[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    491      0 --:--:-- --:--:-- --:--:--   492

100  771k  100  771k    0     0  1258k      0 --:--:-- --:--:-- --:--:-- 1258k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 1 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 1
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 2 SED documents:
  SED documents (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0
  Tasks (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0
  Outputs (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/README.txt     
  inflating: contents/FullModel_RK4_JBP.c  
  inflating: contents/One_full_cell_fixed_Ko_and_Nai.ode  
  inflating: contents/One_full_cell_with_dyn_ion_conc.ode  
  inflating: contents/One_full_cell_fixed_Ko_and_Nai.sedml  
  inflating: contents/One_full_cell_with_dyn_ion_conc.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/fig4A.jpg      
  inflating: contents/fig4B.jpg      
  inflating: contents/fig4C.jpg      
  inflating: contents/fig4D.jpg      
  inflating: contents/manifest.xml   
Completed 4.5 KiB/904.6 KiB (49.7 KiB/s) with 12 file(s) remaining
upload: contents/FullModel_RK4_JBP.c to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/FullModel_RK4_JBP.c
Completed 4.5 KiB/904.6 KiB (49.7 KiB/s) with 11 file(s) remaining
Completed 5.8 KiB/904.6 KiB (44.2 KiB/s) with 11 file(s) remaining
upload: contents/One_full_cell_fixed_Ko_and_Nai.ode to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/One_full_cell_fixed_Ko_and_Nai.ode
Completed 5.8 KiB/904.6 KiB (44.2 KiB/s) with 10 file(s) remaining
Completed 15.7 KiB/904.6 KiB (109.7 KiB/s) with 10 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/metadata.rdf
Completed 15.7 KiB/904.6 KiB (109.7 KiB/s) with 9 file(s) remaining
Completed 20.3 KiB/904.6 KiB (136.0 KiB/s) with 9 file(s) remaining
upload: contents/One_full_cell_with_dyn_ion_conc.sedml to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/One_full_cell_with_dyn_ion_conc.sedml
Completed 20.3 KiB/904.6 KiB (136.0 KiB/s) with 8 file(s) remaining
Completed 237.1 KiB/904.6 KiB (1.4 MiB/s) with 8 file(s) remaining 
upload: contents/fig4D.jpg to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/fig4D.jpg
Completed 237.1 KiB/904.6 KiB (1.4 MiB/s) with 7 file(s) remaining
Completed 451.2 KiB/904.6 KiB (2.6 MiB/s) with 7 file(s) remaining
upload: contents/fig4A.jpg to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/fig4A.jpg
Completed 451.2 KiB/904.6 KiB (2.6 MiB/s) with 6 file(s) remaining
Completed 452.5 KiB/904.6 KiB (2.4 MiB/s) with 6 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/manifest.xml
Completed 452.5 KiB/904.6 KiB (2.4 MiB/s) with 5 file(s) remaining
Completed 456.0 KiB/904.6 KiB (2.4 MiB/s) with 5 file(s) remaining
upload: contents/One_full_cell_fixed_Ko_and_Nai.sedml to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/One_full_cell_fixed_Ko_and_Nai.sedml
Completed 456.0 KiB/904.6 KiB (2.4 MiB/s) with 4 file(s) remaining
Completed 458.0 KiB/904.6 KiB (2.4 MiB/s) with 4 file(s) remaining
upload: contents/One_full_cell_with_dyn_ion_conc.ode to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/One_full_cell_with_dyn_ion_conc.ode
Completed 458.0 KiB/904.6 KiB (2.4 MiB/s) with 3 file(s) remaining
Completed 458.9 KiB/904.6 KiB (2.3 MiB/s) with 3 file(s) remaining
upload: contents/README.txt to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/README.txt
Completed 458.9 KiB/904.6 KiB (2.3 MiB/s) with 2 file(s) remaining
Completed 652.9 KiB/904.6 KiB (3.1 MiB/s) with 2 file(s) remaining
upload: contents/fig4B.jpg to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/fig4B.jpg
Completed 652.9 KiB/904.6 KiB (3.1 MiB/s) with 1 file(s) remaining
Completed 904.6 KiB/904.6 KiB (3.4 MiB/s) with 1 file(s) remaining
upload: contents/fig4C.jpg to s3://files.biosimulations.org/simulations/621d42ac87550e369891baa5/contents/fig4C.jpg

[0;36m=================================================== Saving results ==================================================[0m
creating group /One_full_cell_fixed_Ko_and_Nai.sedml
creating dataset /One_full_cell_fixed_Ko_and_Nai.sedml/report, shape: (4, 1001), type: float64
dataset created, uuid: d-41153605-85bb0f2b-576c-eab6c6-06a320, chunk_size: (4, 1001)
creating group /One_full_cell_with_dyn_ion_conc.sedml
creating dataset /One_full_cell_with_dyn_ion_conc.sedml/report, shape: (6, 1001), type: float64
dataset created, uuid: d-41153605-85bb0f2b-b4a5-eff28f-2b9a38, chunk_size: (6, 1001)
creating attribute combineArchiveLocation in /One_full_cell_fixed_Ko_and_Nai.sedml
creating attribute uri in /One_full_cell_fixed_Ko_and_Nai.sedml
creating attribute _type in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute sedmlDataSetDataTypes in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute sedmlDataSetIds in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute sedmlDataSetLabels in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute sedmlDataSetNames in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute sedmlDataSetShapes in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute sedmlId in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute sedmlName in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute uri in /One_full_cell_fixed_Ko_and_Nai.sedml/report
creating attribute combineArchiveLocation in /One_full_cell_with_dyn_ion_conc.sedml
creating attribute uri in /One_full_cell_with_dyn_ion_conc.sedml
creating attribute _type in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute sedmlDataSetDataTypes in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute sedmlDataSetIds in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute sedmlDataSetLabels in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute sedmlDataSetNames in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute sedmlDataSetShapes in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute sedmlId in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute sedmlName in /One_full_cell_with_dyn_ion_conc.sedml/report
creating attribute uri in /One_full_cell_with_dyn_ion_conc.sedml/report
create_links: /
got link: One_full_cell_fixed_Ko_and_Nai.sedml
got link: One_full_cell_with_dyn_ion_conc.sedml
create_links: /One_full_cell_fixed_Ko_and_Nai.sedml
got link: report
create_links: /One_full_cell_with_dyn_ion_conc.sedml
got link: report
write_dataset src: /One_full_cell_fixed_Ko_and_Nai.sedml/report to tgt: /One_full_cell_fixed_Ko_and_Nai.sedml/report, shape: (4, 1001), type: float64
iterating over chunks for /One_full_cell_fixed_Ko_and_Nai.sedml/report
writing dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))
done with dataload for /One_full_cell_fixed_Ko_and_Nai.sedml/report
write_dataset src: /One_full_cell_with_dyn_ion_conc.sedml/report to tgt: /One_full_cell_with_dyn_ion_conc.sedml/report, shape: (6, 1001), type: float64
iterating over chunks for /One_full_cell_with_dyn_ion_conc.sedml/report
writing dataset data for slice: (slice(0, 6, 1), slice(0, 1001, 1))
done with dataload for /One_full_cell_with_dyn_ion_conc.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42ac87550e369891baa5

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
