[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    461      0 --:--:-- --:--:-- --:--:--   461

100  126k  100  126k    0     0   297k      0 --:--:-- --:--:-- --:--:--  297k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive may be invalid.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
      - Change 6 may be invalid.
        - XPath could not be validated.
      - Change 7 may be invalid.
        - XPath could not be validated.
      - Change 8 may be invalid.
        - XPath could not be validated.
      - Change 9 may be invalid.
        - XPath could not be validated.
      - Change 10 may be invalid.
        - XPath could not be validated.
      - Change 11 may be invalid.
        - XPath could not be validated.
      - Change 12 may be invalid.
        - XPath could not be validated.
      - Change 13 may be invalid.
        - XPath could not be validated.
      - Change 14 may be invalid.
        - XPath could not be validated.
      - Change 15 may be invalid.
        - XPath could not be validated.
      - Change 16 may be invalid.
        - XPath could not be validated.
      - Change 17 may be invalid.
        - XPath could not be validated.
      - Change 18 may be invalid.
        - XPath could not be validated.
      - Change 19 may be invalid.
        - XPath could not be validated.
      - Change 20 may be invalid.
        - XPath could not be validated.
      - Change 21 may be invalid.
        - XPath could not be validated.
      - Change 22 may be invalid.
        - XPath could not be validated.
      - Change 23 may be invalid.
        - XPath could not be validated.
      - Change 24 may be invalid.
        - XPath could not be validated.
      - Change 25 may be invalid.
        - XPath could not be validated.
      - Change 26 may be invalid.
        - XPath could not be validated.
      - Change 27 may be invalid.
        - XPath could not be validated.
      - Change 28 may be invalid.
        - XPath could not be validated.
      - Change 29 may be invalid.
        - XPath could not be validated.
      - Change 30 may be invalid.
        - XPath could not be validated.
      - Change 31 may be invalid.
        - XPath could not be validated.
      - Change 32 may be invalid.
        - XPath could not be validated.
      - Change 33 may be invalid.
        - XPath could not be validated.
      - Change 34 may be invalid.
        - XPath could not be validated.
      - Change 35 may be invalid.
        - XPath could not be validated.
      - Change 36 may be invalid.
        - XPath could not be validated.
      - Change 37 may be invalid.
        - XPath could not be validated.
      - Change 38 may be invalid.
        - XPath could not be validated.
      - Change 39 may be invalid.
        - XPath could not be validated.
      - Change 40 may be invalid.
        - XPath could not be validated.
      - Change 41 may be invalid.
        - XPath could not be validated.
      - Change 42 may be invalid.
        - XPath could not be validated.
      - Change 43 may be invalid.
        - XPath could not be validated.
      - Change 44 may be invalid.
        - XPath could not be validated.
      - Change 45 may be invalid.
        - XPath could not be validated.
      - Change 46 may be invalid.
        - XPath could not be validated.
      - Change 47 may be invalid.
        - XPath could not be validated.
      - Change 48 may be invalid.
        - XPath could not be validated.
      - Change 49 may be invalid.
        - XPath could not be validated.
      - Change 50 may be invalid.
        - XPath could not be validated.
      - Change 51 may be invalid.
        - XPath could not be validated.
      - Change 52 may be invalid.
        - XPath could not be validated.
      - Change 53 may be invalid.
        - XPath could not be validated.
      - Change 54 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V1_variable_V_max1` may be invalid.
    - Variable `value_component_V1_variable_V_max1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V1_variable_GEFt` may be invalid.
    - Variable `value_component_V1_variable_GEFt` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V1_variable_V_1` may be invalid.
    - Variable `value_component_V1_variable_V_1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V2_variable_Str` may be invalid.
    - Variable `value_component_V2_variable_Str` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V2_variable_V_max2` may be invalid.
    - Variable `value_component_V2_variable_V_max2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V2_variable_V_2` may be invalid.
    - Variable `value_component_V2_variable_V_2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V3_variable_k_c3` may be invalid.
    - Variable `value_component_V3_variable_k_c3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V3_variable_PKAt` may be invalid.
    - Variable `value_component_V3_variable_PKAt` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V3_variable_GAPt` may be invalid.
    - Variable `value_component_V3_variable_GAPt` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V3_variable_V_3` may be invalid.
    - Variable `value_component_V3_variable_V_3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V4_variable_V_max4` may be invalid.
    - Variable `value_component_V4_variable_V_max4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V4_variable_V_4` may be invalid.
