[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    462      0 --:--:-- --:--:-- --:--:--   463

100  336k  100  336k    0     0   784k      0 --:--:-- --:--:-- --:--:--  784k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive may be invalid.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
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      - Change 82 may be invalid.
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  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Glc_x_0_variable_Glc_x_0` may be invalid.
    - Variable `value_component_Glc_x_0_variable_Glc_x_0` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Glc_x_variable_Glc_x` may be invalid.
    - Variable `value_component_Glc_x_variable_Glc_x` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Glc_variable_Glc` may be invalid.
    - Variable `value_component_Glc_variable_Glc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_G6P_variable_G6P` may be invalid.
    - Variable `value_component_G6P_variable_G6P` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_F6P_variable_F6P` may be invalid.
    - Variable `value_component_F6P_variable_F6P` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_FBP_variable_FBP` may be invalid.
    - Variable `value_component_FBP_variable_FBP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAP_variable_GAP` may be invalid.
    - Variable `value_component_GAP_variable_GAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_DHAP_variable_DHAP` may be invalid.
    - Variable `value_component_DHAP_variable_DHAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_BPG_variable_BPG` may be invalid.
    - Variable `value_component_BPG_variable_BPG` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PEP_variable_PEP` may be invalid.
    - Variable `value_component_PEP_variable_PEP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Pyr_variable_Pyr` may be invalid.
    - Variable `value_component_Pyr_variable_Pyr` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ATP_variable_ATP` may be invalid.
    - Variable `value_component_ATP_variable_ATP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ADP_variable_ADP` may be invalid.
    - Variable `value_component_ADP_variable_ADP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_AMP_variable_AMP` may be invalid.
    - Variable `value_component_AMP_variable_AMP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CN_x_0_variable_CN_x_0` may be invalid.
    - Variable `value_component_CN_x_0_variable_CN_x_0` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CN_x_variable_CN_x` may be invalid.
    - Variable `value_component_CN_x_variable_CN_x` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ACA_variable_ACA` may be invalid.
    - Variable `value_component_ACA_variable_ACA` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ACA_x_variable_ACA_x` may be invalid.
    - Variable `value_component_ACA_x_variable_ACA_x` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_EtOH_variable_EtOH` may be invalid.
    - Variable `value_component_EtOH_variable_EtOH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_EtOH_x_variable_EtOH_x` may be invalid.
    - Variable `value_component_EtOH_x_variable_EtOH_x` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Glyc_variable_Glyc` may be invalid.
    - Variable `value_component_Glyc_variable_Glyc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Glyc_x_variable_Glyc_x` may be invalid.
    - Variable `value_component_Glyc_x_variable_Glyc_x` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_NADH_variable_NADH` may be invalid.
    - Variable `value_component_NADH_variable_NADH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_NAD_variable_NAD` may be invalid.
    - Variable `value_component_NAD_variable_NAD` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_inGlc_variable_inGlc` may be invalid.
    - Variable `value_component_inGlc_variable_inGlc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GlcTrans_variable_GlcTrans` may be invalid.
    - Variable `value_component_GlcTrans_variable_GlcTrans` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GlcTrans_variable_K2_Glc` may be invalid.
    - Variable `value_component_GlcTrans_variable_K2_Glc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GlcTrans_variable_K2_IG6P` may be invalid.
    - Variable `value_component_GlcTrans_variable_K2_IG6P` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GlcTrans_variable_K2_IIG6P` may be invalid.
    - Variable `value_component_GlcTrans_variable_K2_IIG6P` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GlcTrans_variable_V_2m` may be invalid.
    - Variable `value_component_GlcTrans_variable_V_2m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GlcTrans_variable_P2` may be invalid.
    - Variable `value_component_GlcTrans_variable_P2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_HK_variable_HK` may be invalid.
    - Variable `value_component_HK_variable_HK` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_HK_variable_K3_DGlc` may be invalid.
    - Variable `value_component_HK_variable_K3_DGlc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_HK_variable_K3_Glc` may be invalid.
