[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m=================================================== Set up storage ==================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    465      0 --:--:-- --:--:-- --:--:--   466

100  432k  100  432k    0     0   988k      0 --:--:-- --:--:-- --:--:--  988k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive may be invalid.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` may be invalid.
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  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
    - Variable `value_component_environment_variable_time` may be invalid.
      - XPath could not be validated.
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    - Variable `value_component_Casp8_variable_Casp8Bid` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Casp8_variable_J_0` may be invalid.
    - Variable `value_component_Casp8_variable_J_0` may be invalid.
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  - Data generator `data_generator_value_component_Casp8_variable_J_f0` may be invalid.
    - Variable `value_component_Casp8_variable_J_f0` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Casp8_variable_J_Casp8` may be invalid.
    - Variable `value_component_Casp8_variable_J_Casp8` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Apaf_1_variable_Apaf_1` may be invalid.
    - Variable `value_component_Apaf_1_variable_Apaf_1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Apaf_1_variable_J_Apaf_1` may be invalid.
    - Variable `value_component_Apaf_1_variable_J_Apaf_1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Apaf_1_variable_J_1` may be invalid.
    - Variable `value_component_Apaf_1_variable_J_1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CytcApaf_1_variable_CytcApaf_1` may be invalid.
    - Variable `value_component_CytcApaf_1_variable_CytcApaf_1` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_CytcApaf_1_variable_J_1b` may be invalid.
    - Variable `value_component_CytcApaf_1_variable_J_1b` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytc_variable_Cytc` may be invalid.
    - Variable `value_component_Cytc_variable_Cytc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytc_variable_J_Cytc` may be invalid.
    - Variable `value_component_Cytc_variable_J_Cytc` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytc_mito_variable_Cytc_mito` may be invalid.
    - Variable `value_component_Cytc_mito_variable_Cytc_mito` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytc_mito_variable_J_14` may be invalid.
    - Variable `value_component_Cytc_mito_variable_J_14` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Cytc_mito_variable_J_Cytc_mito` may be invalid.
    - Variable `value_component_Cytc_mito_variable_J_Cytc_mito` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Bax_2_variable_Bax_2` may be invalid.
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    - Variable `value_component_Bax_2_variable_J_Bax_2` may be invalid.
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    - Variable `value_component_tBid_mito_variable_tBid_mito` may be invalid.
      - XPath could not be validated.
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    - Variable `value_component_tBid_mito_variable_J_12a` may be invalid.
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  - Data generator `data_generator_value_component_tBid_mito_variable_J_tBid_mito` may be invalid.
    - Variable `value_component_tBid_mito_variable_J_tBid_mito` may be invalid.
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  - Data generator `data_generator_value_component_tBidBax_variable_tBidBax` may be invalid.
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  - Data generator `data_generator_value_component_tBidBax_variable_J_12b` may be invalid.
    - Variable `value_component_tBidBax_variable_J_12b` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_tBidBax_variable_J_tBidBax` may be invalid.
    - Variable `value_component_tBidBax_variable_J_tBidBax` may be invalid.
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    - Variable `value_component_Bax_variable_J_13` may be invalid.
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    - Variable `value_component_Bcl_2_variable_Bcl_2` may be invalid.
      - XPath could not be validated.
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  - Data generator `data_generator_value_component_Casp3Bid_variable_Casp3Bid` may be invalid.
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  - Data generator `data_generator_value_component_Casp3Bid_variable_J_8` may be invalid.
    - Variable `value_component_Casp3Bid_variable_J_8` may be invalid.
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  - Data generator `data_generator_value_component_Casp3Bid_variable_J_f8` may be invalid.
    - Variable `value_component_Casp3Bid_variable_J_f8` may be invalid.
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    - Variable `value_component_Bid_variable_Bid` may be invalid.
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  - Data generator `data_generator_value_component_Bid_variable_J_Bid` may be invalid.
    - Variable `value_component_Bid_variable_J_Bid` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Casp3_variable_Casp3` may be invalid.
