[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` has warnings.
    - The model file `OneCellTwoOsc.ode` has warnings.
      - The XPP file may be not be formulated correctly
        - CE is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive has warnings.
  - The SED-ML file at location `OneCellTwoOsc.sedml` has warnings.
    - Model `model` has warnings.
      - The model file `OneCellTwoOsc.ode` has warnings.
        - The XPP file may be not be formulated correctly
          - CE is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 3 tasks and 6 outputs:
    Tasks:
      Succeeded: 3
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 6
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (3):
    Succeeded: 3
    Skipped: 0
    Failed: 0
  Outputs (6):
    Succeeded: 6
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.html    
  inflating: contents/OneCellTwoOsc.ode.setdb  
  inflating: contents/OneCellTwoOsc.ode  
  inflating: contents/OneCellTwoOsc.ode.setsb  
  inflating: contents/OneCellTwoOsc.ode.setsdb  
  inflating: contents/OneCellTwoOsc.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/fig2a.png      
  inflating: contents/fig2b.png      
  inflating: contents/fig2c.png      
  inflating: contents/screenshot.png  
  inflating: contents/manifest.xml   
Completed 3.3 KiB/214.5 KiB (52.1 KiB/s) with 12 file(s) remaining
upload: contents/OneCellTwoOsc.ode.setdb to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode.setdb
Completed 3.3 KiB/214.5 KiB (52.1 KiB/s) with 11 file(s) remaining
Completed 6.5 KiB/214.5 KiB (62.2 KiB/s) with 11 file(s) remaining
upload: contents/OneCellTwoOsc.ode.setsb to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode.setsb
Completed 6.5 KiB/214.5 KiB (62.2 KiB/s) with 10 file(s) remaining
Completed 23.6 KiB/214.5 KiB (192.1 KiB/s) with 10 file(s) remaining
upload: contents/fig2b.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/fig2b.png
Completed 23.6 KiB/214.5 KiB (192.1 KiB/s) with 9 file(s) remaining
Completed 40.5 KiB/214.5 KiB (324.9 KiB/s) with 9 file(s) remaining
upload: contents/fig2c.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/fig2c.png
Completed 40.5 KiB/214.5 KiB (324.9 KiB/s) with 8 file(s) remaining
Completed 42.1 KiB/214.5 KiB (323.4 KiB/s) with 8 file(s) remaining
upload: contents/OneCellTwoOsc.ode to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode
Completed 42.1 KiB/214.5 KiB (323.4 KiB/s) with 7 file(s) remaining
Completed 43.2 KiB/214.5 KiB (326.8 KiB/s) with 7 file(s) remaining
upload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/readme.html
Completed 43.2 KiB/214.5 KiB (326.8 KiB/s) with 6 file(s) remaining
Completed 44.5 KiB/214.5 KiB (330.6 KiB/s) with 6 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/manifest.xml
Completed 44.5 KiB/214.5 KiB (330.6 KiB/s) with 5 file(s) remaining
Completed 63.7 KiB/214.5 KiB (432.7 KiB/s) with 5 file(s) remaining
upload: contents/OneCellTwoOsc.sedml to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.sedml
Completed 63.7 KiB/214.5 KiB (432.7 KiB/s) with 4 file(s) remaining
Completed 172.9 KiB/214.5 KiB (1.1 MiB/s) with 4 file(s) remaining 
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/metadata.rdf
Completed 172.9 KiB/214.5 KiB (1.1 MiB/s) with 3 file(s) remaining
Completed 176.1 KiB/214.5 KiB (1.1 MiB/s) with 3 file(s) remaining
upload: contents/OneCellTwoOsc.ode.setsdb to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode.setsdb
Completed 176.1 KiB/214.5 KiB (1.1 MiB/s) with 2 file(s) remaining
Completed 195.2 KiB/214.5 KiB (1.1 MiB/s) with 2 file(s) remaining
upload: contents/fig2a.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/fig2a.png
Completed 195.2 KiB/214.5 KiB (1.1 MiB/s) with 1 file(s) remaining
Completed 214.5 KiB/214.5 KiB (1.2 MiB/s) with 1 file(s) remaining
upload: contents/screenshot.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/screenshot.png

[0;36m=================================================== Saving results ==================================================[0m
creating group /OneCellTwoOsc.sedml
creating dataset /OneCellTwoOsc.sedml/plot_figure_2a, shape: (2, 1001), type: float64
dataset created, uuid: d-e44f8206-a9e03e2c-610c-b0f88a-7f7ea3, chunk_size: (2, 1001)
creating dataset /OneCellTwoOsc.sedml/plot_figure_2b, shape: (2, 1001), type: float64
dataset created, uuid: d-e44f8206-a9e03e2c-40cf-a9ee10-7060d8, chunk_size: (2, 1001)
creating dataset /OneCellTwoOsc.sedml/plot_figure_2c, shape: (2, 1001), type: float64