    - Variable `value_component_HK_variable_K3_Glc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_HK_variable_K3_ATP` may be invalid.
    - Variable `value_component_HK_variable_K3_ATP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_HK_variable_V_3m` may be invalid.
    - Variable `value_component_HK_variable_V_3m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PGI_variable_PGI` may be invalid.
    - Variable `value_component_PGI_variable_PGI` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PGI_variable_V_4m` may be invalid.
    - Variable `value_component_PGI_variable_V_4m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PGI_variable_K4_G6P` may be invalid.
    - Variable `value_component_PGI_variable_K4_G6P` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PGI_variable_K4_F6P` may be invalid.
    - Variable `value_component_PGI_variable_K4_F6P` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PGI_variable_K4_eq` may be invalid.
    - Variable `value_component_PGI_variable_K4_eq` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PFK_variable_PFK` may be invalid.
    - Variable `value_component_PFK_variable_PFK` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PFK_variable_K5` may be invalid.
    - Variable `value_component_PFK_variable_K5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PFK_variable_kappa5` may be invalid.
    - Variable `value_component_PFK_variable_kappa5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PFK_variable_V_5m` may be invalid.
    - Variable `value_component_PFK_variable_V_5m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_ALD` may be invalid.
    - Variable `value_component_ALD_variable_ALD` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_K6_eq` may be invalid.
    - Variable `value_component_ALD_variable_K6_eq` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_K6_FBP` may be invalid.
    - Variable `value_component_ALD_variable_K6_FBP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_K6_DHAP` may be invalid.
    - Variable `value_component_ALD_variable_K6_DHAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_K6_GAP` may be invalid.
    - Variable `value_component_ALD_variable_K6_GAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_K6_IGAP` may be invalid.
    - Variable `value_component_ALD_variable_K6_IGAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_V_6r` may be invalid.
    - Variable `value_component_ALD_variable_V_6r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ALD_variable_V_6f` may be invalid.
    - Variable `value_component_ALD_variable_V_6f` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TIM_variable_TIM` may be invalid.
    - Variable `value_component_TIM_variable_TIM` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TIM_variable_K7_eq` may be invalid.
    - Variable `value_component_TIM_variable_K7_eq` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TIM_variable_K7_DHAP` may be invalid.
    - Variable `value_component_TIM_variable_K7_DHAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TIM_variable_K7_GAP` may be invalid.
    - Variable `value_component_TIM_variable_K7_GAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_TIM_variable_V_7m` may be invalid.
    - Variable `value_component_TIM_variable_V_7m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAPDH_variable_GAPDH` may be invalid.
    - Variable `value_component_GAPDH_variable_GAPDH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAPDH_variable_K8_NAD` may be invalid.
    - Variable `value_component_GAPDH_variable_K8_NAD` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAPDH_variable_K8_NADH` may be invalid.
    - Variable `value_component_GAPDH_variable_K8_NADH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAPDH_variable_K8_GAP` may be invalid.
    - Variable `value_component_GAPDH_variable_K8_GAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAPDH_variable_K8_BPG` may be invalid.
    - Variable `value_component_GAPDH_variable_K8_BPG` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAPDH_variable_K8_eq` may be invalid.
    - Variable `value_component_GAPDH_variable_K8_eq` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_GAPDH_variable_V_8m` may be invalid.
    - Variable `value_component_GAPDH_variable_V_8m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpPEP_variable_lpPEP` may be invalid.
    - Variable `value_component_lpPEP_variable_lpPEP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpPEP_variable_k9f` may be invalid.
    - Variable `value_component_lpPEP_variable_k9f` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpPEP_variable_k9r` may be invalid.
    - Variable `value_component_lpPEP_variable_k9r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PK_variable_PK` may be invalid.
    - Variable `value_component_PK_variable_PK` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PK_variable_K10_PEP` may be invalid.
    - Variable `value_component_PK_variable_K10_PEP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PK_variable_K10_ADP` may be invalid.
