.
        - Change 21 may be invalid.
          - XPath could not be validated.
        - Change 22 may be invalid.
          - XPath could not be validated.
        - Change 23 may be invalid.
          - XPath could not be validated.
        - Change 24 may be invalid.
          - XPath could not be validated.
        - Change 25 may be invalid.
          - XPath could not be validated.
        - Change 26 may be invalid.
          - XPath could not be validated.
        - Change 27 may be invalid.
          - XPath could not be validated.
        - Change 28 may be invalid.
          - XPath could not be validated.
        - Change 29 may be invalid.
          - XPath could not be validated.
        - Change 30 may be invalid.
          - XPath could not be validated.
        - Change 31 may be invalid.
          - XPath could not be validated.
        - Change 32 may be invalid.
          - XPath could not be validated.
        - Change 33 may be invalid.
          - XPath could not be validated.
        - Change 34 may be invalid.
          - XPath could not be validated.
        - Change 35 may be invalid.
          - XPath could not be validated.
        - Change 36 may be invalid.
          - XPath could not be validated.
        - Change 37 may be invalid.
          - XPath could not be validated.
        - Change 38 may be invalid.
          - XPath could not be validated.
        - Change 39 may be invalid.
          - XPath could not be validated.
        - Change 40 may be invalid.
          - XPath could not be validated.
        - Change 41 may be invalid.
          - XPath could not be validated.
        - Change 42 may be invalid.
          - XPath could not be validated.
        - Change 43 may be invalid.
          - XPath could not be validated.
        - Change 44 may be invalid.
          - XPath could not be validated.
        - Change 45 may be invalid.
          - XPath could not be validated.
        - Change 46 may be invalid.
          - XPath could not be validated.
        - Change 47 may be invalid.
          - XPath could not be validated.
        - Change 48 may be invalid.
          - XPath could not be validated.
        - Change 49 may be invalid.
          - XPath could not be validated.
        - Change 50 may be invalid.
          - XPath could not be validated.
        - Change 51 may be invalid.
          - XPath could not be validated.
        - Change 52 may be invalid.
          - XPath could not be validated.
        - Change 53 may be invalid.
          - XPath could not be validated.
        - Change 54 may be invalid.
          - XPath could not be validated.
        - Change 55 may be invalid.
          - XPath could not be validated.
        - Change 56 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cdc13T_variable_Cdc13T` may be invalid.
      - Variable `value_component_Cdc13T_variable_Cdc13T` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cdc13T_variable_k1` may be invalid.
      - Variable `value_component_Cdc13T_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_preMPF` may be invalid.
      - Variable `value_component_preMPF_variable_preMPF` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_kwee` may be invalid.
      - Variable `value_component_preMPF_variable_kwee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_kwee_` may be invalid.
      - Variable `value_component_preMPF_variable_kwee_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_kwee__` may be invalid.
      - Variable `value_component_preMPF_variable_kwee__` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Vawee` may be invalid.
      - Variable `value_component_preMPF_variable_Vawee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Viwee` may be invalid.
      - Variable `value_component_preMPF_variable_Viwee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Jawee` may be invalid.
      - Variable `value_component_preMPF_variable_Jawee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Jiwee` may be invalid.
      - Variable `value_component_preMPF_variable_Jiwee` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_k25` may be invalid.
      - Variable `value_component_preMPF_variable_k25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_k25_` may be invalid.
      - Variable `value_component_preMPF_variable_k25_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_k25__` may be invalid.
      - Variable `value_component_preMPF_variable_k25__` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Va25` may be invalid.
      - Variable `value_component_preMPF_variable_Va25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Vi25` may be invalid.
      - Variable `value_component_preMPF_variable_Vi25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Ja25` may be invalid.
      - Variable `value_component_preMPF_variable_Ja25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_preMPF_variable_Ji25` may be invalid.
      - Variable `value_component_preMPF_variable_Ji25` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_Ste9` may be invalid.
      - Variable `value_component_Ste9_variable_Ste9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_k3_` may be invalid.
      - Variable `value_component_Ste9_variable_k3_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_k3__` may be invalid.
      - Variable `value_component_Ste9_variable_k3__` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_k4` may be invalid.
      - Variable `value_component_Ste9_variable_k4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_k4_` may be invalid.
      - Variable `value_component_Ste9_variable_k4_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_J3` may be invalid.