    - Variable `value_component_Casp3_variable_Casp3` may be invalid.
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  - Data generator `data_generator_value_component_Casp3_variable_Casp3IAP` may be invalid.
    - Variable `value_component_Casp3_variable_Casp3IAP` may be invalid.
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  - Data generator `data_generator_value_component_Casp3_variable_J_7` may be invalid.
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  - Data generator `data_generator_value_component_Casp3_variable_J_Casp3` may be invalid.
    - Variable `value_component_Casp3_variable_J_Casp3` may be invalid.
      - XPath could not be validated.
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    - Variable `value_component_Apop_variable_Apop` may be invalid.
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    - Variable `value_component_Pro9_variable_Pro9` may be invalid.
      - XPath could not be validated.
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    - Variable `value_component_Pro9_variable_ApopPro9` may be invalid.
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  - Data generator `data_generator_value_component_Pro9_variable_J_2` may be invalid.
    - Variable `value_component_Pro9_variable_J_2` may be invalid.
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  - Data generator `data_generator_value_component_Pro9_variable_J_3` may be invalid.
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    - Variable `value_component_Pro9_variable_J_Pro9` may be invalid.
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  - Data generator `data_generator_value_component_ApopPro9_2_variable_ApopPro9_2` may be invalid.
    - Variable `value_component_ApopPro9_2_variable_ApopPro9_2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopPro9_2_variable_J_f3` may be invalid.
    - Variable `value_component_ApopPro9_2_variable_J_f3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopCasp9_2Pro3_variable_ApopCasp9_2Pro3` may be invalid.
    - Variable `value_component_ApopCasp9_2Pro3_variable_ApopCasp9_2Pro3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopCasp9_2Pro3_variable_J_6b` may be invalid.
    - Variable `value_component_ApopCasp9_2Pro3_variable_J_6b` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopCasp9_2Pro3_variable_J_f6b` may be invalid.
    - Variable `value_component_ApopCasp9_2Pro3_variable_J_f6b` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Casp9Pro3_variable_Casp9Pro3` may be invalid.
    - Variable `value_component_Casp9Pro3_variable_Casp9Pro3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Casp9Pro3_variable_J_f6` may be invalid.
    - Variable `value_component_Casp9Pro3_variable_J_f6` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Pro3_variable_Pro3` may be invalid.
    - Variable `value_component_Pro3_variable_Pro3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Pro3_variable_J_6` may be invalid.
    - Variable `value_component_Pro3_variable_J_6` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Pro3_variable_J_Pro3` may be invalid.
    - Variable `value_component_Pro3_variable_J_Pro3` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_IAP` may be invalid.
    - Variable `value_component_IAP_variable_IAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_Casp9IAP` may be invalid.
    - Variable `value_component_IAP_variable_Casp9IAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_ApopCasp9IAP` may be invalid.
    - Variable `value_component_IAP_variable_ApopCasp9IAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_ApopCasp9_2IAP` may be invalid.
    - Variable `value_component_IAP_variable_ApopCasp9_2IAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_J_5` may be invalid.
    - Variable `value_component_IAP_variable_J_5` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_J_5b` may be invalid.
    - Variable `value_component_IAP_variable_J_5b` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_J_5c` may be invalid.
    - Variable `value_component_IAP_variable_J_5c` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_IAP_variable_J_IAP` may be invalid.
    - Variable `value_component_IAP_variable_J_IAP` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopCasp9_variable_ApopCasp9` may be invalid.
    - Variable `value_component_ApopCasp9_variable_ApopCasp9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopCasp9_variable_J_4` may be invalid.
    - Variable `value_component_ApopCasp9_variable_J_4` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopCasp9_variable_J_4b` may be invalid.
    - Variable `value_component_ApopCasp9_variable_J_4b` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Casp9_variable_Casp9` may be invalid.
    - Variable `value_component_Casp9_variable_Casp9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_Casp9_variable_J_Casp9` may be invalid.
