[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    486      0 --:--:-- --:--:-- --:--:--   487

100 1072k  100 1072k    0     0  2340k      0 --:--:-- --:--:-- --:--:-- 2340k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive may be invalid.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 8 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 12 may be invalid.
        - XPath could not be validated.
      - Change 13 may be invalid.
        - XPath could not be validated.
      - Change 14 may be invalid.
        - XPath could not be validated.
      - Change 15 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 19 may be invalid.
        - XPath could not be validated.
      - Change 20 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 22 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 25 may be invalid.
        - XPath could not be validated.
      - Change 26 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 37 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 40 may be invalid.
        - XPath could not be validated.
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        - XPath could not be validated.
      - Change 42 may be invalid.
        - XPath could not be validated.
      - Change 43 may be invalid.
        - XPath could not be validated.
      - Change 44 may be invalid.
        - XPath could not be validated.
      - Change 45 may be invalid.
        - XPath could not be validated.
      - Change 46 may be invalid.
        - XPath could not be validated.
      - Change 47 may be invalid.
        - XPath could not be validated.
      - Change 48 may be invalid.
        - XPath could not be validated.
      - Change 49 may be invalid.
        - XPath could not be validated.
      - Change 50 may be invalid.
        - XPath could not be validated.
      - Change 51 may be invalid.
        - XPath could not be validated.
      - Change 52 may be invalid.
        - XPath could not be validated.
      - Change 53 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_Environment_variable_time` may be invalid.
    - Variable `value_component_Environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_NADHm` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_NADHm` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_gamma` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_gamma` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_NADm` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_NADm` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_ADPm` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_ADPm` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_PSIm` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_PSIm` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_Cam` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_Cam` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_NADtot` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_NADtot` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_fm` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_fm` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_Cmito` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_Cmito` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_Amtot` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_Amtot` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_ATPm` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_ATPm` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mitochondrial_variables_variable_RATm` may be invalid.
    - Variable `value_component_Mitochondrial_variables_variable_RATm` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytosol_variable_ATPc` may be invalid.
    - Variable `value_component_Cytosol_variable_ATPc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytosol_variable_ADPc` may be invalid.
    - Variable `value_component_Cytosol_variable_ADPc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytosol_variable_Ac_tot` may be invalid.
    - Variable `value_component_Cytosol_variable_Ac_tot` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytosol_variable_khyd` may be invalid.
    - Variable `value_component_Cytosol_variable_khyd` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytosol_variable_Jhydbas` may be invalid.
    - Variable `value_component_Cytosol_variable_Jhydbas` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytosol_variable_Jh_yd` may be invalid.
    - Variable `value_component_Cytosol_variable_Jh_yd` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytosol_variable_delta` may be invalid.
    - Variable `value_component_Cytosol_variable_delta` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_protocol_variable_c` may be invalid.
    - Variable `value_component_Clamp_protocol_variable_c` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_protocol_variable_FBP` may be invalid.
    - Variable `value_component_Clamp_protocol_variable_FBP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Fhold` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Fhold` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Ftest` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Ftest` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Fton` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Fton` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Ftoff` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Ftoff` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Fproto` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Fproto` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Cproto` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Cproto` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Chold` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Chold` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctest` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Ctest` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Cton1` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Cton1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Cton2` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Cton2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Cton3` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Cton3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctoff1` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Ctoff1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctoff2` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Ctoff2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctoff3` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_Ctoff3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_pulse1` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_pulse1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_pulse2` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_pulse2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_pulse3` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_pulse3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_on` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_on` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_off` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_off` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Cton1` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_Cton1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Cton2` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_Cton2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Cton3` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_Cton3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Ctoff1` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_Ctoff1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Ctoff2` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_Ctoff2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Ctoff3` may be invalid.
    - Variable `value_component_Clamp_parameters_variable_heav_Ctoff3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Juni` may be invalid.
    - Variable `value_component_J_variables_variable_Juni` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jpdh` may be invalid.
    - Variable `value_component_J_variables_variable_Jpdh` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jnaca` may be invalid.
    - Variable `value_component_J_variables_variable_Jnaca` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jmito` may be invalid.
    - Variable `value_component_J_variables_variable_Jmito` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jh_leak` may be invalid.