      - Variable `value_component_Ste9_variable_J3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ste9_variable_J4` may be invalid.
      - Variable `value_component_Ste9_variable_J4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1T_variable_Slp1T` may be invalid.
      - Variable `value_component_Slp1T_variable_Slp1T` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1T_variable_k5_` may be invalid.
      - Variable `value_component_Slp1T_variable_k5_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1T_variable_k5__` may be invalid.
      - Variable `value_component_Slp1T_variable_k5__` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1T_variable_J5` may be invalid.
      - Variable `value_component_Slp1T_variable_J5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1_variable_Slp1` may be invalid.
      - Variable `value_component_Slp1_variable_Slp1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1_variable_k7` may be invalid.
      - Variable `value_component_Slp1_variable_k7` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1_variable_k8` may be invalid.
      - Variable `value_component_Slp1_variable_k8` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1_variable_J7` may be invalid.
      - Variable `value_component_Slp1_variable_J7` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Slp1_variable_J8` may be invalid.
      - Variable `value_component_Slp1_variable_J8` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IEP_variable_IEP` may be invalid.
      - Variable `value_component_IEP_variable_IEP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IEP_variable_k9` may be invalid.
      - Variable `value_component_IEP_variable_k9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IEP_variable_k10` may be invalid.
      - Variable `value_component_IEP_variable_k10` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IEP_variable_J9` may be invalid.
      - Variable `value_component_IEP_variable_J9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IEP_variable_J10` may be invalid.
      - Variable `value_component_IEP_variable_J10` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Rum1T_variable_Rum1T` may be invalid.
      - Variable `value_component_Rum1T_variable_Rum1T` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Rum1T_variable_k11` may be invalid.
      - Variable `value_component_Rum1T_variable_k11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Rum1T_variable_k12` may be invalid.
      - Variable `value_component_Rum1T_variable_k12` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Rum1T_variable_k12_` may be invalid.
      - Variable `value_component_Rum1T_variable_k12_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Rum1T_variable_k12__` may be invalid.
      - Variable `value_component_Rum1T_variable_k12__` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_SK_variable_SK` may be invalid.
      - Variable `value_component_SK_variable_SK` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_SK_variable_k13` may be invalid.
      - Variable `value_component_SK_variable_k13` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_SK_variable_k14` may be invalid.
      - Variable `value_component_SK_variable_k14` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_M_variable_M` may be invalid.
      - Variable `value_component_M_variable_M` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_M_variable_mu` may be invalid.
      - Variable `value_component_M_variable_mu` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Trimer_variable_Trimer` may be invalid.
      - Variable `value_component_Trimer_variable_Trimer` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Trimer_variable_sum` may be invalid.
      - Variable `value_component_Trimer_variable_sum` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Trimer_variable_Kdiss` may be invalid.
      - Variable `value_component_Trimer_variable_Kdiss` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_MPF_variable_MPF` may be invalid.
      - Variable `value_component_MPF_variable_MPF` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TF_variable_TF` may be invalid.
      - Variable `value_component_TF_variable_TF` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TF_variable_k15` may be invalid.
      - Variable `value_component_TF_variable_k15` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TF_variable_k16_` may be invalid.
      - Variable `value_component_TF_variable_k16_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TF_variable_k16__` may be invalid.
      - Variable `value_component_TF_variable_k16__` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TF_variable_J15` may be invalid.
      - Variable `value_component_TF_variable_J15` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TF_variable_J16` may be invalid.
      - Variable `value_component_TF_variable_J16` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_kinetic_parameters_variable_k2_` may be invalid.
      - Variable `value_component_kinetic_parameters_variable_k2_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_kinetic_parameters_variable_k2__` may be invalid.
      - Variable `value_component_kinetic_parameters_variable_k2__` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_kinetic_parameters_variable_k2___` may be invalid.
      - Variable `value_component_kinetic_parameters_variable_k2___` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_kinetic_parameters_variable_k6` may be invalid.
      - Variable `value_component_kinetic_parameters_variable_k6` may be invalid.
        - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:
  simulation_0.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 63 data sets

Executing SED-ML file 1: simulation_0.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


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upload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626176fcabe612c540c68a2e/rawLog.txt
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upload: outputs/log.yml to s3://files.biosimulations.org/simulations/626176fcabe612c540c68a2e/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
