[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    472      0 --:--:-- --:--:-- --:--:--   474

100  271k  100  271k    0     0   656k      0 --:--:-- --:--:-- --:--:--  656k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 2 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 2
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 3 SED documents:
  SED documents (3):
    Succeeded: 3
    Skipped: 0
    Failed: 0
  Tasks (3):
    Succeeded: 3
    Skipped: 0
    Failed: 0
  Outputs (6):
    Succeeded: 6
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/README.html    
  inflating: contents/4p-r/4p-r_severe_rett_intact.set  
  inflating: contents/4p-r/4p-r_severe_rett_intact_DRUG.set  
  inflating: contents/4p-r/4p-r_intact_DRUG.set  
  inflating: contents/4p-r/4p-r.ode  
  inflating: contents/4p-r/4p-r_mod_rett_intact_DRUG.set  
  inflating: contents/4p-r/4p-r_vagotomized_DRUG.set  
  inflating: contents/4p-r/4p-r_intact.set  
  inflating: contents/4p-r/4p-r_mod_rett_vagotomized.set  
  inflating: contents/4p-r/4p-r_mod_rett_vagotomized_DRUG.set  
  inflating: contents/4p-r/4p-r_vagotomized.set  
  inflating: contents/4p-r/4p-r_severe_rett_vagotomized.set  
  inflating: contents/4p-r/4p-r_severe_rett_vagotomized_DRUG.set  
  inflating: contents/4p-r/4p-r_mod_rett_intact.set  
  inflating: contents/4p-e/4p-e_severe_rett_intact.set  
  inflating: contents/4p-e/4p-e_vagotomized_DRUG.set  
  inflating: contents/4p-e/4p-e_mod_rett_intact_DRUG.set  
  inflating: contents/4p-e/4p-e_severe_rett_vagotomized_DRUG.set  
  inflating: contents/4p-e/4p-e_severe_rett_intact_DRUG.set  
  inflating: contents/4p-e/4p-e_intact.set  
  inflating: contents/4p-e/4p-e.ode  
  inflating: contents/4p-e/4p-e_mod_rett_vagotomized.set  
  inflating: contents/4p-e/4p-e_vagotomized.set  
  inflating: contents/4p-e/4p-e_intact_DRUG.set  
  inflating: contents/4p-e/4p-e_mod_rett_intact.set  
  inflating: contents/4p-e/4p-e_mod_rett_vagotomized_DRUG.set  
  inflating: contents/4p-e/4p-e_severe_rett_vagotomized.set  
  inflating: contents/Matlab_scripts/orbit_tracker.m  
  inflating: contents/Matlab_scripts/traj_plotter_many.m  
  inflating: contents/Matlab_scripts/set_bar_graphs.m  
  inflating: contents/Matlab_scripts/rett_figure_script.m  
  inflating: contents/Matlab_scripts/traj_plotter.m  
  inflating: contents/3p/3p_mod_rett_vagotomized.set  
  inflating: contents/3p/3p_mod_rett_intact_DRUG.set  
  inflating: contents/3p/3p_intact.set  
  inflating: contents/3p/3p_severe_rett_intact.set  
  inflating: contents/3p/3p_severe_rett_vagotomized.set  
  inflating: contents/3p/3p_mod_rett_vagotomized_DRUG.set  
  inflating: contents/3p/3p_severe_rett_intact_DRUG.set  
  inflating: contents/3p/3p_mod_rett_intact.set  
  inflating: contents/3p/3p.ode      
  inflating: contents/3p/3p_vagotomized.set  
  inflating: contents/3p/3p_severe_rett_vagotomized_DRUG.set  
  inflating: contents/3p/3p_vagotomized_DRUG.set  
  inflating: contents/3p/3p_intact_DRUG.set  
  inflating: contents/clewley/RunXPP.m  
  inflating: contents/clewley/ChangeXPPsetFile.m  
  inflating: contents/clewley/ChangeXPPodeFile.m  
  inflating: contents/3p/3p.sedml    
  inflating: contents/4p-e/4p-e.sedml  
  inflating: contents/4p-r/4p-r.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/screenshot1.png  
  inflating: contents/screenshot2.png  
  inflating: contents/screenshot3.png  
  inflating: contents/manifest.xml   
Completed 9.3 KiB/~67.5 KiB (154.3 KiB/s) with ~14 file(s) remaining (calculating...)
upload: contents/3p/3p.sedml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p.sedml
Completed 9.3 KiB/~67.5 KiB (154.3 KiB/s) with ~13 file(s) remaining (calculating...)