    - Variable `value_component_J_variables_variable_Jh_leak` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jh_atp` may be invalid.
    - Variable `value_component_J_variables_variable_Jh_atp` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jo` may be invalid.
    - Variable `value_component_J_variables_variable_Jo` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jh_res` may be invalid.
    - Variable `value_component_J_variables_variable_Jh_res` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jf1f0` may be invalid.
    - Variable `value_component_J_variables_variable_Jf1f0` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jant` may be invalid.
    - Variable `value_component_J_variables_variable_Jant` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_Jgpdh` may be invalid.
    - Variable `value_component_J_variables_variable_Jgpdh` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_MM1` may be invalid.
    - Variable `value_component_J_variables_variable_MM1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_MM2` may be invalid.
    - Variable `value_component_J_variables_variable_MM2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_b13` may be invalid.
    - Variable `value_component_J_variables_variable_b13` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_b2` may be invalid.
    - Variable `value_component_J_variables_variable_b2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_FRT` may be invalid.
    - Variable `value_component_J_variables_variable_FRT` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_J_variables_variable_kgpdh` may be invalid.
    - Variable `value_component_J_variables_variable_kgpdh` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p1` may be invalid.
    - Variable `value_component_Parameters_variable_p1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p2` may be invalid.
    - Variable `value_component_Parameters_variable_p2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p3` may be invalid.
    - Variable `value_component_Parameters_variable_p3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p4` may be invalid.
    - Variable `value_component_Parameters_variable_p4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p5` may be invalid.
    - Variable `value_component_Parameters_variable_p5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p6` may be invalid.
    - Variable `value_component_Parameters_variable_p6` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p7` may be invalid.
    - Variable `value_component_Parameters_variable_p7` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p8` may be invalid.
    - Variable `value_component_Parameters_variable_p8` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p9` may be invalid.
    - Variable `value_component_Parameters_variable_p9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p10` may be invalid.
    - Variable `value_component_Parameters_variable_p10` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p11` may be invalid.
    - Variable `value_component_Parameters_variable_p11` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p12` may be invalid.
    - Variable `value_component_Parameters_variable_p12` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p13` may be invalid.
    - Variable `value_component_Parameters_variable_p13` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p14` may be invalid.
    - Variable `value_component_Parameters_variable_p14` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p15` may be invalid.
    - Variable `value_component_Parameters_variable_p15` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p16` may be invalid.
    - Variable `value_component_Parameters_variable_p16` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p17` may be invalid.
    - Variable `value_component_Parameters_variable_p17` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p18` may be invalid.
    - Variable `value_component_Parameters_variable_p18` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p19` may be invalid.
    - Variable `value_component_Parameters_variable_p19` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p20` may be invalid.
    - Variable `value_component_Parameters_variable_p20` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p21` may be invalid.
    - Variable `value_component_Parameters_variable_p21` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p22` may be invalid.
    - Variable `value_component_Parameters_variable_p22` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p23` may be invalid.
    - Variable `value_component_Parameters_variable_p23` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parameters_variable_p24` may be invalid.
    - Variable `value_component_Parameters_variable_p24` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive may be invalid.
  - The SED-ML file at location `simulation_0.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
        - Change 9 may be invalid.
          - XPath could not be validated.
        - Change 10 may be invalid.
          - XPath could not be validated.
        - Change 11 may be invalid.
          - XPath could not be validated.
        - Change 12 may be invalid.
          - XPath could not be validated.
        - Change 13 may be invalid.
          - XPath could not be validated.
        - Change 14 may be invalid.
          - XPath could not be validated.
        - Change 15 may be invalid.
          - XPath could not be validated.
        - Change 16 may be invalid.
          - XPath could not be validated.
        - Change 17 may be invalid.
          - XPath could not be validated.
        - Change 18 may be invalid.
          - XPath could not be validated.
        - Change 19 may be invalid.
          - XPath could not be validated.
        - Change 20 may be invalid.
          - XPath could not be validated.
        - Change 21 may be invalid.
          - XPath could not be validated.
        - Change 22 may be invalid.
          - XPath could not be validated.
        - Change 23 may be invalid.
          - XPath could not be validated.