    - Variable `value_component_Casp9_variable_J_Casp9` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_ApopCasp9_2_variable_ApopCasp9_2` may be invalid.
    - Variable `value_component_ApopCasp9_2_variable_ApopCasp9_2` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_constant_variable_k_10` may be invalid.
    - Variable `value_component_model_constant_variable_k_10` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_constant_variable_k_f0` may be invalid.
    - Variable `value_component_model_constant_variable_k_f0` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_constant_variable_k_01` may be invalid.
    - Variable `value_component_model_constant_variable_k_01` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_constant_variable_k_01b` may be invalid.
    - Variable `value_component_model_constant_variable_k_01b` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_constant_variable_k_02` may be invalid.
    - Variable `value_component_model_constant_variable_k_02` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_constant_variable_k_03` may be invalid.
    - Variable `value_component_model_constant_variable_k_03` may be invalid.
      - XPath could not be validated.
  - Data generator `data_generator_value_component_model_constant_variable_k_14` may be invalid.
    - Variable `value_component_model_constant_variable_k_14` may be invalid.
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  - Data generator `data_generator_value_component_model_constant_variable_k_14b` may be invalid.
    - Variable `value_component_model_constant_variable_k_14b` may be invalid.
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  - Data generator `data_generator_value_component_model_constant_variable_k_15` may be invalid.
    - Variable `value_component_model_constant_variable_k_15` may be invalid.
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  - Data generator `data_generator_value_component_model_constant_variable_k_15c` may be invalid.
    - Variable `value_component_model_constant_variable_k_15c` may be invalid.
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  - Data generator `data_generator_value_component_model_constant_variable_k_16` may be invalid.
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  - Data generator `data_generator_value_component_model_constant_variable_k_f6` may be invalid.
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  - Data generator `data_generator_value_component_model_constant_variable_k_06b` may be invalid.
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    - Variable `value_component_model_constant_variable_P_Cytc_mito` may be invalid.
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    - Variable `value_component_model_constant_variable_p53` may be invalid.
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  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive may be invalid.
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    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.
      - Variable `value_component_environment_variable_time` may be invalid.
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      - Variable `value_component_Casp8_variable_Casp8Bid` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp8_variable_J_0` may be invalid.
      - Variable `value_component_Casp8_variable_J_0` may be invalid.
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    - Data generator `data_generator_value_component_Casp8_variable_J_f0` may be invalid.
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      - Variable `value_component_Casp8_variable_J_Casp8` may be invalid.
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    - Data generator `data_generator_value_component_Apaf_1_variable_Apaf_1` may be invalid.
      - Variable `value_component_Apaf_1_variable_Apaf_1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Apaf_1_variable_J_Apaf_1` may be invalid.
      - Variable `value_component_Apaf_1_variable_J_Apaf_1` may be invalid.
        - XPath could not be validated.
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      - Variable `value_component_Apaf_1_variable_J_1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CytcApaf_1_variable_CytcApaf_1` may be invalid.
      - Variable `value_component_CytcApaf_1_variable_CytcApaf_1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_CytcApaf_1_variable_J_1b` may be invalid.
      - Variable `value_component_CytcApaf_1_variable_J_1b` may be invalid.
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    - Data generator `data_generator_value_component_Cytc_variable_Cytc` may be invalid.
      - Variable `value_component_Cytc_variable_Cytc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytc_variable_J_Cytc` may be invalid.
      - Variable `value_component_Cytc_variable_J_Cytc` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytc_mito_variable_Cytc_mito` may be invalid.
      - Variable `value_component_Cytc_mito_variable_Cytc_mito` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytc_mito_variable_J_14` may be invalid.
      - Variable `value_component_Cytc_mito_variable_J_14` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Cytc_mito_variable_J_Cytc_mito` may be invalid.
      - Variable `value_component_Cytc_mito_variable_J_Cytc_mito` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bax_2_variable_Bax_2` may be invalid.
      - Variable `value_component_Bax_2_variable_Bax_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bax_2_variable_J_Bax_2` may be invalid.