    - Variable `value_component_PK_variable_K10_ADP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PK_variable_V_10m` may be invalid.
    - Variable `value_component_PK_variable_V_10m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PDC_variable_PDC` may be invalid.
    - Variable `value_component_PDC_variable_PDC` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PDC_variable_K11` may be invalid.
    - Variable `value_component_PDC_variable_K11` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PDC_variable_V_11m` may be invalid.
    - Variable `value_component_PDC_variable_V_11m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ADH_variable_ADH` may be invalid.
    - Variable `value_component_ADH_variable_ADH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ADH_variable_K12_NADH` may be invalid.
    - Variable `value_component_ADH_variable_K12_NADH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ADH_variable_K12_ACA` may be invalid.
    - Variable `value_component_ADH_variable_K12_ACA` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ADH_variable_V_12m` may be invalid.
    - Variable `value_component_ADH_variable_V_12m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_outEtOH_variable_outEtOH` may be invalid.
    - Variable `value_component_outEtOH_variable_outEtOH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_difEtOH_variable_difEtOH` may be invalid.
    - Variable `value_component_difEtOH_variable_difEtOH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_difEtOH_variable_k13` may be invalid.
    - Variable `value_component_difEtOH_variable_k13` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpGlyc_variable_lpGlyc` may be invalid.
    - Variable `value_component_lpGlyc_variable_lpGlyc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpGlyc_variable_K15_NADH` may be invalid.
    - Variable `value_component_lpGlyc_variable_K15_NADH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpGlyc_variable_K15_INADH` may be invalid.
    - Variable `value_component_lpGlyc_variable_K15_INADH` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpGlyc_variable_K15_INAD` may be invalid.
    - Variable `value_component_lpGlyc_variable_K15_INAD` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpGlyc_variable_K15_DHAP` may be invalid.
    - Variable `value_component_lpGlyc_variable_K15_DHAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lpGlyc_variable_V_15m` may be invalid.
    - Variable `value_component_lpGlyc_variable_V_15m` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_outGlyc_variable_outGlyc` may be invalid.
    - Variable `value_component_outGlyc_variable_outGlyc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_difGlyc_variable_difGlyc` may be invalid.
    - Variable `value_component_difGlyc_variable_difGlyc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_difGlyc_variable_k16` may be invalid.
    - Variable `value_component_difGlyc_variable_k16` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_outACA_variable_outACA` may be invalid.
    - Variable `value_component_outACA_variable_outACA` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_difACA_variable_difACA` may be invalid.
    - Variable `value_component_difACA_variable_difACA` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_difACA_variable_k18` may be invalid.
    - Variable `value_component_difACA_variable_k18` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lacto_variable_lacto` may be invalid.
    - Variable `value_component_lacto_variable_lacto` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_lacto_variable_k20` may be invalid.
    - Variable `value_component_lacto_variable_k20` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_inCN_variable_inCN` may be invalid.
    - Variable `value_component_inCN_variable_inCN` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_storage_variable_storage` may be invalid.
    - Variable `value_component_storage_variable_storage` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_storage_variable_k22` may be invalid.
    - Variable `value_component_storage_variable_k22` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_consum_variable_consum` may be invalid.
    - Variable `value_component_consum_variable_consum` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_consum_variable_k23` may be invalid.
    - Variable `value_component_consum_variable_k23` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_AK_variable_AK` may be invalid.
    - Variable `value_component_AK_variable_AK` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_AK_variable_k24f` may be invalid.
    - Variable `value_component_AK_variable_k24f` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_AK_variable_k24r` may be invalid.
    - Variable `value_component_AK_variable_k24r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_parameters_variable_y_vol` may be invalid.
    - Variable `value_component_model_parameters_variable_y_vol` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_parameters_variable_k0` may be invalid.
    - Variable `value_component_model_parameters_variable_k0` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive may be invalid.
  - The SED-ML file at location `simulation_0.sedml` may be invalid.
    - Model `model` may be invalid.