        - Change 24 may be invalid.
          - XPath could not be validated.
        - Change 25 may be invalid.
          - XPath could not be validated.
        - Change 26 may be invalid.
          - XPath could not be validated.
        - Change 27 may be invalid.
          - XPath could not be validated.
        - Change 28 may be invalid.
          - XPath could not be validated.
        - Change 29 may be invalid.
          - XPath could not be validated.
        - Change 30 may be invalid.
          - XPath could not be validated.
        - Change 31 may be invalid.
          - XPath could not be validated.
        - Change 32 may be invalid.
          - XPath could not be validated.
        - Change 33 may be invalid.
          - XPath could not be validated.
        - Change 34 may be invalid.
          - XPath could not be validated.
        - Change 35 may be invalid.
          - XPath could not be validated.
        - Change 36 may be invalid.
          - XPath could not be validated.
        - Change 37 may be invalid.
          - XPath could not be validated.
        - Change 38 may be invalid.
          - XPath could not be validated.
        - Change 39 may be invalid.
          - XPath could not be validated.
        - Change 40 may be invalid.
          - XPath could not be validated.
        - Change 41 may be invalid.
          - XPath could not be validated.
        - Change 42 may be invalid.
          - XPath could not be validated.
        - Change 43 may be invalid.
          - XPath could not be validated.
        - Change 44 may be invalid.
          - XPath could not be validated.
        - Change 45 may be invalid.
          - XPath could not be validated.
        - Change 46 may be invalid.
          - XPath could not be validated.
        - Change 47 may be invalid.
          - XPath could not be validated.
        - Change 48 may be invalid.
          - XPath could not be validated.
        - Change 49 may be invalid.
          - XPath could not be validated.
        - Change 50 may be invalid.
          - XPath could not be validated.
        - Change 51 may be invalid.
          - XPath could not be validated.
        - Change 52 may be invalid.
          - XPath could not be validated.
        - Change 53 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_Environment_variable_time` may be invalid.
      - Variable `value_component_Environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_NADHm` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_NADHm` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_gamma` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_gamma` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_NADm` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_NADm` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_ADPm` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_ADPm` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_PSIm` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_PSIm` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_Cam` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_Cam` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_NADtot` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_NADtot` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_fm` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_fm` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_Cmito` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_Cmito` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_Amtot` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_Amtot` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_ATPm` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_ATPm` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mitochondrial_variables_variable_RATm` may be invalid.
      - Variable `value_component_Mitochondrial_variables_variable_RATm` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytosol_variable_ATPc` may be invalid.
      - Variable `value_component_Cytosol_variable_ATPc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytosol_variable_ADPc` may be invalid.
      - Variable `value_component_Cytosol_variable_ADPc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytosol_variable_Ac_tot` may be invalid.
      - Variable `value_component_Cytosol_variable_Ac_tot` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytosol_variable_khyd` may be invalid.
      - Variable `value_component_Cytosol_variable_khyd` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytosol_variable_Jhydbas` may be invalid.
      - Variable `value_component_Cytosol_variable_Jhydbas` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytosol_variable_Jh_yd` may be invalid.
      - Variable `value_component_Cytosol_variable_Jh_yd` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytosol_variable_delta` may be invalid.
      - Variable `value_component_Cytosol_variable_delta` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_protocol_variable_c` may be invalid.
      - Variable `value_component_Clamp_protocol_variable_c` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_protocol_variable_FBP` may be invalid.
      - Variable `value_component_Clamp_protocol_variable_FBP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Fhold` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Fhold` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Ftest` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Ftest` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Fton` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Fton` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Ftoff` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Ftoff` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Fproto` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Fproto` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Cproto` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Cproto` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Chold` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Chold` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctest` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Ctest` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Cton1` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Cton1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Cton2` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Cton2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Cton3` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Cton3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctoff1` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Ctoff1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctoff2` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Ctoff2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_Ctoff3` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_Ctoff3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_pulse1` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_pulse1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_pulse2` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_pulse2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_pulse3` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_pulse3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_on` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_on` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_off` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_off` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Cton1` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_Cton1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Cton2` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_Cton2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Cton3` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_Cton3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Ctoff1` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_Ctoff1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Ctoff2` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_Ctoff2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Clamp_parameters_variable_heav_Ctoff3` may be invalid.