Completed 13.9 KiB/479.4 KiB (132.8 KiB/s) with 55 file(s) remaining                 
upload: contents/3p/3p_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_intact.set
Completed 13.9 KiB/479.4 KiB (132.8 KiB/s) with 54 file(s) remaining
Completed 18.6 KiB/479.4 KiB (168.9 KiB/s) with 54 file(s) remaining
upload: contents/3p/3p_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_vagotomized.set
Completed 18.6 KiB/479.4 KiB (168.9 KiB/s) with 53 file(s) remaining
Completed 21.4 KiB/479.4 KiB (160.8 KiB/s) with 53 file(s) remaining
upload: contents/3p/3p.ode to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p.ode
Completed 21.4 KiB/479.4 KiB (160.8 KiB/s) with 52 file(s) remaining
Completed 26.0 KiB/479.4 KiB (189.0 KiB/s) with 52 file(s) remaining
upload: contents/3p/3p_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_intact_DRUG.set
Completed 26.0 KiB/479.4 KiB (189.0 KiB/s) with 51 file(s) remaining
Completed 30.6 KiB/479.4 KiB (218.2 KiB/s) with 51 file(s) remaining
upload: contents/3p/3p_severe_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_intact_DRUG.set
Completed 30.6 KiB/479.4 KiB (218.2 KiB/s) with 50 file(s) remaining
Completed 35.2 KiB/479.4 KiB (232.1 KiB/s) with 50 file(s) remaining
upload: contents/3p/3p_severe_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_intact.set
Completed 35.2 KiB/479.4 KiB (232.1 KiB/s) with 49 file(s) remaining
Completed 46.4 KiB/479.4 KiB (299.2 KiB/s) with 49 file(s) remaining
upload: contents/4p-e/4p-e.sedml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e.sedml
Completed 46.4 KiB/479.4 KiB (299.2 KiB/s) with 48 file(s) remaining
Completed 51.0 KiB/479.4 KiB (311.9 KiB/s) with 48 file(s) remaining
upload: contents/3p/3p_severe_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_vagotomized.set
Completed 51.0 KiB/479.4 KiB (311.9 KiB/s) with 47 file(s) remaining
Completed 55.6 KiB/479.4 KiB (335.8 KiB/s) with 47 file(s) remaining
upload: contents/3p/3p_severe_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_vagotomized_DRUG.set
Completed 55.6 KiB/479.4 KiB (335.8 KiB/s) with 46 file(s) remaining
Completed 61.1 KiB/479.4 KiB (344.9 KiB/s) with 46 file(s) remaining
upload: contents/4p-e/4p-e_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_intact.set
Completed 61.1 KiB/479.4 KiB (344.9 KiB/s) with 45 file(s) remaining
Completed 66.5 KiB/479.4 KiB (364.1 KiB/s) with 45 file(s) remaining
upload: contents/4p-e/4p-e_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_intact_DRUG.set
Completed 66.5 KiB/479.4 KiB (364.1 KiB/s) with 44 file(s) remaining
Completed 72.0 KiB/479.4 KiB (382.5 KiB/s) with 44 file(s) remaining
upload: contents/4p-e/4p-e_mod_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_intact.set
Completed 72.0 KiB/479.4 KiB (382.5 KiB/s) with 43 file(s) remaining
Completed 77.5 KiB/479.4 KiB (403.2 KiB/s) with 43 file(s) remaining
upload: contents/4p-e/4p-e_mod_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_intact_DRUG.set
Completed 77.5 KiB/479.4 KiB (403.2 KiB/s) with 42 file(s) remaining
Completed 82.2 KiB/479.4 KiB (420.2 KiB/s) with 42 file(s) remaining
upload: contents/3p/3p_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_vagotomized_DRUG.set
Completed 82.2 KiB/479.4 KiB (420.2 KiB/s) with 41 file(s) remaining