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          - XPath could not be validated.
        - Change 82 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Glc_x_0_variable_Glc_x_0` may be invalid.
      - Variable `value_component_Glc_x_0_variable_Glc_x_0` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Glc_x_variable_Glc_x` may be invalid.
      - Variable `value_component_Glc_x_variable_Glc_x` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Glc_variable_Glc` may be invalid.
      - Variable `value_component_Glc_variable_Glc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_G6P_variable_G6P` may be invalid.
      - Variable `value_component_G6P_variable_G6P` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_F6P_variable_F6P` may be invalid.
      - Variable `value_component_F6P_variable_F6P` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_FBP_variable_FBP` may be invalid.
      - Variable `value_component_FBP_variable_FBP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAP_variable_GAP` may be invalid.
      - Variable `value_component_GAP_variable_GAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_DHAP_variable_DHAP` may be invalid.
      - Variable `value_component_DHAP_variable_DHAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_BPG_variable_BPG` may be invalid.
      - Variable `value_component_BPG_variable_BPG` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PEP_variable_PEP` may be invalid.
      - Variable `value_component_PEP_variable_PEP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pyr_variable_Pyr` may be invalid.
      - Variable `value_component_Pyr_variable_Pyr` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ATP_variable_ATP` may be invalid.
      - Variable `value_component_ATP_variable_ATP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ADP_variable_ADP` may be invalid.
      - Variable `value_component_ADP_variable_ADP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_AMP_variable_AMP` may be invalid.
      - Variable `value_component_AMP_variable_AMP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CN_x_0_variable_CN_x_0` may be invalid.
      - Variable `value_component_CN_x_0_variable_CN_x_0` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CN_x_variable_CN_x` may be invalid.
      - Variable `value_component_CN_x_variable_CN_x` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ACA_variable_ACA` may be invalid.
      - Variable `value_component_ACA_variable_ACA` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ACA_x_variable_ACA_x` may be invalid.
      - Variable `value_component_ACA_x_variable_ACA_x` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_EtOH_variable_EtOH` may be invalid.
      - Variable `value_component_EtOH_variable_EtOH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_EtOH_x_variable_EtOH_x` may be invalid.
      - Variable `value_component_EtOH_x_variable_EtOH_x` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Glyc_variable_Glyc` may be invalid.
      - Variable `value_component_Glyc_variable_Glyc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Glyc_x_variable_Glyc_x` may be invalid.
      - Variable `value_component_Glyc_x_variable_Glyc_x` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_NADH_variable_NADH` may be invalid.
      - Variable `value_component_NADH_variable_NADH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_NAD_variable_NAD` may be invalid.
      - Variable `value_component_NAD_variable_NAD` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_inGlc_variable_inGlc` may be invalid.
      - Variable `value_component_inGlc_variable_inGlc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GlcTrans_variable_GlcTrans` may be invalid.
      - Variable `value_component_GlcTrans_variable_GlcTrans` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GlcTrans_variable_K2_Glc` may be invalid.
      - Variable `value_component_GlcTrans_variable_K2_Glc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GlcTrans_variable_K2_IG6P` may be invalid.
      - Variable `value_component_GlcTrans_variable_K2_IG6P` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GlcTrans_variable_K2_IIG6P` may be invalid.
      - Variable `value_component_GlcTrans_variable_K2_IIG6P` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GlcTrans_variable_V_2m` may be invalid.
      - Variable `value_component_GlcTrans_variable_V_2m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GlcTrans_variable_P2` may be invalid.
      - Variable `value_component_GlcTrans_variable_P2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_HK_variable_HK` may be invalid.
      - Variable `value_component_HK_variable_HK` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_HK_variable_K3_DGlc` may be invalid.
      - Variable `value_component_HK_variable_K3_DGlc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_HK_variable_K3_Glc` may be invalid.
      - Variable `value_component_HK_variable_K3_Glc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_HK_variable_K3_ATP` may be invalid.
      - Variable `value_component_HK_variable_K3_ATP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_HK_variable_V_3m` may be invalid.