dataset created, uuid: d-e44f8206-a9e03e2c-87c5-aaac17-b08b5e, chunk_size: (2, 1001)
creating dataset /OneCellTwoOsc.sedml/report_figure_2a, shape: (9, 1001), type: float64
dataset created, uuid: d-e44f8206-a9e03e2c-03c9-7d5066-ba2ae5, chunk_size: (9, 1001)
creating dataset /OneCellTwoOsc.sedml/report_figure_2b, shape: (9, 1001), type: float64
dataset created, uuid: d-e44f8206-a9e03e2c-1a01-88aa5b-9a6ebb, chunk_size: (9, 1001)
creating dataset /OneCellTwoOsc.sedml/report_figure_2c, shape: (9, 1001), type: float64
dataset created, uuid: d-e44f8206-a9e03e2c-0f05-690687-ec2ddd, chunk_size: (9, 1001)
creating attribute combineArchiveLocation in /OneCellTwoOsc.sedml
creating attribute uri in /OneCellTwoOsc.sedml
creating attribute _type in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute sedmlId in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute sedmlName in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute uri in /OneCellTwoOsc.sedml/plot_figure_2a
creating attribute _type in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute sedmlId in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute sedmlName in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute uri in /OneCellTwoOsc.sedml/plot_figure_2b
creating attribute _type in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute sedmlId in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute sedmlName in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute uri in /OneCellTwoOsc.sedml/plot_figure_2c
creating attribute _type in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute sedmlId in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute sedmlName in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute uri in /OneCellTwoOsc.sedml/report_figure_2a
creating attribute _type in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute sedmlId in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute sedmlName in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute uri in /OneCellTwoOsc.sedml/report_figure_2b
creating attribute _type in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute sedmlId in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute sedmlName in /OneCellTwoOsc.sedml/report_figure_2c
creating attribute uri in /OneCellTwoOsc.sedml/report_figure_2c
create_links: /
got link: OneCellTwoOsc.sedml
create_links: /OneCellTwoOsc.sedml
got link: plot_figure_2a
got link: plot_figure_2b
got link: plot_figure_2c
got link: report_figure_2a
got link: report_figure_2b
got link: report_figure_2c
write_dataset src: /OneCellTwoOsc.sedml/plot_figure_2a to tgt: /OneCellTwoOsc.sedml/plot_figure_2a, shape: (2, 1001), type: float64
iterating over chunks for /OneCellTwoOsc.sedml/plot_figure_2a
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /OneCellTwoOsc.sedml/plot_figure_2a
write_dataset src: /OneCellTwoOsc.sedml/plot_figure_2b to tgt: /OneCellTwoOsc.sedml/plot_figure_2b, shape: (2, 1001), type: float64
iterating over chunks for /OneCellTwoOsc.sedml/plot_figure_2b
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /OneCellTwoOsc.sedml/plot_figure_2b
write_dataset src: /OneCellTwoOsc.sedml/plot_figure_2c to tgt: /OneCellTwoOsc.sedml/plot_figure_2c, shape: (2, 1001), type: float64
iterating over chunks for /OneCellTwoOsc.sedml/plot_figure_2c
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /OneCellTwoOsc.sedml/plot_figure_2c
write_dataset src: /OneCellTwoOsc.sedml/report_figure_2a to tgt: /OneCellTwoOsc.sedml/report_figure_2a, shape: (9, 1001), type: float64
iterating over chunks for /OneCellTwoOsc.sedml/report_figure_2a
writing dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))
done with dataload for /OneCellTwoOsc.sedml/report_figure_2a
write_dataset src: /OneCellTwoOsc.sedml/report_figure_2b to tgt: /OneCellTwoOsc.sedml/report_figure_2b, shape: (9, 1001), type: float64
iterating over chunks for /OneCellTwoOsc.sedml/report_figure_2b
writing dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))
done with dataload for /OneCellTwoOsc.sedml/report_figure_2b
write_dataset src: /OneCellTwoOsc.sedml/report_figure_2c to tgt: /OneCellTwoOsc.sedml/report_figure_2c, shape: (9, 1001), type: float64
iterating over chunks for /OneCellTwoOsc.sedml/report_figure_2c
writing dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))
done with dataload for /OneCellTwoOsc.sedml/report_figure_2c
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42b487550e369891bb28

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