    - Variable `value_component_V4_variable_V_4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V5_variable_k_gef` may be invalid.
    - Variable `value_component_V5_variable_k_gef` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V5_variable_RASt` may be invalid.
    - Variable `value_component_V5_variable_RASt` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V5_variable_V_5` may be invalid.
    - Variable `value_component_V5_variable_V_5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V6_variable_k_gap` may be invalid.
    - Variable `value_component_V6_variable_k_gap` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V6_variable_V_6` may be invalid.
    - Variable `value_component_V6_variable_V_6` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V7_variable_k_c7` may be invalid.
    - Variable `value_component_V7_variable_k_c7` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V7_variable_PDEt` may be invalid.
    - Variable `value_component_V7_variable_PDEt` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V7_variable_V_7` may be invalid.
    - Variable `value_component_V7_variable_V_7` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V8_variable_V_max8` may be invalid.
    - Variable `value_component_V8_variable_V_max8` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V8_variable_V_8` may be invalid.
    - Variable `value_component_V8_variable_V_8` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_VPKAact_variable_a` may be invalid.
    - Variable `value_component_VPKAact_variable_a` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_VPKAact_variable_r` may be invalid.
    - Variable `value_component_VPKAact_variable_r` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_VPKAact_variable_V_PKAact` may be invalid.
    - Variable `value_component_VPKAact_variable_V_PKAact` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_holoenzyme_R_cAMP_variable_R2cAMP2` may be invalid.
    - Variable `value_component_holoenzyme_R_cAMP_variable_R2cAMP2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_C_subunit_variable_C` may be invalid.
    - Variable `value_component_C_subunit_variable_C` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_GEF_variable_K_1` may be invalid.
    - Variable `value_component_active_GEF_variable_K_1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_GEF_variable_K_2` may be invalid.
    - Variable `value_component_active_GEF_variable_K_2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_GEF_variable_GEFa` may be invalid.
    - Variable `value_component_active_GEF_variable_GEFa` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_GAP_variable_K_3` may be invalid.
    - Variable `value_component_active_GAP_variable_K_3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_GAP_variable_K_4` may be invalid.
    - Variable `value_component_active_GAP_variable_K_4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_GAP_variable_GAPa` may be invalid.
    - Variable `value_component_active_GAP_variable_GAPa` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_RAS_to_GTP_variable_K_5` may be invalid.
    - Variable `value_component_RAS_to_GTP_variable_K_5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_RAS_to_GTP_variable_K_6` may be invalid.
    - Variable `value_component_RAS_to_GTP_variable_K_6` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_RAS_to_GTP_variable_RGTP` may be invalid.
    - Variable `value_component_RAS_to_GTP_variable_RGTP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_adenylate_cyclase_variable_k_a` may be invalid.
    - Variable `value_component_adenylate_cyclase_variable_k_a` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_adenylate_cyclase_variable_k_i` may be invalid.
    - Variable `value_component_adenylate_cyclase_variable_k_i` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_adenylate_cyclase_variable_CYCLa` may be invalid.
    - Variable `value_component_adenylate_cyclase_variable_CYCLa` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_PDE_variable_K_7` may be invalid.
    - Variable `value_component_active_PDE_variable_K_7` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_PDE_variable_K_8` may be invalid.
    - Variable `value_component_active_PDE_variable_K_8` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_active_PDE_variable_PDEa` may be invalid.
    - Variable `value_component_active_PDE_variable_PDEa` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cyclic_AMP_variable_k_s` may be invalid.
    - Variable `value_component_cyclic_AMP_variable_k_s` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cyclic_AMP_variable_k_d` may be invalid.
    - Variable `value_component_cyclic_AMP_variable_k_d` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cyclic_AMP_variable_CYCLt` may be invalid.
    - Variable `value_component_cyclic_AMP_variable_CYCLt` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cyclic_AMP_variable_K_md` may be invalid.
    - Variable `value_component_cyclic_AMP_variable_K_md` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cyclic_AMP_variable_cAMP` may be invalid.
    - Variable `value_component_cyclic_AMP_variable_cAMP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_holoenzyme_R_C_variable_R2C2` may be invalid.
    - Variable `value_component_holoenzyme_R_C_variable_R2C2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V9_variable_k_c9` may be invalid.
    - Variable `value_component_V9_variable_k_c9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V9_variable_MSNt` may be invalid.
    - Variable `value_component_V9_variable_MSNt` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V9_variable_V_9` may be invalid.