      - Variable `value_component_HK_variable_V_3m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PGI_variable_PGI` may be invalid.
      - Variable `value_component_PGI_variable_PGI` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PGI_variable_V_4m` may be invalid.
      - Variable `value_component_PGI_variable_V_4m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PGI_variable_K4_G6P` may be invalid.
      - Variable `value_component_PGI_variable_K4_G6P` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PGI_variable_K4_F6P` may be invalid.
      - Variable `value_component_PGI_variable_K4_F6P` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PGI_variable_K4_eq` may be invalid.
      - Variable `value_component_PGI_variable_K4_eq` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PFK_variable_PFK` may be invalid.
      - Variable `value_component_PFK_variable_PFK` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PFK_variable_K5` may be invalid.
      - Variable `value_component_PFK_variable_K5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PFK_variable_kappa5` may be invalid.
      - Variable `value_component_PFK_variable_kappa5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PFK_variable_V_5m` may be invalid.
      - Variable `value_component_PFK_variable_V_5m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_ALD` may be invalid.
      - Variable `value_component_ALD_variable_ALD` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_K6_eq` may be invalid.
      - Variable `value_component_ALD_variable_K6_eq` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_K6_FBP` may be invalid.
      - Variable `value_component_ALD_variable_K6_FBP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_K6_DHAP` may be invalid.
      - Variable `value_component_ALD_variable_K6_DHAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_K6_GAP` may be invalid.
      - Variable `value_component_ALD_variable_K6_GAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_K6_IGAP` may be invalid.
      - Variable `value_component_ALD_variable_K6_IGAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_V_6r` may be invalid.
      - Variable `value_component_ALD_variable_V_6r` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ALD_variable_V_6f` may be invalid.
      - Variable `value_component_ALD_variable_V_6f` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TIM_variable_TIM` may be invalid.
      - Variable `value_component_TIM_variable_TIM` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TIM_variable_K7_eq` may be invalid.
      - Variable `value_component_TIM_variable_K7_eq` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TIM_variable_K7_DHAP` may be invalid.
      - Variable `value_component_TIM_variable_K7_DHAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TIM_variable_K7_GAP` may be invalid.
      - Variable `value_component_TIM_variable_K7_GAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_TIM_variable_V_7m` may be invalid.
      - Variable `value_component_TIM_variable_V_7m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAPDH_variable_GAPDH` may be invalid.
      - Variable `value_component_GAPDH_variable_GAPDH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAPDH_variable_K8_NAD` may be invalid.
      - Variable `value_component_GAPDH_variable_K8_NAD` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAPDH_variable_K8_NADH` may be invalid.
      - Variable `value_component_GAPDH_variable_K8_NADH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAPDH_variable_K8_GAP` may be invalid.
      - Variable `value_component_GAPDH_variable_K8_GAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAPDH_variable_K8_BPG` may be invalid.
      - Variable `value_component_GAPDH_variable_K8_BPG` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAPDH_variable_K8_eq` may be invalid.
      - Variable `value_component_GAPDH_variable_K8_eq` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_GAPDH_variable_V_8m` may be invalid.
      - Variable `value_component_GAPDH_variable_V_8m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpPEP_variable_lpPEP` may be invalid.
      - Variable `value_component_lpPEP_variable_lpPEP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpPEP_variable_k9f` may be invalid.
      - Variable `value_component_lpPEP_variable_k9f` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpPEP_variable_k9r` may be invalid.
      - Variable `value_component_lpPEP_variable_k9r` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PK_variable_PK` may be invalid.
      - Variable `value_component_PK_variable_PK` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PK_variable_K10_PEP` may be invalid.
      - Variable `value_component_PK_variable_K10_PEP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PK_variable_K10_ADP` may be invalid.
      - Variable `value_component_PK_variable_K10_ADP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PK_variable_V_10m` may be invalid.
      - Variable `value_component_PK_variable_V_10m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PDC_variable_PDC` may be invalid.