Completed 87.7 KiB/479.4 KiB (438.8 KiB/s) with 41 file(s) remaining
upload: contents/4p-e/4p-e_mod_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_vagotomized.set
Completed 87.7 KiB/479.4 KiB (438.8 KiB/s) with 40 file(s) remaining
Completed 93.2 KiB/479.4 KiB (458.5 KiB/s) with 40 file(s) remaining
upload: contents/4p-e/4p-e_mod_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_vagotomized_DRUG.set
Completed 93.2 KiB/479.4 KiB (458.5 KiB/s) with 39 file(s) remaining
Completed 96.7 KiB/479.4 KiB (470.8 KiB/s) with 39 file(s) remaining
upload: contents/4p-e/4p-e.ode to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e.ode
Completed 96.7 KiB/479.4 KiB (470.8 KiB/s) with 38 file(s) remaining
Completed 102.1 KiB/479.4 KiB (475.0 KiB/s) with 38 file(s) remaining
upload: contents/4p-e/4p-e_severe_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_intact.set
Completed 102.1 KiB/479.4 KiB (475.0 KiB/s) with 37 file(s) remaining
Completed 107.6 KiB/479.4 KiB (484.9 KiB/s) with 37 file(s) remaining
upload: contents/4p-e/4p-e_severe_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_intact_DRUG.set
Completed 107.6 KiB/479.4 KiB (484.9 KiB/s) with 36 file(s) remaining
Completed 113.1 KiB/479.4 KiB (478.6 KiB/s) with 36 file(s) remaining
upload: contents/4p-e/4p-e_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_vagotomized.set
Completed 113.1 KiB/479.4 KiB (478.6 KiB/s) with 35 file(s) remaining
Completed 116.6 KiB/479.4 KiB (478.2 KiB/s) with 35 file(s) remaining
upload: contents/4p-r/4p-r.ode to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r.ode
Completed 116.6 KiB/479.4 KiB (478.2 KiB/s) with 34 file(s) remaining
Completed 128.1 KiB/479.4 KiB (516.8 KiB/s) with 34 file(s) remaining
upload: contents/4p-r/4p-r.sedml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r.sedml
Completed 128.1 KiB/479.4 KiB (516.8 KiB/s) with 33 file(s) remaining
Completed 133.6 KiB/479.4 KiB (527.5 KiB/s) with 33 file(s) remaining
upload: contents/4p-e/4p-e_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_vagotomized_DRUG.set
Completed 133.6 KiB/479.4 KiB (527.5 KiB/s) with 32 file(s) remaining
Completed 139.0 KiB/479.4 KiB (543.6 KiB/s) with 32 file(s) remaining
upload: contents/4p-e/4p-e_severe_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_vagotomized.set
Completed 139.0 KiB/479.4 KiB (543.6 KiB/s) with 31 file(s) remaining
Completed 144.5 KiB/479.4 KiB (560.8 KiB/s) with 31 file(s) remaining
upload: contents/4p-e/4p-e_severe_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_vagotomized_DRUG.set
Completed 144.5 KiB/479.4 KiB (560.8 KiB/s) with 30 file(s) remaining
Completed 149.9 KiB/479.4 KiB (567.5 KiB/s) with 30 file(s) remaining
upload: contents/4p-r/4p-r_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_intact_DRUG.set
Completed 149.9 KiB/479.4 KiB (567.5 KiB/s) with 29 file(s) remaining
Completed 155.4 KiB/479.4 KiB (584.2 KiB/s) with 29 file(s) remaining
upload: contents/4p-r/4p-r_mod_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_intact.set
Completed 155.4 KiB/479.4 KiB (584.2 KiB/s) with 28 file(s) remaining
Completed 160.9 KiB/479.4 KiB (590.9 KiB/s) with 28 file(s) remaining
upload: contents/4p-r/4p-r_mod_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_intact_DRUG.set