    - Variable `value_component_V9_variable_V_9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V10_variable_V_max10` may be invalid.
    - Variable `value_component_V10_variable_V_max10` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V10_variable_V_10` may be invalid.
    - Variable `value_component_V10_variable_V_10` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V11_variable_k_c11` may be invalid.
    - Variable `value_component_V11_variable_k_c11` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V11_variable_V_11` may be invalid.
    - Variable `value_component_V11_variable_V_11` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V12_variable_V_max12` may be invalid.
    - Variable `value_component_V12_variable_V_max12` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_V12_variable_V_12` may be invalid.
    - Variable `value_component_V12_variable_V_12` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cytosol_variable_k_t1` may be invalid.
    - Variable `value_component_cytosol_variable_k_t1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cytosol_variable_k_t2` may be invalid.
    - Variable `value_component_cytosol_variable_k_t2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cytosol_variable_K_11` may be invalid.
    - Variable `value_component_cytosol_variable_K_11` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cytosol_variable_K_12` may be invalid.
    - Variable `value_component_cytosol_variable_K_12` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cytosol_variable_MC` may be invalid.
    - Variable `value_component_cytosol_variable_MC` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_nucleus_variable_K_9` may be invalid.
    - Variable `value_component_nucleus_variable_K_9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_nucleus_variable_K_10` may be invalid.
    - Variable `value_component_nucleus_variable_K_10` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_nucleus_variable_MN` may be invalid.
    - Variable `value_component_nucleus_variable_MN` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_nucleus_phos_variable_k_t3` may be invalid.
    - Variable `value_component_nucleus_phos_variable_k_t3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_nucleus_phos_variable_k_t4` may be invalid.
    - Variable `value_component_nucleus_phos_variable_k_t4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_nucleus_phos_variable_MNP` may be invalid.
    - Variable `value_component_nucleus_phos_variable_MNP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_cytosol_phos_variable_MCP` may be invalid.
    - Variable `value_component_cytosol_phos_variable_MCP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mcyto_variable_M_cyto` may be invalid.
    - Variable `value_component_Mcyto_variable_M_cyto` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mnucl_variable_M_nucl` may be invalid.
    - Variable `value_component_Mnucl_variable_M_nucl` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive may be invalid.
  - The SED-ML file at location `simulation_0.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
        - Change 9 may be invalid.
          - XPath could not be validated.
        - Change 10 may be invalid.
          - XPath could not be validated.
        - Change 11 may be invalid.
          - XPath could not be validated.
        - Change 12 may be invalid.
          - XPath could not be validated.
        - Change 13 may be invalid.
          - XPath could not be validated.
        - Change 14 may be invalid.
          - XPath could not be validated.
        - Change 15 may be invalid.
          - XPath could not be validated.
        - Change 16 may be invalid.
          - XPath could not be validated.
        - Change 17 may be invalid.
          - XPath could not be validated.
        - Change 18 may be invalid.
          - XPath could not be validated.
        - Change 19 may be invalid.
          - XPath could not be validated.
        - Change 20 may be invalid.
          - XPath could not be validated.
        - Change 21 may be invalid.
          - XPath could not be validated.
        - Change 22 may be invalid.
          - XPath could not be validated.
        - Change 23 may be invalid.
          - XPath could not be validated.
        - Change 24 may be invalid.
          - XPath could not be validated.
        - Change 25 may be invalid.
          - XPath could not be validated.
        - Change 26 may be invalid.
          - XPath could not be validated.
        - Change 27 may be invalid.
          - XPath could not be validated.
        - Change 28 may be invalid.
          - XPath could not be validated.
        - Change 29 may be invalid.
          - XPath could not be validated.
        - Change 30 may be invalid.
          - XPath could not be validated.
        - Change 31 may be invalid.
          - XPath could not be validated.
        - Change 32 may be invalid.
          - XPath could not be validated.
        - Change 33 may be invalid.
          - XPath could not be validated.
        - Change 34 may be invalid.
          - XPath could not be validated.
        - Change 35 may be invalid.
          - XPath could not be validated.
        - Change 36 may be invalid.
          - XPath could not be validated.
        - Change 37 may be invalid.
          - XPath could not be validated.
        - Change 38 may be invalid.
          - XPath could not be validated.
        - Change 39 may be invalid.
          - XPath could not be validated.
        - Change 40 may be invalid.
          - XPath could not be validated.
        - Change 41 may be invalid.
          - XPath could not be validated.
        - Change 42 may be invalid.