      - Variable `value_component_Bax_2_variable_J_Bax_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBid_mito_variable_tBid_mito` may be invalid.
      - Variable `value_component_tBid_mito_variable_tBid_mito` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBid_mito_variable_J_12a` may be invalid.
      - Variable `value_component_tBid_mito_variable_J_12a` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBid_mito_variable_J_tBid_mito` may be invalid.
      - Variable `value_component_tBid_mito_variable_J_tBid_mito` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBid_variable_tBid` may be invalid.
      - Variable `value_component_tBid_variable_tBid` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBid_variable_J_11` may be invalid.
      - Variable `value_component_tBid_variable_J_11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBid_variable_J_tBid` may be invalid.
      - Variable `value_component_tBid_variable_J_tBid` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBidBax_variable_tBidBax` may be invalid.
      - Variable `value_component_tBidBax_variable_tBidBax` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBidBax_variable_J_12b` may be invalid.
      - Variable `value_component_tBidBax_variable_J_12b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_tBidBax_variable_J_tBidBax` may be invalid.
      - Variable `value_component_tBidBax_variable_J_tBidBax` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bax_variable_Bax` may be invalid.
      - Variable `value_component_Bax_variable_Bax` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bax_variable_J_13` may be invalid.
      - Variable `value_component_Bax_variable_J_13` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bax_variable_J_Bax` may be invalid.
      - Variable `value_component_Bax_variable_J_Bax` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bax_variable_P_Bax` may be invalid.
      - Variable `value_component_Bax_variable_P_Bax` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bcl_2_variable_Bcl_2` may be invalid.
      - Variable `value_component_Bcl_2_variable_Bcl_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bcl_2_variable_J_9` may be invalid.
      - Variable `value_component_Bcl_2_variable_J_9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bcl_2_variable_J_Bcl_2` may be invalid.
      - Variable `value_component_Bcl_2_variable_J_Bcl_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Bcl_2_variable_P_Bcl_2` may be invalid.
      - Variable `value_component_Bcl_2_variable_P_Bcl_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp3Bcl_2_variable_Casp3Bcl_2` may be invalid.
      - Variable `value_component_Casp3Bcl_2_variable_Casp3Bcl_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp3Bcl_2_variable_J_f9` may be invalid.
      - Variable `value_component_Casp3Bcl_2_variable_J_f9` may be invalid.
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    - Data generator `data_generator_value_component_Casp3Bid_variable_Casp3Bid` may be invalid.
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      - Variable `value_component_Bid_variable_Bid` may be invalid.
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    - Data generator `data_generator_value_component_Bid_variable_J_Bid` may be invalid.
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    - Data generator `data_generator_value_component_Casp3_variable_Casp3` may be invalid.
      - Variable `value_component_Casp3_variable_Casp3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp3_variable_Casp3IAP` may be invalid.
      - Variable `value_component_Casp3_variable_Casp3IAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp3_variable_J_7` may be invalid.
      - Variable `value_component_Casp3_variable_J_7` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp3_variable_J_Casp3` may be invalid.
      - Variable `value_component_Casp3_variable_J_Casp3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Apop_variable_Apop` may be invalid.
      - Variable `value_component_Apop_variable_Apop` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro9_variable_Pro9` may be invalid.
      - Variable `value_component_Pro9_variable_Pro9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro9_variable_ApopPro9` may be invalid.
      - Variable `value_component_Pro9_variable_ApopPro9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro9_variable_J_2` may be invalid.
      - Variable `value_component_Pro9_variable_J_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro9_variable_J_3` may be invalid.
      - Variable `value_component_Pro9_variable_J_3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro9_variable_J_Pro9` may be invalid.
      - Variable `value_component_Pro9_variable_J_Pro9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopPro9_2_variable_ApopPro9_2` may be invalid.
      - Variable `value_component_ApopPro9_2_variable_ApopPro9_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopPro9_2_variable_J_f3` may be invalid.
