[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 1 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 1
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/DetailedModel.ode  
  inflating: contents/DetailedModel.nb  
  inflating: contents/DetailedModel.txt  
  inflating: contents/README.txt     
  inflating: contents/DetailedModel.m  
  inflating: contents/DetailedModel.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/article-figures/PMC3542529/msb201262-f1.jpg  
  inflating: contents/article-figures/PMC3542529/msb201262-f2.jpg  
  inflating: contents/article-figures/PMC3542529/msb201262-f3.jpg  
  inflating: contents/article-figures/PMC3542529/msb201262-f4.jpg  
  inflating: contents/article-figures/PMC3542529/msb201262-f5.jpg  
  inflating: contents/article-figures/PMC3542529/msb201262-f6.jpg  
  inflating: contents/manifest.xml   
Completed 52.2 KiB/1.7 MiB (690.2 KiB/s) with 14 file(s) remaining
upload: contents/DetailedModel.m to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/DetailedModel.m
Completed 52.2 KiB/1.7 MiB (690.2 KiB/s) with 13 file(s) remaining
Completed 308.2 KiB/1.7 MiB (3.2 MiB/s) with 13 file(s) remaining 
Completed 564.2 KiB/1.7 MiB (5.3 MiB/s) with 13 file(s) remaining 
Completed 574.4 KiB/1.7 MiB (3.7 MiB/s) with 13 file(s) remaining 
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/metadata.rdf
Completed 574.4 KiB/1.7 MiB (3.7 MiB/s) with 12 file(s) remaining
Completed 661.5 KiB/1.7 MiB (4.2 MiB/s) with 12 file(s) remaining
upload: contents/article-figures/PMC3542529/msb201262-f5.jpg to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/article-figures/PMC3542529/msb201262-f5.jpg
Completed 661.5 KiB/1.7 MiB (4.2 MiB/s) with 11 file(s) remaining
Completed 838.5 KiB/1.7 MiB (5.2 MiB/s) with 11 file(s) remaining
upload: contents/DetailedModel.txt to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/DetailedModel.txt
Completed 838.5 KiB/1.7 MiB (5.2 MiB/s) with 10 file(s) remaining
Completed 983.5 KiB/1.7 MiB (6.0 MiB/s) with 10 file(s) remaining
upload: contents/article-figures/PMC3542529/msb201262-f4.jpg to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/article-figures/PMC3542529/msb201262-f4.jpg
Completed 983.5 KiB/1.7 MiB (6.0 MiB/s) with 9 file(s) remaining
Completed 1015.8 KiB/1.7 MiB (6.1 MiB/s) with 9 file(s) remaining
upload: contents/DetailedModel.ode to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/DetailedModel.ode
Completed 1015.8 KiB/1.7 MiB (6.1 MiB/s) with 8 file(s) remaining
Completed 1.1 MiB/1.7 MiB (6.4 MiB/s) with 8 file(s) remaining   
upload: contents/article-figures/PMC3542529/msb201262-f6.jpg to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/article-figures/PMC3542529/msb201262-f6.jpg
Completed 1.1 MiB/1.7 MiB (6.4 MiB/s) with 7 file(s) remaining
Completed 1.1 MiB/1.7 MiB (6.4 MiB/s) with 7 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/manifest.xml
Completed 1.1 MiB/1.7 MiB (6.4 MiB/s) with 6 file(s) remaining
Completed 1.2 MiB/1.7 MiB (7.0 MiB/s) with 6 file(s) remaining
upload: contents/DetailedModel.nb to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/DetailedModel.nb
Completed 1.2 MiB/1.7 MiB (7.0 MiB/s) with 5 file(s) remaining
Completed 1.3 MiB/1.7 MiB (7.4 MiB/s) with 5 file(s) remaining
upload: contents/DetailedModel.sedml to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/DetailedModel.sedml
Completed 1.3 MiB/1.7 MiB (7.4 MiB/s) with 4 file(s) remaining
Completed 1.4 MiB/1.7 MiB (8.1 MiB/s) with 4 file(s) remaining
upload: contents/article-figures/PMC3542529/msb201262-f1.jpg to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/article-figures/PMC3542529/msb201262-f1.jpg
Completed 1.4 MiB/1.7 MiB (8.1 MiB/s) with 3 file(s) remaining
Completed 1.4 MiB/1.7 MiB (6.8 MiB/s) with 3 file(s) remaining
upload: contents/README.txt to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/README.txt
Completed 1.4 MiB/1.7 MiB (6.8 MiB/s) with 2 file(s) remaining
Completed 1.6 MiB/1.7 MiB (5.8 MiB/s) with 2 file(s) remaining
upload: contents/article-figures/PMC3542529/msb201262-f3.jpg to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/article-figures/PMC3542529/msb201262-f3.jpg
Completed 1.6 MiB/1.7 MiB (5.8 MiB/s) with 1 file(s) remaining
Completed 1.7 MiB/1.7 MiB (5.7 MiB/s) with 1 file(s) remaining
upload: contents/article-figures/PMC3542529/msb201262-f2.jpg to s3://files.biosimulations.org/simulations/621d42aeb50991044c79ad3a/contents/article-figures/PMC3542529/msb201262-f2.jpg

[0;36m=================================================== Saving results ==================================================[0m
creating group /DetailedModel.sedml
creating dataset /DetailedModel.sedml/report, shape: (181, 401), type: float64
dataset created, uuid: d-a28f0915-0b0557ed-3444-dec563-c90f49, chunk_size: (181, 401)
creating attribute combineArchiveLocation in /DetailedModel.sedml
creating attribute uri in /DetailedModel.sedml
creating attribute _type in /DetailedModel.sedml/report
creating attribute sedmlDataSetDataTypes in /DetailedModel.sedml/report
creating attribute sedmlDataSetIds in /DetailedModel.sedml/report
creating attribute sedmlDataSetLabels in /DetailedModel.sedml/report
creating attribute sedmlDataSetNames in /DetailedModel.sedml/report
creating attribute sedmlDataSetShapes in /DetailedModel.sedml/report
creating attribute sedmlId in /DetailedModel.sedml/report
creating attribute sedmlName in /DetailedModel.sedml/report
creating attribute uri in /DetailedModel.sedml/report
create_links: /
got link: DetailedModel.sedml
create_links: /DetailedModel.sedml
got link: report
write_dataset src: /DetailedModel.sedml/report to tgt: /DetailedModel.sedml/report, shape: (181, 401), type: float64
iterating over chunks for /DetailedModel.sedml/report
writing dataset data for slice: (slice(0, 181, 1), slice(0, 401, 1))
done with dataload for /DetailedModel.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42aeb50991044c79ad3a

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
