[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    473      0 --:--:-- --:--:-- --:--:--   474

  0  201k    0   485    0     0   1190      0  0:02:53 --:--:--  0:02:53  1190
100  201k  100  201k    0     0   469k      0 --:--:-- --:--:-- --:--:-- 9138k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` has warnings.
    - The model file `HH-Vext.ode` has warnings.
      - The XPP file may be not be formulated correctly
        - VEX is a duplicate name
        - ITRP is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive has warnings.
  - The SED-ML file at location `HH-Vext.sedml` has warnings.
    - Model `model` has warnings.
      - The model file `HH-Vext.ode` has warnings.
        - The XPP file may be not be formulated correctly
          - VEX is a duplicate name
          - ITRP is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 2 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 2
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.html    
  inflating: contents/HH-Vext.ode    
  inflating: contents/CJP099026.pdf  
  inflating: contents/HH-Vext.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/screenshot.jpg  
  inflating: contents/manifest.xml   
Completed 1.1 KiB/306.5 KiB (11.9 KiB/s) with 7 file(s) remaining
upload: contents/HH-Vext.ode to s3://files.biosimulations.org/simulations/621d42aa87550e369891ba9b/contents/HH-Vext.ode
Completed 1.1 KiB/306.5 KiB (11.9 KiB/s) with 6 file(s) remaining
Completed 1.8 KiB/306.5 KiB (15.0 KiB/s) with 6 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42aa87550e369891ba9b/contents/manifest.xml
Completed 1.8 KiB/306.5 KiB (15.0 KiB/s) with 5 file(s) remaining
Completed 4.1 KiB/306.5 KiB (33.3 KiB/s) with 5 file(s) remaining
upload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42aa87550e369891ba9b/contents/readme.html
Completed 4.1 KiB/306.5 KiB (33.3 KiB/s) with 4 file(s) remaining
Completed 98.8 KiB/306.5 KiB (742.7 KiB/s) with 4 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42aa87550e369891ba9b/contents/metadata.rdf
Completed 98.8 KiB/306.5 KiB (742.7 KiB/s) with 3 file(s) remaining
Completed 103.4 KiB/306.5 KiB (639.5 KiB/s) with 3 file(s) remaining
upload: contents/HH-Vext.sedml to s3://files.biosimulations.org/simulations/621d42aa87550e369891ba9b/contents/HH-Vext.sedml
Completed 103.4 KiB/306.5 KiB (639.5 KiB/s) with 2 file(s) remaining
Completed 166.0 KiB/306.5 KiB (795.1 KiB/s) with 2 file(s) remaining
upload: contents/screenshot.jpg to s3://files.biosimulations.org/simulations/621d42aa87550e369891ba9b/contents/screenshot.jpg
Completed 166.0 KiB/306.5 KiB (795.1 KiB/s) with 1 file(s) remaining
Completed 306.5 KiB/306.5 KiB (1.2 MiB/s) with 1 file(s) remaining  
upload: contents/CJP099026.pdf to s3://files.biosimulations.org/simulations/621d42aa87550e369891ba9b/contents/CJP099026.pdf

[0;36m=================================================== Saving results ==================================================[0m
creating group /HH-Vext.sedml
creating dataset /HH-Vext.sedml/plot, shape: (2, 1001), type: float64
dataset created, uuid: d-9dcb1770-7ac7938f-0bd5-2fd836-8079eb, chunk_size: (2, 1001)
creating dataset /HH-Vext.sedml/report, shape: (7, 1001), type: float64
dataset created, uuid: d-9dcb1770-7ac7938f-1dd8-f7aaba-5ba345, chunk_size: (7, 1001)
creating attribute combineArchiveLocation in /HH-Vext.sedml
creating attribute uri in /HH-Vext.sedml
creating attribute _type in /HH-Vext.sedml/plot
creating attribute sedmlDataSetDataTypes in /HH-Vext.sedml/plot
creating attribute sedmlDataSetIds in /HH-Vext.sedml/plot
creating attribute sedmlDataSetLabels in /HH-Vext.sedml/plot
creating attribute sedmlDataSetNames in /HH-Vext.sedml/plot
creating attribute sedmlDataSetShapes in /HH-Vext.sedml/plot
creating attribute sedmlId in /HH-Vext.sedml/plot
creating attribute uri in /HH-Vext.sedml/plot
creating attribute _type in /HH-Vext.sedml/report
creating attribute sedmlDataSetDataTypes in /HH-Vext.sedml/report
creating attribute sedmlDataSetIds in /HH-Vext.sedml/report
creating attribute sedmlDataSetLabels in /HH-Vext.sedml/report
creating attribute sedmlDataSetNames in /HH-Vext.sedml/report
creating attribute sedmlDataSetShapes in /HH-Vext.sedml/report
creating attribute sedmlId in /HH-Vext.sedml/report
creating attribute sedmlName in /HH-Vext.sedml/report
creating attribute uri in /HH-Vext.sedml/report
create_links: /
got link: HH-Vext.sedml
create_links: /HH-Vext.sedml
got link: plot
got link: report
write_dataset src: /HH-Vext.sedml/plot to tgt: /HH-Vext.sedml/plot, shape: (2, 1001), type: float64
iterating over chunks for /HH-Vext.sedml/plot
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /HH-Vext.sedml/plot
write_dataset src: /HH-Vext.sedml/report to tgt: /HH-Vext.sedml/report, shape: (7, 1001), type: float64
iterating over chunks for /HH-Vext.sedml/report
writing dataset data for slice: (slice(0, 7, 1), slice(0, 1001, 1))
done with dataload for /HH-Vext.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42aa87550e369891ba9b

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
