[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 1 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 1
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/ca_bifurcation_xpp_TH.ode  
  inflating: contents/example_ca_sim_TH.m  
  inflating: contents/autoRespTypeDetection_TH.m  
  inflating: contents/README.txt     
  inflating: contents/Histogram_Figures/low_ip3_panel2.fig  
  inflating: contents/Histogram_Figures/all_ip3_panel3.fig  
  inflating: contents/Histogram_Figures/all_ip3_panel1.fig  
  inflating: contents/Histogram_Figures/all_ip3_panel2.fig  
  inflating: contents/Histogram_Figures/low_ip3_panel3.fig  
  inflating: contents/Histogram_Figures/low_ip3_panel1.fig  
  inflating: contents/Supporting_Functions/RunParallelFunc_TH.m  
  inflating: contents/Supporting_Functions/IP3Dyn_model_TH.m  
  inflating: contents/Supporting_Functions/PeakLatency_TH.m  
  inflating: contents/Supporting_Functions/plotCaAmountVsIP3Amount_TH.m  
  inflating: contents/Supporting_Functions/PeaksAndTroughs_TH.m  
  inflating: contents/Supporting_Functions/ip_function_TH.m  
  inflating: contents/Supporting_Functions/CaRiseAndDecay_TH.m  
  inflating: contents/Supporting_Functions/FourCaResponseTypes_TH.m  
  inflating: contents/Supporting_Functions/plotCa_TH.m  
  inflating: contents/Supporting_Functions/Official_Params_TH.m  
  inflating: contents/Supporting_Functions/Paper_Ca_ODE_TH.m  
  inflating: contents/Supporting_Functions/GenerateLegend_TH.m  
  inflating: contents/ca_bifurcation_xpp_TH.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/manifest.xml   
Completed 43.8 KiB/~258.1 KiB (563.3 KiB/s) with ~13 file(s) remaining (calculating...)
upload: contents/Histogram_Figures/all_ip3_panel1.fig to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Histogram_Figures/all_ip3_panel1.fig
Completed 43.8 KiB/~258.1 KiB (563.3 KiB/s) with ~12 file(s) remaining (calculating...)
Completed 87.5 KiB/300.8 KiB (737.3 KiB/s) with 24 file(s) remaining                   
upload: contents/Histogram_Figures/low_ip3_panel1.fig to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Histogram_Figures/low_ip3_panel1.fig
Completed 87.5 KiB/300.8 KiB (737.3 KiB/s) with 23 file(s) remaining
Completed 124.4 KiB/300.8 KiB (921.2 KiB/s) with 23 file(s) remaining
upload: contents/Histogram_Figures/all_ip3_panel3.fig to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Histogram_Figures/all_ip3_panel3.fig
Completed 124.4 KiB/300.8 KiB (921.2 KiB/s) with 22 file(s) remaining
Completed 126.3 KiB/300.8 KiB (895.3 KiB/s) with 22 file(s) remaining
upload: contents/Supporting_Functions/Paper_Ca_ODE_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/Paper_Ca_ODE_TH.m
Completed 126.3 KiB/300.8 KiB (895.3 KiB/s) with 21 file(s) remaining
Completed 127.8 KiB/300.8 KiB (785.6 KiB/s) with 21 file(s) remaining
upload: contents/Supporting_Functions/GenerateLegend_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/GenerateLegend_TH.m
Completed 127.8 KiB/300.8 KiB (785.6 KiB/s) with 20 file(s) remaining
Completed 134.7 KiB/300.8 KiB (801.8 KiB/s) with 20 file(s) remaining
upload: contents/Supporting_Functions/RunParallelFunc_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/RunParallelFunc_TH.m
Completed 134.7 KiB/300.8 KiB (801.8 KiB/s) with 19 file(s) remaining
Completed 171.6 KiB/300.8 KiB (999.3 KiB/s) with 19 file(s) remaining
upload: contents/Histogram_Figures/all_ip3_panel2.fig to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Histogram_Figures/all_ip3_panel2.fig
Completed 171.6 KiB/300.8 KiB (999.3 KiB/s) with 18 file(s) remaining
Completed 172.8 KiB/300.8 KiB (948.4 KiB/s) with 18 file(s) remaining
upload: contents/Supporting_Functions/Official_Params_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/Official_Params_TH.m
Completed 172.8 KiB/300.8 KiB (948.4 KiB/s) with 17 file(s) remaining
Completed 174.3 KiB/300.8 KiB (929.3 KiB/s) with 17 file(s) remaining
upload: contents/Supporting_Functions/IP3Dyn_model_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/IP3Dyn_model_TH.m
Completed 174.3 KiB/300.8 KiB (929.3 KiB/s) with 16 file(s) remaining
Completed 211.0 KiB/300.8 KiB (1.0 MiB/s) with 16 file(s) remaining  
upload: contents/Histogram_Figures/low_ip3_panel2.fig to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Histogram_Figures/low_ip3_panel2.fig
Completed 211.0 KiB/300.8 KiB (1.0 MiB/s) with 15 file(s) remaining
Completed 211.9 KiB/300.8 KiB (1.0 MiB/s) with 15 file(s) remaining
upload: contents/Supporting_Functions/PeakLatency_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/PeakLatency_TH.m
Completed 211.9 KiB/300.8 KiB (1.0 MiB/s) with 14 file(s) remaining
Completed 213.5 KiB/300.8 KiB (997.2 KiB/s) with 14 file(s) remaining
upload: contents/Supporting_Functions/ip_function_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/ip_function_TH.m
Completed 213.5 KiB/300.8 KiB (997.2 KiB/s) with 13 file(s) remaining