Completed 160.9 KiB/479.4 KiB (590.9 KiB/s) with 27 file(s) remaining
Completed 166.3 KiB/479.4 KiB (591.6 KiB/s) with 27 file(s) remaining
upload: contents/4p-r/4p-r_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_intact.set
Completed 166.3 KiB/479.4 KiB (591.6 KiB/s) with 26 file(s) remaining
Completed 171.8 KiB/479.4 KiB (588.7 KiB/s) with 26 file(s) remaining
upload: contents/4p-r/4p-r_mod_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_vagotomized.set
Completed 171.8 KiB/479.4 KiB (588.7 KiB/s) with 25 file(s) remaining
Completed 176.4 KiB/479.4 KiB (577.3 KiB/s) with 25 file(s) remaining
upload: contents/3p/3p_mod_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_vagotomized.set
Completed 176.4 KiB/479.4 KiB (577.3 KiB/s) with 24 file(s) remaining
Completed 182.0 KiB/479.4 KiB (585.6 KiB/s) with 24 file(s) remaining
upload: contents/4p-r/4p-r_severe_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_intact_DRUG.set
Completed 182.0 KiB/479.4 KiB (585.6 KiB/s) with 23 file(s) remaining
Completed 187.5 KiB/479.4 KiB (599.3 KiB/s) with 23 file(s) remaining
upload: contents/4p-r/4p-r_severe_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_vagotomized_DRUG.set
Completed 187.5 KiB/479.4 KiB (599.3 KiB/s) with 22 file(s) remaining
Completed 192.9 KiB/479.4 KiB (602.8 KiB/s) with 22 file(s) remaining
upload: contents/4p-r/4p-r_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_vagotomized_DRUG.set
Completed 192.9 KiB/479.4 KiB (602.8 KiB/s) with 21 file(s) remaining
Completed 197.5 KiB/479.4 KiB (602.4 KiB/s) with 21 file(s) remaining
upload: contents/3p/3p_mod_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_intact.set
Completed 197.5 KiB/479.4 KiB (602.4 KiB/s) with 20 file(s) remaining
Completed 203.0 KiB/479.4 KiB (611.7 KiB/s) with 20 file(s) remaining
upload: contents/4p-r/4p-r_severe_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_vagotomized.set
Completed 203.0 KiB/479.4 KiB (611.7 KiB/s) with 19 file(s) remaining
Completed 208.5 KiB/479.4 KiB (606.4 KiB/s) with 19 file(s) remaining
upload: contents/4p-r/4p-r_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_vagotomized.set
Completed 208.5 KiB/479.4 KiB (606.4 KiB/s) with 18 file(s) remaining
Completed 213.1 KiB/479.4 KiB (607.5 KiB/s) with 18 file(s) remaining
upload: contents/3p/3p_mod_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_vagotomized_DRUG.set
Completed 213.1 KiB/479.4 KiB (607.5 KiB/s) with 17 file(s) remaining
Completed 218.6 KiB/479.4 KiB (619.2 KiB/s) with 17 file(s) remaining
upload: contents/4p-r/4p-r_mod_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_vagotomized_DRUG.set
Completed 218.6 KiB/479.4 KiB (619.2 KiB/s) with 16 file(s) remaining
Completed 224.2 KiB/479.4 KiB (620.7 KiB/s) with 16 file(s) remaining
upload: contents/4p-r/4p-r_severe_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_intact.set
Completed 224.2 KiB/479.4 KiB (620.7 KiB/s) with 15 file(s) remaining
Completed 228.8 KiB/479.4 KiB (628.7 KiB/s) with 15 file(s) remaining
upload: contents/3p/3p_mod_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_intact_DRUG.set
Completed 228.8 KiB/479.4 KiB (628.7 KiB/s) with 14 file(s) remaining
Completed 233.4 KiB/479.4 KiB (638.3 KiB/s) with 14 file(s) remaining
