[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    451      0 --:--:-- --:--:-- --:--:--   452

100  114k  100  114k    0     0   265k      0 --:--:-- --:--:-- --:--:--  265k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive may be invalid.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
      - Change 6 may be invalid.
        - XPath could not be validated.
      - Change 7 may be invalid.
        - XPath could not be validated.
      - Change 8 may be invalid.
        - XPath could not be validated.
      - Change 9 may be invalid.
        - XPath could not be validated.
      - Change 10 may be invalid.
        - XPath could not be validated.
      - Change 11 may be invalid.
        - XPath could not be validated.
      - Change 12 may be invalid.
        - XPath could not be validated.
      - Change 13 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
    - Variable `value_component_Ca_variable_Ca` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_E_variable_E` may be invalid.
    - Variable `value_component_E_variable_E` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaE_variable_CaE` may be invalid.
    - Variable `value_component_CaE_variable_CaE` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca2E__variable_Ca2E_` may be invalid.
    - Variable `value_component_Ca2E__variable_Ca2E_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaE__variable_CaE_` may be invalid.
    - Variable `value_component_CaE__variable_CaE_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k3` may be invalid.
    - Variable `value_component_reaction_constants_variable_k3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k3_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k3_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k4` may be invalid.
    - Variable `value_component_reaction_constants_variable_k4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k4_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k4_` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
      - Change 6 may be invalid.
        - XPath could not be validated.
      - Change 7 may be invalid.
        - XPath could not be validated.
      - Change 8 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
    - Variable `value_component_Ca_variable_Ca` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Trop_variable_Trop` may be invalid.
    - Variable `value_component_Trop_variable_Trop` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaTrop_variable_CaTrop` may be invalid.
    - Variable `value_component_CaTrop_variable_CaTrop` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca2Trop_variable_Ca2Trop` may be invalid.
    - Variable `value_component_Ca2Trop_variable_Ca2Trop` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
    - Variable `value_component_Ca_variable_Ca` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Trop_variable_Trop` may be invalid.
    - Variable `value_component_Trop_variable_Trop` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaTrop_variable_CaTrop` may be invalid.
    - Variable `value_component_CaTrop_variable_CaTrop` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
      - Change 6 may be invalid.
        - XPath could not be validated.
      - Change 7 may be invalid.
        - XPath could not be validated.
      - Change 8 may be invalid.
        - XPath could not be validated.
      - Change 9 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
    - Variable `value_component_Ca_variable_Ca` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Parv_variable_Parv` may be invalid.
    - Variable `value_component_Parv_variable_Parv` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaParv_variable_CaParv` may be invalid.
    - Variable `value_component_CaParv_variable_CaParv` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Mg_variable_Mg` may be invalid.
    - Variable `value_component_Mg_variable_Mg` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_MgParv_variable_MgParv` may be invalid.
    - Variable `value_component_MgParv_variable_MgParv` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
      - Change 6 may be invalid.
        - XPath could not be validated.
      - Change 7 may be invalid.
        - XPath could not be validated.
      - Change 8 may be invalid.
        - XPath could not be validated.
      - Change 9 may be invalid.
        - XPath could not be validated.
      - Change 10 may be invalid.
        - XPath could not be validated.
      - Change 11 may be invalid.
        - XPath could not be validated.
      - Change 12 may be invalid.
        - XPath could not be validated.
      - Change 13 may be invalid.
        - XPath could not be validated.
      - Change 14 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
    - Variable `value_component_Ca_variable_Ca` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Fluo_variable_Fluo` may be invalid.
    - Variable `value_component_Fluo_variable_Fluo` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Pr_variable_Pr` may be invalid.
    - Variable `value_component_Pr_variable_Pr` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_PrFluo_variable_PrFluo` may be invalid.
    - Variable `value_component_PrFluo_variable_PrFluo` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaFluo_variable_CaFluo` may be invalid.
    - Variable `value_component_CaFluo_variable_CaFluo` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaPrFluo_variable_CaPrFluo` may be invalid.
    - Variable `value_component_CaPrFluo_variable_CaPrFluo` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k3` may be invalid.
    - Variable `value_component_reaction_constants_variable_k3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k3_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k3_` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k4` may be invalid.
    - Variable `value_component_reaction_constants_variable_k4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k4_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k4_` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
    - The changes of the model may be invalid.
      - Change 1 may be invalid.
        - XPath could not be validated.
      - Change 2 may be invalid.
        - XPath could not be validated.
      - Change 3 may be invalid.
        - XPath could not be validated.
      - Change 4 may be invalid.
        - XPath could not be validated.
      - Change 5 may be invalid.
        - XPath could not be validated.
  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
    - Variable `value_component_Ca_variable_Ca` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ATP_variable_ATP` may be invalid.
    - Variable `value_component_ATP_variable_ATP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CaATP_variable_CaATP` may be invalid.
    - Variable `value_component_CaATP_variable_CaATP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
    - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
      - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive may be invalid.
  - The SED-ML file at location `simulation_0.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
        - Change 9 may be invalid.
          - XPath could not be validated.
        - Change 10 may be invalid.
          - XPath could not be validated.
        - Change 11 may be invalid.
          - XPath could not be validated.
        - Change 12 may be invalid.
          - XPath could not be validated.
        - Change 13 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
      - Variable `value_component_Ca_variable_Ca` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_E_variable_E` may be invalid.
      - Variable `value_component_E_variable_E` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaE_variable_CaE` may be invalid.
      - Variable `value_component_CaE_variable_CaE` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca2E__variable_Ca2E_` may be invalid.