          - XPath could not be validated.
        - Change 43 may be invalid.
          - XPath could not be validated.
        - Change 44 may be invalid.
          - XPath could not be validated.
        - Change 45 may be invalid.
          - XPath could not be validated.
        - Change 46 may be invalid.
          - XPath could not be validated.
        - Change 47 may be invalid.
          - XPath could not be validated.
        - Change 48 may be invalid.
          - XPath could not be validated.
        - Change 49 may be invalid.
          - XPath could not be validated.
        - Change 50 may be invalid.
          - XPath could not be validated.
        - Change 51 may be invalid.
          - XPath could not be validated.
        - Change 52 may be invalid.
          - XPath could not be validated.
        - Change 53 may be invalid.
          - XPath could not be validated.
        - Change 54 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V1_variable_V_max1` may be invalid.
      - Variable `value_component_V1_variable_V_max1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V1_variable_GEFt` may be invalid.
      - Variable `value_component_V1_variable_GEFt` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V1_variable_V_1` may be invalid.
      - Variable `value_component_V1_variable_V_1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V2_variable_Str` may be invalid.
      - Variable `value_component_V2_variable_Str` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V2_variable_V_max2` may be invalid.
      - Variable `value_component_V2_variable_V_max2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V2_variable_V_2` may be invalid.
      - Variable `value_component_V2_variable_V_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V3_variable_k_c3` may be invalid.
      - Variable `value_component_V3_variable_k_c3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V3_variable_PKAt` may be invalid.
      - Variable `value_component_V3_variable_PKAt` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V3_variable_GAPt` may be invalid.
      - Variable `value_component_V3_variable_GAPt` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V3_variable_V_3` may be invalid.
      - Variable `value_component_V3_variable_V_3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V4_variable_V_max4` may be invalid.
      - Variable `value_component_V4_variable_V_max4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V4_variable_V_4` may be invalid.
      - Variable `value_component_V4_variable_V_4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V5_variable_k_gef` may be invalid.
      - Variable `value_component_V5_variable_k_gef` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V5_variable_RASt` may be invalid.
      - Variable `value_component_V5_variable_RASt` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V5_variable_V_5` may be invalid.
      - Variable `value_component_V5_variable_V_5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V6_variable_k_gap` may be invalid.
      - Variable `value_component_V6_variable_k_gap` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V6_variable_V_6` may be invalid.
      - Variable `value_component_V6_variable_V_6` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V7_variable_k_c7` may be invalid.
      - Variable `value_component_V7_variable_k_c7` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V7_variable_PDEt` may be invalid.
      - Variable `value_component_V7_variable_PDEt` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V7_variable_V_7` may be invalid.
      - Variable `value_component_V7_variable_V_7` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V8_variable_V_max8` may be invalid.
      - Variable `value_component_V8_variable_V_max8` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V8_variable_V_8` may be invalid.
      - Variable `value_component_V8_variable_V_8` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_VPKAact_variable_a` may be invalid.
      - Variable `value_component_VPKAact_variable_a` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_VPKAact_variable_r` may be invalid.
      - Variable `value_component_VPKAact_variable_r` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_VPKAact_variable_V_PKAact` may be invalid.
      - Variable `value_component_VPKAact_variable_V_PKAact` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_holoenzyme_R_cAMP_variable_R2cAMP2` may be invalid.
      - Variable `value_component_holoenzyme_R_cAMP_variable_R2cAMP2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_C_subunit_variable_C` may be invalid.
      - Variable `value_component_C_subunit_variable_C` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_GEF_variable_K_1` may be invalid.
      - Variable `value_component_active_GEF_variable_K_1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_GEF_variable_K_2` may be invalid.
      - Variable `value_component_active_GEF_variable_K_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_GEF_variable_GEFa` may be invalid.
      - Variable `value_component_active_GEF_variable_GEFa` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_GAP_variable_K_3` may be invalid.
      - Variable `value_component_active_GAP_variable_K_3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_GAP_variable_K_4` may be invalid.
      - Variable `value_component_active_GAP_variable_K_4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_GAP_variable_GAPa` may be invalid.
      - Variable `value_component_active_GAP_variable_GAPa` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_RAS_to_GTP_variable_K_5` may be invalid.
      - Variable `value_component_RAS_to_GTP_variable_K_5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_RAS_to_GTP_variable_K_6` may be invalid.
      - Variable `value_component_RAS_to_GTP_variable_K_6` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_RAS_to_GTP_variable_RGTP` may be invalid.