upload: contents/Matlab_scripts/orbit_tracker.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/orbit_tracker.m
Completed 233.4 KiB/479.4 KiB (638.3 KiB/s) with 13 file(s) remaining
Completed 238.3 KiB/479.4 KiB (647.1 KiB/s) with 13 file(s) remaining
upload: contents/Matlab_scripts/rett_figure_script.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/rett_figure_script.m
Completed 238.3 KiB/479.4 KiB (647.1 KiB/s) with 12 file(s) remaining
Completed 240.5 KiB/479.4 KiB (636.5 KiB/s) with 12 file(s) remaining
upload: contents/Matlab_scripts/traj_plotter_many.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/traj_plotter_many.m
Completed 240.5 KiB/479.4 KiB (636.5 KiB/s) with 11 file(s) remaining
Completed 242.0 KiB/479.4 KiB (638.0 KiB/s) with 11 file(s) remaining
upload: contents/Matlab_scripts/traj_plotter.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/traj_plotter.m
Completed 242.0 KiB/479.4 KiB (638.0 KiB/s) with 10 file(s) remaining
Completed 244.9 KiB/479.4 KiB (625.6 KiB/s) with 10 file(s) remaining
upload: contents/README.html to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/README.html
Completed 244.9 KiB/479.4 KiB (625.6 KiB/s) with 9 file(s) remaining
Completed 248.3 KiB/479.4 KiB (619.9 KiB/s) with 9 file(s) remaining
upload: contents/Matlab_scripts/set_bar_graphs.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/set_bar_graphs.m
Completed 248.3 KiB/479.4 KiB (619.9 KiB/s) with 8 file(s) remaining
Completed 254.7 KiB/479.4 KiB (632.7 KiB/s) with 8 file(s) remaining
upload: contents/clewley/ChangeXPPodeFile.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/clewley/ChangeXPPodeFile.m
Completed 254.7 KiB/479.4 KiB (632.7 KiB/s) with 7 file(s) remaining
Completed 262.6 KiB/479.4 KiB (632.9 KiB/s) with 7 file(s) remaining
upload: contents/clewley/ChangeXPPsetFile.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/clewley/ChangeXPPsetFile.m
Completed 262.6 KiB/479.4 KiB (632.9 KiB/s) with 6 file(s) remaining
Completed 266.4 KiB/479.4 KiB (637.9 KiB/s) with 6 file(s) remaining
upload: contents/clewley/RunXPP.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/clewley/RunXPP.m
Completed 266.4 KiB/479.4 KiB (637.9 KiB/s) with 5 file(s) remaining
Completed 294.8 KiB/479.4 KiB (688.8 KiB/s) with 5 file(s) remaining
upload: contents/screenshot1.png to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/screenshot1.png
Completed 294.8 KiB/479.4 KiB (688.8 KiB/s) with 4 file(s) remaining
Completed 319.7 KiB/479.4 KiB (736.1 KiB/s) with 4 file(s) remaining
upload: contents/screenshot3.png to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/screenshot3.png
Completed 319.7 KiB/479.4 KiB (736.1 KiB/s) with 3 file(s) remaining
Completed 348.5 KiB/479.4 KiB (797.1 KiB/s) with 3 file(s) remaining
upload: contents/screenshot2.png to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/screenshot2.png
Completed 348.5 KiB/479.4 KiB (797.1 KiB/s) with 2 file(s) remaining
Completed 472.7 KiB/479.4 KiB (1.0 MiB/s) with 2 file(s) remaining  
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/metadata.rdf
Completed 472.7 KiB/479.4 KiB (1.0 MiB/s) with 1 file(s) remaining
Completed 479.4 KiB/479.4 KiB (1.0 MiB/s) with 1 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/manifest.xml

[0;36m=================================================== Saving results ==================================================[0m