      - Variable `value_component_Ca2E__variable_Ca2E_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaE__variable_CaE_` may be invalid.
      - Variable `value_component_CaE__variable_CaE_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k3` may be invalid.
      - Variable `value_component_reaction_constants_variable_k3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k3_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k3_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k4` may be invalid.
      - Variable `value_component_reaction_constants_variable_k4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k4_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k4_` may be invalid.
        - XPath could not be validated.
  - The SED-ML file at location `simulation_1.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
      - Variable `value_component_Ca_variable_Ca` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Trop_variable_Trop` may be invalid.
      - Variable `value_component_Trop_variable_Trop` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaTrop_variable_CaTrop` may be invalid.
      - Variable `value_component_CaTrop_variable_CaTrop` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca2Trop_variable_Ca2Trop` may be invalid.
      - Variable `value_component_Ca2Trop_variable_Ca2Trop` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
        - XPath could not be validated.
  - The SED-ML file at location `simulation_2.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
      - Variable `value_component_Ca_variable_Ca` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Trop_variable_Trop` may be invalid.
      - Variable `value_component_Trop_variable_Trop` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaTrop_variable_CaTrop` may be invalid.
      - Variable `value_component_CaTrop_variable_CaTrop` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
        - XPath could not be validated.
  - The SED-ML file at location `simulation_3.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
        - Change 9 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
      - Variable `value_component_Ca_variable_Ca` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Parv_variable_Parv` may be invalid.
      - Variable `value_component_Parv_variable_Parv` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaParv_variable_CaParv` may be invalid.
      - Variable `value_component_CaParv_variable_CaParv` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Mg_variable_Mg` may be invalid.
      - Variable `value_component_Mg_variable_Mg` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_MgParv_variable_MgParv` may be invalid.
      - Variable `value_component_MgParv_variable_MgParv` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
        - XPath could not be validated.
  - The SED-ML file at location `simulation_4.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
        - Change 6 may be invalid.
          - XPath could not be validated.
        - Change 7 may be invalid.
          - XPath could not be validated.
        - Change 8 may be invalid.
          - XPath could not be validated.
        - Change 9 may be invalid.
          - XPath could not be validated.
        - Change 10 may be invalid.
          - XPath could not be validated.
        - Change 11 may be invalid.
          - XPath could not be validated.
        - Change 12 may be invalid.
          - XPath could not be validated.
        - Change 13 may be invalid.
          - XPath could not be validated.
        - Change 14 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
      - Variable `value_component_Ca_variable_Ca` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Fluo_variable_Fluo` may be invalid.
      - Variable `value_component_Fluo_variable_Fluo` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pr_variable_Pr` may be invalid.
      - Variable `value_component_Pr_variable_Pr` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_PrFluo_variable_PrFluo` may be invalid.
      - Variable `value_component_PrFluo_variable_PrFluo` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaFluo_variable_CaFluo` may be invalid.
      - Variable `value_component_CaFluo_variable_CaFluo` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaPrFluo_variable_CaPrFluo` may be invalid.
      - Variable `value_component_CaPrFluo_variable_CaPrFluo` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k2_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k2_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k3` may be invalid.
      - Variable `value_component_reaction_constants_variable_k3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k3_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k3_` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k4` may be invalid.
      - Variable `value_component_reaction_constants_variable_k4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k4_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k4_` may be invalid.
        - XPath could not be validated.
  - The SED-ML file at location `simulation_5.sedml` may be invalid.
    - Model `model` may be invalid.
      - The changes of the model may be invalid.
        - Change 1 may be invalid.
          - XPath could not be validated.
        - Change 2 may be invalid.
          - XPath could not be validated.
        - Change 3 may be invalid.
          - XPath could not be validated.
        - Change 4 may be invalid.
          - XPath could not be validated.
        - Change 5 may be invalid.
          - XPath could not be validated.
    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Ca_variable_Ca` may be invalid.
      - Variable `value_component_Ca_variable_Ca` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ATP_variable_ATP` may be invalid.
      - Variable `value_component_ATP_variable_ATP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CaATP_variable_CaATP` may be invalid.
      - Variable `value_component_CaATP_variable_CaATP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_reaction_constants_variable_k1_` may be invalid.
      - Variable `value_component_reaction_constants_variable_k1_` may be invalid.
        - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
Archive contains 6 SED-ML documents with 6 models, 6 simulations, 6 tasks, 6 reports, and 0 plots:
  simulation_0.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 14 data sets
  simulation_1.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 9 data sets
  simulation_2.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 6 data sets
  simulation_3.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 10 data sets
  simulation_4.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 15 data sets
  simulation_5.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 6 data sets

Executing SED-ML file 1: simulation_0.sedml ...
Executing SED-ML file 2: simulation_1.sedml ...
Executing SED-ML file 3: simulation_2.sedml ...
Executing SED-ML file 4: simulation_3.sedml ...
Executing SED-ML file 5: simulation_4.sedml ...
Executing SED-ML file 6: simulation_5.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 6 SED documents:
  SED documents (6):
    Succeeded: 6
    Skipped: 0
    Failed: 0
  Tasks (6):
    Succeeded: 6
    Skipped: 0
    Failed: 0
  Outputs (6):
    Succeeded: 6
    Skipped: 0
    Failed: 0


[0;36m===================================================== Saving log ====================================================[0m
Completed 38.9 KiB/38.9 KiB (258.1 KiB/s) with 1 file(s) remaining
upload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626173934679625b3246df91/rawLog.txt
Completed 59.2 KiB/59.2 KiB (569.7 KiB/s) with 1 file(s) remaining
upload: outputs/log.yml to s3://files.biosimulations.org/simulations/626173934679625b3246df91/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
