[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 1 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 1
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/Cressman_et_al_JCNS_1_reducedmodel.ode  
  inflating: contents/README.txt     
  inflating: contents/Cressman_et_al_JCNS_1_fullmodel_RK4.c  
  inflating: contents/Cressman_et_al_JCNS_1_reducedmodel.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/manifest.xml   
Completed 756 Bytes/17.7 KiB (5.7 KiB/s) with 6 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42aad8a14a834cbf3dfc/contents/manifest.xml
Completed 756 Bytes/17.7 KiB (5.7 KiB/s) with 5 file(s) remaining
Completed 7.5 KiB/17.7 KiB (56.2 KiB/s) with 5 file(s) remaining 
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42aad8a14a834cbf3dfc/contents/metadata.rdf
Completed 7.5 KiB/17.7 KiB (56.2 KiB/s) with 4 file(s) remaining
Completed 7.9 KiB/17.7 KiB (54.8 KiB/s) with 4 file(s) remaining
upload: contents/README.txt to s3://files.biosimulations.org/simulations/621d42aad8a14a834cbf3dfc/contents/README.txt
Completed 7.9 KiB/17.7 KiB (54.8 KiB/s) with 3 file(s) remaining
Completed 12.5 KiB/17.7 KiB (77.3 KiB/s) with 3 file(s) remaining
upload: contents/Cressman_et_al_JCNS_1_fullmodel_RK4.c to s3://files.biosimulations.org/simulations/621d42aad8a14a834cbf3dfc/contents/Cressman_et_al_JCNS_1_fullmodel_RK4.c
Completed 12.5 KiB/17.7 KiB (77.3 KiB/s) with 2 file(s) remaining
Completed 15.0 KiB/17.7 KiB (89.8 KiB/s) with 2 file(s) remaining
upload: contents/Cressman_et_al_JCNS_1_reducedmodel.sedml to s3://files.biosimulations.org/simulations/621d42aad8a14a834cbf3dfc/contents/Cressman_et_al_JCNS_1_reducedmodel.sedml
Completed 15.0 KiB/17.7 KiB (89.8 KiB/s) with 1 file(s) remaining
Completed 17.7 KiB/17.7 KiB (96.3 KiB/s) with 1 file(s) remaining
upload: contents/Cressman_et_al_JCNS_1_reducedmodel.ode to s3://files.biosimulations.org/simulations/621d42aad8a14a834cbf3dfc/contents/Cressman_et_al_JCNS_1_reducedmodel.ode

[0;36m=================================================== Saving results ==================================================[0m
creating group /Cressman_et_al_JCNS_1_reducedmodel.sedml
creating dataset /Cressman_et_al_JCNS_1_reducedmodel.sedml/report, shape: (3, 1001), type: float64
dataset created, uuid: d-e8e2cfd7-c9fb948b-f6c0-fbb904-2b5e4c, chunk_size: (3, 1001)
creating attribute combineArchiveLocation in /Cressman_et_al_JCNS_1_reducedmodel.sedml
creating attribute uri in /Cressman_et_al_JCNS_1_reducedmodel.sedml
creating attribute _type in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute sedmlDataSetDataTypes in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute sedmlDataSetIds in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute sedmlDataSetLabels in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute sedmlDataSetNames in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute sedmlDataSetShapes in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute sedmlId in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute sedmlName in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
creating attribute uri in /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
create_links: /
got link: Cressman_et_al_JCNS_1_reducedmodel.sedml
create_links: /Cressman_et_al_JCNS_1_reducedmodel.sedml
got link: report
write_dataset src: /Cressman_et_al_JCNS_1_reducedmodel.sedml/report to tgt: /Cressman_et_al_JCNS_1_reducedmodel.sedml/report, shape: (3, 1001), type: float64
iterating over chunks for /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
writing dataset data for slice: (slice(0, 3, 1), slice(0, 1001, 1))
done with dataload for /Cressman_et_al_JCNS_1_reducedmodel.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42aad8a14a834cbf3dfc

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