creating group /3p
creating group /3p/3p.sedml
creating dataset /3p/3p.sedml/plot, shape: (2, 1001), type: float64
dataset created, uuid: d-16efa956-224fafc1-fd37-72dc73-14b5ed, chunk_size: (2, 1001)
creating dataset /3p/3p.sedml/report, shape: (11, 1001), type: float64
dataset created, uuid: d-16efa956-224fafc1-4b98-04ac64-a29b4e, chunk_size: (11, 1001)
creating group /4p-e
creating group /4p-e/4p-e.sedml
creating dataset /4p-e/4p-e.sedml/plot, shape: (2, 1001), type: float64
dataset created, uuid: d-16efa956-224fafc1-6908-47138c-70f2b8, chunk_size: (2, 1001)
creating dataset /4p-e/4p-e.sedml/report, shape: (14, 1001), type: float64
dataset created, uuid: d-16efa956-224fafc1-b050-f17898-64a38a, chunk_size: (14, 1001)
creating group /4p-r
creating group /4p-r/4p-r.sedml
creating dataset /4p-r/4p-r.sedml/plot, shape: (2, 1001), type: float64
dataset created, uuid: d-16efa956-224fafc1-a2fc-2c3a85-ddd1c6, chunk_size: (2, 1001)
creating dataset /4p-r/4p-r.sedml/report, shape: (14, 1001), type: float64
dataset created, uuid: d-16efa956-224fafc1-c39f-94a100-709966, chunk_size: (14, 1001)
creating attribute combineArchiveLocation in /3p
creating attribute uri in /3p
creating attribute combineArchiveLocation in /3p/3p.sedml
creating attribute uri in /3p/3p.sedml
creating attribute _type in /3p/3p.sedml/plot
creating attribute sedmlDataSetDataTypes in /3p/3p.sedml/plot
creating attribute sedmlDataSetIds in /3p/3p.sedml/plot
creating attribute sedmlDataSetLabels in /3p/3p.sedml/plot
creating attribute sedmlDataSetNames in /3p/3p.sedml/plot
creating attribute sedmlDataSetShapes in /3p/3p.sedml/plot
creating attribute sedmlId in /3p/3p.sedml/plot
creating attribute uri in /3p/3p.sedml/plot
creating attribute _type in /3p/3p.sedml/report
creating attribute sedmlDataSetDataTypes in /3p/3p.sedml/report
creating attribute sedmlDataSetIds in /3p/3p.sedml/report
creating attribute sedmlDataSetLabels in /3p/3p.sedml/report
creating attribute sedmlDataSetNames in /3p/3p.sedml/report
creating attribute sedmlDataSetShapes in /3p/3p.sedml/report
creating attribute sedmlId in /3p/3p.sedml/report
creating attribute sedmlName in /3p/3p.sedml/report
creating attribute uri in /3p/3p.sedml/report
creating attribute combineArchiveLocation in /4p-e
creating attribute uri in /4p-e
creating attribute combineArchiveLocation in /4p-e/4p-e.sedml
creating attribute uri in /4p-e/4p-e.sedml
creating attribute _type in /4p-e/4p-e.sedml/plot
creating attribute sedmlDataSetDataTypes in /4p-e/4p-e.sedml/plot
creating attribute sedmlDataSetIds in /4p-e/4p-e.sedml/plot
creating attribute sedmlDataSetLabels in /4p-e/4p-e.sedml/plot
creating attribute sedmlDataSetNames in /4p-e/4p-e.sedml/plot
creating attribute sedmlDataSetShapes in /4p-e/4p-e.sedml/plot
creating attribute sedmlId in /4p-e/4p-e.sedml/plot
creating attribute uri in /4p-e/4p-e.sedml/plot
creating attribute _type in /4p-e/4p-e.sedml/report
creating attribute sedmlDataSetDataTypes in /4p-e/4p-e.sedml/report
creating attribute sedmlDataSetIds in /4p-e/4p-e.sedml/report
creating attribute sedmlDataSetLabels in /4p-e/4p-e.sedml/report
creating attribute sedmlDataSetNames in /4p-e/4p-e.sedml/report
creating attribute sedmlDataSetShapes in /4p-e/4p-e.sedml/report