Completed 214.8 KiB/300.8 KiB (963.6 KiB/s) with 13 file(s) remaining
upload: contents/Supporting_Functions/plotCa_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/plotCa_TH.m
Completed 214.8 KiB/300.8 KiB (963.6 KiB/s) with 12 file(s) remaining
Completed 216.4 KiB/300.8 KiB (950.6 KiB/s) with 12 file(s) remaining
upload: contents/Supporting_Functions/PeaksAndTroughs_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/PeaksAndTroughs_TH.m
Completed 216.4 KiB/300.8 KiB (950.6 KiB/s) with 11 file(s) remaining
Completed 217.7 KiB/300.8 KiB (915.6 KiB/s) with 11 file(s) remaining
upload: contents/ca_bifurcation_xpp_TH.ode to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/ca_bifurcation_xpp_TH.ode
Completed 217.7 KiB/300.8 KiB (915.6 KiB/s) with 10 file(s) remaining
Completed 224.0 KiB/300.8 KiB (910.9 KiB/s) with 10 file(s) remaining
upload: contents/autoRespTypeDetection_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/autoRespTypeDetection_TH.m
Completed 224.0 KiB/300.8 KiB (910.9 KiB/s) with 9 file(s) remaining
Completed 225.3 KiB/300.8 KiB (910.7 KiB/s) with 9 file(s) remaining
upload: contents/Supporting_Functions/plotCaAmountVsIP3Amount_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/plotCaAmountVsIP3Amount_TH.m
Completed 225.3 KiB/300.8 KiB (910.7 KiB/s) with 8 file(s) remaining
Completed 228.3 KiB/300.8 KiB (918.4 KiB/s) with 8 file(s) remaining
upload: contents/example_ca_sim_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/example_ca_sim_TH.m
Completed 228.3 KiB/300.8 KiB (918.4 KiB/s) with 7 file(s) remaining
Completed 231.5 KiB/300.8 KiB (921.5 KiB/s) with 7 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/manifest.xml
Completed 231.5 KiB/300.8 KiB (921.5 KiB/s) with 6 file(s) remaining
Completed 235.7 KiB/300.8 KiB (931.9 KiB/s) with 6 file(s) remaining
upload: contents/ca_bifurcation_xpp_TH.sedml to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/ca_bifurcation_xpp_TH.sedml
Completed 235.7 KiB/300.8 KiB (931.9 KiB/s) with 5 file(s) remaining
Completed 236.7 KiB/300.8 KiB (844.6 KiB/s) with 5 file(s) remaining
upload: contents/README.txt to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/README.txt
Completed 236.7 KiB/300.8 KiB (844.6 KiB/s) with 4 file(s) remaining
Completed 238.3 KiB/300.8 KiB (822.9 KiB/s) with 4 file(s) remaining
upload: contents/Supporting_Functions/CaRiseAndDecay_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/CaRiseAndDecay_TH.m
Completed 238.3 KiB/300.8 KiB (822.9 KiB/s) with 3 file(s) remaining
Completed 253.0 KiB/300.8 KiB (864.4 KiB/s) with 3 file(s) remaining
upload: contents/Supporting_Functions/FourCaResponseTypes_TH.m to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Supporting_Functions/FourCaResponseTypes_TH.m
Completed 253.0 KiB/300.8 KiB (864.4 KiB/s) with 2 file(s) remaining
Completed 289.7 KiB/300.8 KiB (861.3 KiB/s) with 2 file(s) remaining
upload: contents/Histogram_Figures/low_ip3_panel3.fig to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/Histogram_Figures/low_ip3_panel3.fig
Completed 289.7 KiB/300.8 KiB (861.3 KiB/s) with 1 file(s) remaining
Completed 300.8 KiB/300.8 KiB (863.0 KiB/s) with 1 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42b687550e369891bb60/contents/metadata.rdf

[0;36m=================================================== Saving results ==================================================[0m
creating group /ca_bifurcation_xpp_TH.sedml
creating dataset /ca_bifurcation_xpp_TH.sedml/report, shape: (5, 1001), type: float64
dataset created, uuid: d-f2a3855f-2ac6a331-6b8a-91fcfb-21a0cf, chunk_size: (5, 1001)
creating attribute combineArchiveLocation in /ca_bifurcation_xpp_TH.sedml
creating attribute uri in /ca_bifurcation_xpp_TH.sedml
creating attribute _type in /ca_bifurcation_xpp_TH.sedml/report
creating attribute sedmlDataSetDataTypes in /ca_bifurcation_xpp_TH.sedml/report
creating attribute sedmlDataSetIds in /ca_bifurcation_xpp_TH.sedml/report
creating attribute sedmlDataSetLabels in /ca_bifurcation_xpp_TH.sedml/report
creating attribute sedmlDataSetNames in /ca_bifurcation_xpp_TH.sedml/report
creating attribute sedmlDataSetShapes in /ca_bifurcation_xpp_TH.sedml/report
creating attribute sedmlId in /ca_bifurcation_xpp_TH.sedml/report
creating attribute sedmlName in /ca_bifurcation_xpp_TH.sedml/report
creating attribute uri in /ca_bifurcation_xpp_TH.sedml/report
create_links: /
got link: ca_bifurcation_xpp_TH.sedml
create_links: /ca_bifurcation_xpp_TH.sedml
got link: report
write_dataset src: /ca_bifurcation_xpp_TH.sedml/report to tgt: /ca_bifurcation_xpp_TH.sedml/report, shape: (5, 1001), type: float64
iterating over chunks for /ca_bifurcation_xpp_TH.sedml/report
writing dataset data for slice: (slice(0, 5, 1), slice(0, 1001, 1))
done with dataload for /ca_bifurcation_xpp_TH.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42b687550e369891bb60

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