      - Variable `value_component_ApopPro9_2_variable_J_f3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopCasp9_2Pro3_variable_ApopCasp9_2Pro3` may be invalid.
      - Variable `value_component_ApopCasp9_2Pro3_variable_ApopCasp9_2Pro3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopCasp9_2Pro3_variable_J_6b` may be invalid.
      - Variable `value_component_ApopCasp9_2Pro3_variable_J_6b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopCasp9_2Pro3_variable_J_f6b` may be invalid.
      - Variable `value_component_ApopCasp9_2Pro3_variable_J_f6b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp9Pro3_variable_Casp9Pro3` may be invalid.
      - Variable `value_component_Casp9Pro3_variable_Casp9Pro3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp9Pro3_variable_J_f6` may be invalid.
      - Variable `value_component_Casp9Pro3_variable_J_f6` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro3_variable_Pro3` may be invalid.
      - Variable `value_component_Pro3_variable_Pro3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro3_variable_J_6` may be invalid.
      - Variable `value_component_Pro3_variable_J_6` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Pro3_variable_J_Pro3` may be invalid.
      - Variable `value_component_Pro3_variable_J_Pro3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_IAP` may be invalid.
      - Variable `value_component_IAP_variable_IAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_Casp9IAP` may be invalid.
      - Variable `value_component_IAP_variable_Casp9IAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_ApopCasp9IAP` may be invalid.
      - Variable `value_component_IAP_variable_ApopCasp9IAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_ApopCasp9_2IAP` may be invalid.
      - Variable `value_component_IAP_variable_ApopCasp9_2IAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_J_5` may be invalid.
      - Variable `value_component_IAP_variable_J_5` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_J_5b` may be invalid.
      - Variable `value_component_IAP_variable_J_5b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_J_5c` may be invalid.
      - Variable `value_component_IAP_variable_J_5c` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_IAP_variable_J_IAP` may be invalid.
      - Variable `value_component_IAP_variable_J_IAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopCasp9_variable_ApopCasp9` may be invalid.
      - Variable `value_component_ApopCasp9_variable_ApopCasp9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopCasp9_variable_J_4` may be invalid.
      - Variable `value_component_ApopCasp9_variable_J_4` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopCasp9_variable_J_4b` may be invalid.
      - Variable `value_component_ApopCasp9_variable_J_4b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp9_variable_Casp9` may be invalid.
      - Variable `value_component_Casp9_variable_Casp9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_Casp9_variable_J_Casp9` may be invalid.
      - Variable `value_component_Casp9_variable_J_Casp9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_ApopCasp9_2_variable_ApopCasp9_2` may be invalid.
      - Variable `value_component_ApopCasp9_2_variable_ApopCasp9_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_10` may be invalid.
      - Variable `value_component_model_constant_variable_k_10` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_f0` may be invalid.
      - Variable `value_component_model_constant_variable_k_f0` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_01` may be invalid.
      - Variable `value_component_model_constant_variable_k_01` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_01b` may be invalid.
      - Variable `value_component_model_constant_variable_k_01b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_02` may be invalid.
      - Variable `value_component_model_constant_variable_k_02` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_03` may be invalid.
      - Variable `value_component_model_constant_variable_k_03` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_14` may be invalid.
      - Variable `value_component_model_constant_variable_k_14` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_14b` may be invalid.
      - Variable `value_component_model_constant_variable_k_14b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_15` may be invalid.
      - Variable `value_component_model_constant_variable_k_15` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_15b` may be invalid.
      - Variable `value_component_model_constant_variable_k_15b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_15c` may be invalid.
      - Variable `value_component_model_constant_variable_k_15c` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_16` may be invalid.
      - Variable `value_component_model_constant_variable_k_16` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_f6` may be invalid.
      - Variable `value_component_model_constant_variable_k_f6` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_06b` may be invalid.
      - Variable `value_component_model_constant_variable_k_06b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_17` may be invalid.
      - Variable `value_component_model_constant_variable_k_17` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_18` may be invalid.
      - Variable `value_component_model_constant_variable_k_18` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_f8` may be invalid.
