[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    471      0 --:--:-- --:--:-- --:--:--   472

100 11817  100 11817    0     0  26916      0 --:--:-- --:--:-- --:--:-- 26916

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 2 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 2
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 2 SED documents:
  SED documents (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0
  Tasks (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0
  Outputs (4):
    Succeeded: 4
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.txt     
  inflating: contents/continuations.ode  
  inflating: contents/time_series.ode  
  inflating: contents/continuations.sedml  
  inflating: contents/time_series.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/manifest.xml   
Completed 7.7 KiB/51.9 KiB (112.9 KiB/s) with 7 file(s) remaining
upload: contents/continuations.sedml to s3://files.biosimulations.org/simulations/621d42b5b50991044c79ade0/contents/continuations.sedml
Completed 7.7 KiB/51.9 KiB (112.9 KiB/s) with 6 file(s) remaining
Completed 8.5 KiB/51.9 KiB (80.1 KiB/s) with 6 file(s) remaining 
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42b5b50991044c79ade0/contents/manifest.xml
Completed 8.5 KiB/51.9 KiB (80.1 KiB/s) with 5 file(s) remaining
Completed 16.7 KiB/51.9 KiB (151.5 KiB/s) with 5 file(s) remaining
upload: contents/continuations.ode to s3://files.biosimulations.org/simulations/621d42b5b50991044c79ade0/contents/continuations.ode
Completed 16.7 KiB/51.9 KiB (151.5 KiB/s) with 4 file(s) remaining
Completed 34.4 KiB/51.9 KiB (292.1 KiB/s) with 4 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42b5b50991044c79ade0/contents/metadata.rdf
Completed 34.4 KiB/51.9 KiB (292.1 KiB/s) with 3 file(s) remaining
Completed 40.2 KiB/51.9 KiB (278.8 KiB/s) with 3 file(s) remaining
upload: contents/time_series.ode to s3://files.biosimulations.org/simulations/621d42b5b50991044c79ade0/contents/time_series.ode
Completed 40.2 KiB/51.9 KiB (278.8 KiB/s) with 2 file(s) remaining
Completed 49.0 KiB/51.9 KiB (333.8 KiB/s) with 2 file(s) remaining
upload: contents/time_series.sedml to s3://files.biosimulations.org/simulations/621d42b5b50991044c79ade0/contents/time_series.sedml
Completed 49.0 KiB/51.9 KiB (333.8 KiB/s) with 1 file(s) remaining
Completed 51.9 KiB/51.9 KiB (331.1 KiB/s) with 1 file(s) remaining
upload: contents/readme.txt to s3://files.biosimulations.org/simulations/621d42b5b50991044c79ade0/contents/readme.txt

[0;36m=================================================== Saving results ==================================================[0m
creating group /continuations.sedml
creating dataset /continuations.sedml/plot, shape: (4, 1001), type: float64
dataset created, uuid: d-d0af774b-e1ee5d37-5e54-79a04a-d108ea, chunk_size: (4, 1001)
creating dataset /continuations.sedml/report, shape: (15, 1001), type: float64
dataset created, uuid: d-d0af774b-e1ee5d37-6f7b-d2cb6f-7d4ef7, chunk_size: (15, 1001)
creating group /time_series.sedml
creating dataset /time_series.sedml/plot, shape: (5, 1001), type: float64
dataset created, uuid: d-d0af774b-e1ee5d37-94c6-b77d5d-032f1e, chunk_size: (5, 1001)
creating dataset /time_series.sedml/report, shape: (17, 1001), type: float64
dataset created, uuid: d-d0af774b-e1ee5d37-dcd6-b063ef-09cfb0, chunk_size: (17, 1001)
creating attribute combineArchiveLocation in /continuations.sedml
creating attribute uri in /continuations.sedml
creating attribute _type in /continuations.sedml/plot
creating attribute sedmlDataSetDataTypes in /continuations.sedml/plot
creating attribute sedmlDataSetIds in /continuations.sedml/plot
creating attribute sedmlDataSetLabels in /continuations.sedml/plot
creating attribute sedmlDataSetNames in /continuations.sedml/plot
creating attribute sedmlDataSetShapes in /continuations.sedml/plot
creating attribute sedmlId in /continuations.sedml/plot
creating attribute uri in /continuations.sedml/plot
creating attribute _type in /continuations.sedml/report
creating attribute sedmlDataSetDataTypes in /continuations.sedml/report
creating attribute sedmlDataSetIds in /continuations.sedml/report
creating attribute sedmlDataSetLabels in /continuations.sedml/report
creating attribute sedmlDataSetNames in /continuations.sedml/report
creating attribute sedmlDataSetShapes in /continuations.sedml/report
creating attribute sedmlId in /continuations.sedml/report
creating attribute sedmlName in /continuations.sedml/report
creating attribute uri in /continuations.sedml/report
creating attribute combineArchiveLocation in /time_series.sedml
creating attribute uri in /time_series.sedml
creating attribute _type in /time_series.sedml/plot
creating attribute sedmlDataSetDataTypes in /time_series.sedml/plot
creating attribute sedmlDataSetIds in /time_series.sedml/plot
creating attribute sedmlDataSetLabels in /time_series.sedml/plot
creating attribute sedmlDataSetNames in /time_series.sedml/plot
creating attribute sedmlDataSetShapes in /time_series.sedml/plot
creating attribute sedmlId in /time_series.sedml/plot
creating attribute uri in /time_series.sedml/plot
creating attribute _type in /time_series.sedml/report
creating attribute sedmlDataSetDataTypes in /time_series.sedml/report
creating attribute sedmlDataSetIds in /time_series.sedml/report
creating attribute sedmlDataSetLabels in /time_series.sedml/report
creating attribute sedmlDataSetNames in /time_series.sedml/report
creating attribute sedmlDataSetShapes in /time_series.sedml/report
creating attribute sedmlId in /time_series.sedml/report
creating attribute sedmlName in /time_series.sedml/report
creating attribute uri in /time_series.sedml/report
create_links: /
got link: continuations.sedml
got link: time_series.sedml
create_links: /continuations.sedml
got link: plot
got link: report
create_links: /time_series.sedml
got link: plot
got link: report
write_dataset src: /continuations.sedml/plot to tgt: /continuations.sedml/plot, shape: (4, 1001), type: float64
iterating over chunks for /continuations.sedml/plot
writing dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))
done with dataload for /continuations.sedml/plot
write_dataset src: /continuations.sedml/report to tgt: /continuations.sedml/report, shape: (15, 1001), type: float64
iterating over chunks for /continuations.sedml/report
writing dataset data for slice: (slice(0, 15, 1), slice(0, 1001, 1))
done with dataload for /continuations.sedml/report
write_dataset src: /time_series.sedml/plot to tgt: /time_series.sedml/plot, shape: (5, 1001), type: float64
iterating over chunks for /time_series.sedml/plot
writing dataset data for slice: (slice(0, 5, 1), slice(0, 1001, 1))
done with dataload for /time_series.sedml/plot
write_dataset src: /time_series.sedml/report to tgt: /time_series.sedml/report, shape: (17, 1001), type: float64
iterating over chunks for /time_series.sedml/report
writing dataset data for slice: (slice(0, 17, 1), slice(0, 1001, 1))
done with dataload for /time_series.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42b5b50991044c79ade0

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