      - Variable `value_component_RAS_to_GTP_variable_RGTP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_adenylate_cyclase_variable_k_a` may be invalid.
      - Variable `value_component_adenylate_cyclase_variable_k_a` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_adenylate_cyclase_variable_k_i` may be invalid.
      - Variable `value_component_adenylate_cyclase_variable_k_i` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_adenylate_cyclase_variable_CYCLa` may be invalid.
      - Variable `value_component_adenylate_cyclase_variable_CYCLa` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_PDE_variable_K_7` may be invalid.
      - Variable `value_component_active_PDE_variable_K_7` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_PDE_variable_K_8` may be invalid.
      - Variable `value_component_active_PDE_variable_K_8` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_active_PDE_variable_PDEa` may be invalid.
      - Variable `value_component_active_PDE_variable_PDEa` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cyclic_AMP_variable_k_s` may be invalid.
      - Variable `value_component_cyclic_AMP_variable_k_s` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cyclic_AMP_variable_k_d` may be invalid.
      - Variable `value_component_cyclic_AMP_variable_k_d` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cyclic_AMP_variable_CYCLt` may be invalid.
      - Variable `value_component_cyclic_AMP_variable_CYCLt` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cyclic_AMP_variable_K_md` may be invalid.
      - Variable `value_component_cyclic_AMP_variable_K_md` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cyclic_AMP_variable_cAMP` may be invalid.
      - Variable `value_component_cyclic_AMP_variable_cAMP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_holoenzyme_R_C_variable_R2C2` may be invalid.
      - Variable `value_component_holoenzyme_R_C_variable_R2C2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V9_variable_k_c9` may be invalid.
      - Variable `value_component_V9_variable_k_c9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V9_variable_MSNt` may be invalid.
      - Variable `value_component_V9_variable_MSNt` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V9_variable_V_9` may be invalid.
      - Variable `value_component_V9_variable_V_9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V10_variable_V_max10` may be invalid.
      - Variable `value_component_V10_variable_V_max10` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V10_variable_V_10` may be invalid.
      - Variable `value_component_V10_variable_V_10` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V11_variable_k_c11` may be invalid.
      - Variable `value_component_V11_variable_k_c11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V11_variable_V_11` may be invalid.
      - Variable `value_component_V11_variable_V_11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V12_variable_V_max12` may be invalid.
      - Variable `value_component_V12_variable_V_max12` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_V12_variable_V_12` may be invalid.
      - Variable `value_component_V12_variable_V_12` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cytosol_variable_k_t1` may be invalid.
      - Variable `value_component_cytosol_variable_k_t1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cytosol_variable_k_t2` may be invalid.
      - Variable `value_component_cytosol_variable_k_t2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cytosol_variable_K_11` may be invalid.
      - Variable `value_component_cytosol_variable_K_11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cytosol_variable_K_12` may be invalid.
      - Variable `value_component_cytosol_variable_K_12` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cytosol_variable_MC` may be invalid.
      - Variable `value_component_cytosol_variable_MC` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_nucleus_variable_K_9` may be invalid.
      - Variable `value_component_nucleus_variable_K_9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_nucleus_variable_K_10` may be invalid.
      - Variable `value_component_nucleus_variable_K_10` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_nucleus_variable_MN` may be invalid.
      - Variable `value_component_nucleus_variable_MN` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_nucleus_phos_variable_k_t3` may be invalid.
      - Variable `value_component_nucleus_phos_variable_k_t3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_nucleus_phos_variable_k_t4` may be invalid.
      - Variable `value_component_nucleus_phos_variable_k_t4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_nucleus_phos_variable_MNP` may be invalid.
      - Variable `value_component_nucleus_phos_variable_MNP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_cytosol_phos_variable_MCP` may be invalid.
      - Variable `value_component_cytosol_phos_variable_MCP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mcyto_variable_M_cyto` may be invalid.
      - Variable `value_component_Mcyto_variable_M_cyto` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mnucl_variable_M_nucl` may be invalid.
      - Variable `value_component_Mnucl_variable_M_nucl` may be invalid.
        - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:
  simulation_0.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 72 data sets

Executing SED-ML file 1: simulation_0.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m===================================================== Saving log ====================================================[0m
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upload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261751990c6a19595578a3a/rawLog.txt
Completed 55.7 KiB/55.7 KiB (548.3 KiB/s) with 1 file(s) remaining
upload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261751990c6a19595578a3a/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