      - Variable `value_component_model_constant_variable_k_f8` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_09` may be invalid.
      - Variable `value_component_model_constant_variable_k_09` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k11` may be invalid.
      - Variable `value_component_model_constant_variable_k11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k12b` may be invalid.
      - Variable `value_component_model_constant_variable_k12b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k14` may be invalid.
      - Variable `value_component_model_constant_variable_k14` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_00` may be invalid.
      - Variable `value_component_model_constant_variable_k_00` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_11` may be invalid.
      - Variable `value_component_model_constant_variable_k_11` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_11b` may be invalid.
      - Variable `value_component_model_constant_variable_k_11b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_12` may be invalid.
      - Variable `value_component_model_constant_variable_k_12` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_13` may be invalid.
      - Variable `value_component_model_constant_variable_k_13` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_f3` may be invalid.
      - Variable `value_component_model_constant_variable_k_f3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_04` may be invalid.
      - Variable `value_component_model_constant_variable_k_04` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_04b` may be invalid.
      - Variable `value_component_model_constant_variable_k_04b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_05` may be invalid.
      - Variable `value_component_model_constant_variable_k_05` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_05b` may be invalid.
      - Variable `value_component_model_constant_variable_k_05b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_05c` may be invalid.
      - Variable `value_component_model_constant_variable_k_05c` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_06` may be invalid.
      - Variable `value_component_model_constant_variable_k_06` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_16b` may be invalid.
      - Variable `value_component_model_constant_variable_k_16b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_f6b` may be invalid.
      - Variable `value_component_model_constant_variable_k_f6b` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_07` may be invalid.
      - Variable `value_component_model_constant_variable_k_07` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_08` may be invalid.
      - Variable `value_component_model_constant_variable_k_08` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_19` may be invalid.
      - Variable `value_component_model_constant_variable_k_19` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k_f9` may be invalid.
      - Variable `value_component_model_constant_variable_k_f9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k12a` may be invalid.
      - Variable `value_component_model_constant_variable_k12a` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_k13` may be invalid.
      - Variable `value_component_model_constant_variable_k13` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_p53_thresh` may be invalid.
      - Variable `value_component_model_constant_variable_p53_thresh` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_u` may be invalid.
      - Variable `value_component_model_constant_variable_u` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_u_Bax` may be invalid.
      - Variable `value_component_model_constant_variable_u_Bax` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_u_Bcl_2` may be invalid.
      - Variable `value_component_model_constant_variable_u_Bcl_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_Apaf_1` may be invalid.
      - Variable `value_component_model_constant_variable_P_Apaf_1` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_IAP` may be invalid.
      - Variable `value_component_model_constant_variable_P_IAP` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_Pro3` may be invalid.
      - Variable `value_component_model_constant_variable_P_Pro3` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_Pro9` may be invalid.
      - Variable `value_component_model_constant_variable_P_Pro9` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_Bid` may be invalid.
      - Variable `value_component_model_constant_variable_P_Bid` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_oBcl_2` may be invalid.
      - Variable `value_component_model_constant_variable_P_oBcl_2` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_oBax` may be invalid.
      - Variable `value_component_model_constant_variable_P_oBax` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_P_Cytc_mito` may be invalid.
      - Variable `value_component_model_constant_variable_P_Cytc_mito` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_p53` may be invalid.
      - Variable `value_component_model_constant_variable_p53` may be invalid.
        - XPath could not be validated.
    - Data generator `data_generator_value_component_model_constant_variable_p` may be invalid.
      - Variable `value_component_model_constant_variable_p` may be invalid.
        - XPath could not be validated.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:
  simulation_0.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 131 data sets

Executing SED-ML file 1: simulation_0.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m===================================================== Saving log ====================================================[0m
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Completed 100.2 KiB/100.2 KiB (956.7 KiB/s) with 1 file(s) remaining
upload: outputs/log.yml to s3://files.biosimulations.org/simulations/626173904679625b3246df8b/outputs/log.yml

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
