[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 2 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 2
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 2 SED documents:
  SED documents (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0
  Tasks (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0
  Outputs (4):
    Succeeded: 4
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.txt     
  inflating: contents/spreading-depression-bistable-cont.ode  
  inflating: contents/spreading-depression.ode  
  inflating: contents/spreading-depression-bistable-cont.sedml  
  inflating: contents/spreading-depression.sedml  
  inflating: contents/metadata.rdf   
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Completed 92.0 KiB/1.2 MiB (1.1 MiB/s) with 18 file(s) remaining
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Completed 849.7 KiB/1.2 MiB (4.4 MiB/s) with 10 file(s) remaining
Completed 860.6 KiB/1.2 MiB (4.2 MiB/s) with 10 file(s) remaining
upload: contents/spreading-depression-bistable-cont.sedml to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/spreading-depression-bistable-cont.sedml
Completed 860.6 KiB/1.2 MiB (4.2 MiB/s) with 9 file(s) remaining
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Completed 938.7 KiB/1.2 MiB (4.4 MiB/s) with 8 file(s) remaining
upload: contents/spreading-depression.sedml to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/spreading-depression.sedml
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Completed 1.1 MiB/1.2 MiB (4.5 MiB/s) with 7 file(s) remaining  
upload: contents/article-figures/PMC4256015/pcbi.1003941.g002.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g002.jpg
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upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/metadata.rdf

[0;36m=================================================== Saving results ==================================================[0m
creating group /spreading-depression-bistable-cont.sedml
creating dataset /spreading-depression-bistable-cont.sedml/plot, shape: (4, 1001), type: float64
dataset created, uuid: d-127cb827-a0f416f8-97e0-994de2-ca3d83, chunk_size: (4, 1001)
creating dataset /spreading-depression-bistable-cont.sedml/report, shape: (20, 1001), type: float64
dataset created, uuid: d-127cb827-a0f416f8-5b7a-f0e349-b6bca4, chunk_size: (20, 1001)
creating group /spreading-depression.sedml
creating dataset /spreading-depression.sedml/plot, shape: (5, 1001), type: float64
dataset created, uuid: d-127cb827-a0f416f8-bb93-bfb9be-7d6e02, chunk_size: (5, 1001)
creating dataset /spreading-depression.sedml/report, shape: (23, 1001), type: float64
dataset created, uuid: d-127cb827-a0f416f8-3613-e6f8ef-529440, chunk_size: (23, 1001)
creating attribute combineArchiveLocation in /spreading-depression-bistable-cont.sedml
creating attribute uri in /spreading-depression-bistable-cont.sedml
creating attribute _type in /spreading-depression-bistable-cont.sedml/plot
creating attribute sedmlDataSetDataTypes in /spreading-depression-bistable-cont.sedml/plot
creating attribute sedmlDataSetIds in /spreading-depression-bistable-cont.sedml/plot
creating attribute sedmlDataSetLabels in /spreading-depression-bistable-cont.sedml/plot
creating attribute sedmlDataSetNames in /spreading-depression-bistable-cont.sedml/plot
creating attribute sedmlDataSetShapes in /spreading-depression-bistable-cont.sedml/plot
creating attribute sedmlId in /spreading-depression-bistable-cont.sedml/plot
creating attribute uri in /spreading-depression-bistable-cont.sedml/plot
creating attribute _type in /spreading-depression-bistable-cont.sedml/report
creating attribute sedmlDataSetDataTypes in /spreading-depression-bistable-cont.sedml/report
creating attribute sedmlDataSetIds in /spreading-depression-bistable-cont.sedml/report
creating attribute sedmlDataSetLabels in /spreading-depression-bistable-cont.sedml/report
creating attribute sedmlDataSetNames in /spreading-depression-bistable-cont.sedml/report
creating attribute sedmlDataSetShapes in /spreading-depression-bistable-cont.sedml/report
creating attribute sedmlId in /spreading-depression-bistable-cont.sedml/report
creating attribute sedmlName in /spreading-depression-bistable-cont.sedml/report
creating attribute uri in /spreading-depression-bistable-cont.sedml/report
creating attribute combineArchiveLocation in /spreading-depression.sedml
creating attribute uri in /spreading-depression.sedml
creating attribute _type in /spreading-depression.sedml/plot
creating attribute sedmlDataSetDataTypes in /spreading-depression.sedml/plot
creating attribute sedmlDataSetIds in /spreading-depression.sedml/plot
creating attribute sedmlDataSetLabels in /spreading-depression.sedml/plot
creating attribute sedmlDataSetNames in /spreading-depression.sedml/plot
creating attribute sedmlDataSetShapes in /spreading-depression.sedml/plot
creating attribute sedmlId in /spreading-depression.sedml/plot
creating attribute uri in /spreading-depression.sedml/plot
creating attribute _type in /spreading-depression.sedml/report
creating attribute sedmlDataSetDataTypes in /spreading-depression.sedml/report
creating attribute sedmlDataSetIds in /spreading-depression.sedml/report
creating attribute sedmlDataSetLabels in /spreading-depression.sedml/report
creating attribute sedmlDataSetNames in /spreading-depression.sedml/report
creating attribute sedmlDataSetShapes in /spreading-depression.sedml/report
creating attribute sedmlId in /spreading-depression.sedml/report
creating attribute sedmlName in /spreading-depression.sedml/report
creating attribute uri in /spreading-depression.sedml/report
create_links: /
got link: spreading-depression-bistable-cont.sedml
got link: spreading-depression.sedml
create_links: /spreading-depression-bistable-cont.sedml
got link: plot
got link: report
create_links: /spreading-depression.sedml
got link: plot
got link: report
write_dataset src: /spreading-depression-bistable-cont.sedml/plot to tgt: /spreading-depression-bistable-cont.sedml/plot, shape: (4, 1001), type: float64
iterating over chunks for /spreading-depression-bistable-cont.sedml/plot
writing dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))
done with dataload for /spreading-depression-bistable-cont.sedml/plot
write_dataset src: /spreading-depression-bistable-cont.sedml/report to tgt: /spreading-depression-bistable-cont.sedml/report, shape: (20, 1001), type: float64
iterating over chunks for /spreading-depression-bistable-cont.sedml/report
writing dataset data for slice: (slice(0, 20, 1), slice(0, 1001, 1))
done with dataload for /spreading-depression-bistable-cont.sedml/report
write_dataset src: /spreading-depression.sedml/plot to tgt: /spreading-depression.sedml/plot, shape: (5, 1001), type: float64
iterating over chunks for /spreading-depression.sedml/plot
writing dataset data for slice: (slice(0, 5, 1), slice(0, 1001, 1))
done with dataload for /spreading-depression.sedml/plot
write_dataset src: /spreading-depression.sedml/report to tgt: /spreading-depression.sedml/report, shape: (23, 1001), type: float64
iterating over chunks for /spreading-depression.sedml/report
writing dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))
done with dataload for /spreading-depression.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42b5d8a14a834cbf3ea3

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