creating attribute sedmlId in /4p-e/4p-e.sedml/report
creating attribute sedmlName in /4p-e/4p-e.sedml/report
creating attribute uri in /4p-e/4p-e.sedml/report
creating attribute combineArchiveLocation in /4p-r
creating attribute uri in /4p-r
creating attribute combineArchiveLocation in /4p-r/4p-r.sedml
creating attribute uri in /4p-r/4p-r.sedml
creating attribute _type in /4p-r/4p-r.sedml/plot
creating attribute sedmlDataSetDataTypes in /4p-r/4p-r.sedml/plot
creating attribute sedmlDataSetIds in /4p-r/4p-r.sedml/plot
creating attribute sedmlDataSetLabels in /4p-r/4p-r.sedml/plot
creating attribute sedmlDataSetNames in /4p-r/4p-r.sedml/plot
creating attribute sedmlDataSetShapes in /4p-r/4p-r.sedml/plot
creating attribute sedmlId in /4p-r/4p-r.sedml/plot
creating attribute uri in /4p-r/4p-r.sedml/plot
creating attribute _type in /4p-r/4p-r.sedml/report
creating attribute sedmlDataSetDataTypes in /4p-r/4p-r.sedml/report
creating attribute sedmlDataSetIds in /4p-r/4p-r.sedml/report
creating attribute sedmlDataSetLabels in /4p-r/4p-r.sedml/report
creating attribute sedmlDataSetNames in /4p-r/4p-r.sedml/report
creating attribute sedmlDataSetShapes in /4p-r/4p-r.sedml/report
creating attribute sedmlId in /4p-r/4p-r.sedml/report
creating attribute sedmlName in /4p-r/4p-r.sedml/report
creating attribute uri in /4p-r/4p-r.sedml/report
create_links: /
got link: 3p
got link: 4p-e
got link: 4p-r
create_links: /3p
got link: 3p.sedml
create_links: /3p/3p.sedml
got link: plot
got link: report
create_links: /4p-e
got link: 4p-e.sedml
create_links: /4p-e/4p-e.sedml
got link: plot
got link: report
create_links: /4p-r
got link: 4p-r.sedml
create_links: /4p-r/4p-r.sedml
got link: plot
got link: report
write_dataset src: /3p/3p.sedml/plot to tgt: /3p/3p.sedml/plot, shape: (2, 1001), type: float64
iterating over chunks for /3p/3p.sedml/plot
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /3p/3p.sedml/plot
write_dataset src: /3p/3p.sedml/report to tgt: /3p/3p.sedml/report, shape: (11, 1001), type: float64
iterating over chunks for /3p/3p.sedml/report
writing dataset data for slice: (slice(0, 11, 1), slice(0, 1001, 1))
done with dataload for /3p/3p.sedml/report
write_dataset src: /4p-e/4p-e.sedml/plot to tgt: /4p-e/4p-e.sedml/plot, shape: (2, 1001), type: float64
iterating over chunks for /4p-e/4p-e.sedml/plot
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /4p-e/4p-e.sedml/plot
write_dataset src: /4p-e/4p-e.sedml/report to tgt: /4p-e/4p-e.sedml/report, shape: (14, 1001), type: float64
iterating over chunks for /4p-e/4p-e.sedml/report
writing dataset data for slice: (slice(0, 14, 1), slice(0, 1001, 1))
done with dataload for /4p-e/4p-e.sedml/report
write_dataset src: /4p-r/4p-r.sedml/plot to tgt: /4p-r/4p-r.sedml/plot, shape: (2, 1001), type: float64
iterating over chunks for /4p-r/4p-r.sedml/plot
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /4p-r/4p-r.sedml/plot
write_dataset src: /4p-r/4p-r.sedml/report to tgt: /4p-r/4p-r.sedml/report, shape: (14, 1001), type: float64
iterating over chunks for /4p-r/4p-r.sedml/report
writing dataset data for slice: (slice(0, 14, 1), slice(0, 1001, 1))
done with dataload for /4p-r/4p-r.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42c5d8a14a834cbf3fbe

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