      - Variable `value_component_Clamp_parameters_variable_heav_Ctoff3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Juni` may be invalid.
      - Variable `value_component_J_variables_variable_Juni` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jpdh` may be invalid.
      - Variable `value_component_J_variables_variable_Jpdh` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jnaca` may be invalid.
      - Variable `value_component_J_variables_variable_Jnaca` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jmito` may be invalid.
      - Variable `value_component_J_variables_variable_Jmito` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jh_leak` may be invalid.
      - Variable `value_component_J_variables_variable_Jh_leak` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jh_atp` may be invalid.
      - Variable `value_component_J_variables_variable_Jh_atp` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jo` may be invalid.
      - Variable `value_component_J_variables_variable_Jo` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jh_res` may be invalid.
      - Variable `value_component_J_variables_variable_Jh_res` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jf1f0` may be invalid.
      - Variable `value_component_J_variables_variable_Jf1f0` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jant` may be invalid.
      - Variable `value_component_J_variables_variable_Jant` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_Jgpdh` may be invalid.
      - Variable `value_component_J_variables_variable_Jgpdh` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_MM1` may be invalid.
      - Variable `value_component_J_variables_variable_MM1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_MM2` may be invalid.
      - Variable `value_component_J_variables_variable_MM2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_b13` may be invalid.
      - Variable `value_component_J_variables_variable_b13` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_b2` may be invalid.
      - Variable `value_component_J_variables_variable_b2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_FRT` may be invalid.
      - Variable `value_component_J_variables_variable_FRT` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_J_variables_variable_kgpdh` may be invalid.
      - Variable `value_component_J_variables_variable_kgpdh` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p1` may be invalid.
      - Variable `value_component_Parameters_variable_p1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p2` may be invalid.
      - Variable `value_component_Parameters_variable_p2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p3` may be invalid.
      - Variable `value_component_Parameters_variable_p3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p4` may be invalid.
      - Variable `value_component_Parameters_variable_p4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p5` may be invalid.
      - Variable `value_component_Parameters_variable_p5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p6` may be invalid.
      - Variable `value_component_Parameters_variable_p6` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p7` may be invalid.
      - Variable `value_component_Parameters_variable_p7` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p8` may be invalid.
      - Variable `value_component_Parameters_variable_p8` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p9` may be invalid.
      - Variable `value_component_Parameters_variable_p9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p10` may be invalid.
      - Variable `value_component_Parameters_variable_p10` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p11` may be invalid.
      - Variable `value_component_Parameters_variable_p11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p12` may be invalid.
      - Variable `value_component_Parameters_variable_p12` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p13` may be invalid.
      - Variable `value_component_Parameters_variable_p13` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p14` may be invalid.
      - Variable `value_component_Parameters_variable_p14` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p15` may be invalid.
      - Variable `value_component_Parameters_variable_p15` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p16` may be invalid.
      - Variable `value_component_Parameters_variable_p16` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p17` may be invalid.
      - Variable `value_component_Parameters_variable_p17` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p18` may be invalid.
      - Variable `value_component_Parameters_variable_p18` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p19` may be invalid.
      - Variable `value_component_Parameters_variable_p19` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p20` may be invalid.
      - Variable `value_component_Parameters_variable_p20` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p21` may be invalid.
      - Variable `value_component_Parameters_variable_p21` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p22` may be invalid.
      - Variable `value_component_Parameters_variable_p22` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p23` may be invalid.
      - Variable `value_component_Parameters_variable_p23` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parameters_variable_p24` may be invalid.
      - Variable `value_component_Parameters_variable_p24` may be invalid.
        - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:
  simulation_0.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 88 data sets

Executing SED-ML file 1: simulation_0.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m===================================================== Saving log ====================================================[0m
Completed 48.5 KiB/48.5 KiB (320.0 KiB/s) with 1 file(s) remaining
upload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626173d990c6a1959557847c/rawLog.txt
Completed 69.3 KiB/69.3 KiB (438.7 KiB/s) with 1 file(s) remaining
upload: outputs/log.yml to s3://files.biosimulations.org/simulations/626173d990c6a1959557847c/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