      - Variable `value_component_PDC_variable_PDC` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PDC_variable_K11` may be invalid.
      - Variable `value_component_PDC_variable_K11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PDC_variable_V_11m` may be invalid.
      - Variable `value_component_PDC_variable_V_11m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ADH_variable_ADH` may be invalid.
      - Variable `value_component_ADH_variable_ADH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ADH_variable_K12_NADH` may be invalid.
      - Variable `value_component_ADH_variable_K12_NADH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ADH_variable_K12_ACA` may be invalid.
      - Variable `value_component_ADH_variable_K12_ACA` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ADH_variable_V_12m` may be invalid.
      - Variable `value_component_ADH_variable_V_12m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_outEtOH_variable_outEtOH` may be invalid.
      - Variable `value_component_outEtOH_variable_outEtOH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_difEtOH_variable_difEtOH` may be invalid.
      - Variable `value_component_difEtOH_variable_difEtOH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_difEtOH_variable_k13` may be invalid.
      - Variable `value_component_difEtOH_variable_k13` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpGlyc_variable_lpGlyc` may be invalid.
      - Variable `value_component_lpGlyc_variable_lpGlyc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpGlyc_variable_K15_NADH` may be invalid.
      - Variable `value_component_lpGlyc_variable_K15_NADH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpGlyc_variable_K15_INADH` may be invalid.
      - Variable `value_component_lpGlyc_variable_K15_INADH` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpGlyc_variable_K15_INAD` may be invalid.
      - Variable `value_component_lpGlyc_variable_K15_INAD` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpGlyc_variable_K15_DHAP` may be invalid.
      - Variable `value_component_lpGlyc_variable_K15_DHAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lpGlyc_variable_V_15m` may be invalid.
      - Variable `value_component_lpGlyc_variable_V_15m` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_outGlyc_variable_outGlyc` may be invalid.
      - Variable `value_component_outGlyc_variable_outGlyc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_difGlyc_variable_difGlyc` may be invalid.
      - Variable `value_component_difGlyc_variable_difGlyc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_difGlyc_variable_k16` may be invalid.
      - Variable `value_component_difGlyc_variable_k16` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_outACA_variable_outACA` may be invalid.
      - Variable `value_component_outACA_variable_outACA` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_difACA_variable_difACA` may be invalid.
      - Variable `value_component_difACA_variable_difACA` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_difACA_variable_k18` may be invalid.
      - Variable `value_component_difACA_variable_k18` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lacto_variable_lacto` may be invalid.
      - Variable `value_component_lacto_variable_lacto` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_lacto_variable_k20` may be invalid.
      - Variable `value_component_lacto_variable_k20` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_inCN_variable_inCN` may be invalid.
      - Variable `value_component_inCN_variable_inCN` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_storage_variable_storage` may be invalid.
      - Variable `value_component_storage_variable_storage` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_storage_variable_k22` may be invalid.
      - Variable `value_component_storage_variable_k22` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_consum_variable_consum` may be invalid.
      - Variable `value_component_consum_variable_consum` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_consum_variable_k23` may be invalid.
      - Variable `value_component_consum_variable_k23` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_AK_variable_AK` may be invalid.
      - Variable `value_component_AK_variable_AK` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_AK_variable_k24f` may be invalid.
      - Variable `value_component_AK_variable_k24f` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_AK_variable_k24r` may be invalid.
      - Variable `value_component_AK_variable_k24r` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_parameters_variable_y_vol` may be invalid.
      - Variable `value_component_model_parameters_variable_y_vol` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_parameters_variable_k0` may be invalid.
      - Variable `value_component_model_parameters_variable_k0` may be invalid.
        - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:
  simulation_0.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 107 data sets

Executing SED-ML file 1: simulation_0.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


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upload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261756c90c6a19595578bb8/rawLog.txt
Completed 80.7 KiB/80.7 KiB (700.3 KiB/s) with 1 file(s) remaining
upload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261756c90c6a19595578bb8/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
