[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    476      0 --:--:-- --:--:-- --:--:--   477

100  202k  100  202k    0     0   483k      0 --:--:-- --:--:-- --:--:--  483k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 2 tasks and 4 outputs:
    Tasks:
      Succeeded: 2
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 4
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 2 SED documents:
  SED documents (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0
  Tasks (3):
    Succeeded: 3
    Skipped: 0
    Failed: 0
  Outputs (6):
    Succeeded: 6
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.html    
  inflating: contents/rubin_terman_pd.ode.setpark  
  inflating: contents/rubin_terman_pd.ode  
  inflating: contents/rubin_terman_dbs.ode.set  
  inflating: contents/rubin_terman_dbs.ode  
  inflating: contents/rubin_terman_pd.ode.setnorm  
  inflating: contents/rubin_terman_dbs.sedml  
  inflating: contents/rubin_terman_pd.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/screenshot.jpg  
  inflating: contents/manifest.xml   
Completed 97.6 KiB/985.6 KiB (1.1 MiB/s) with 11 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/metadata.rdf
Completed 97.6 KiB/985.6 KiB (1.1 MiB/s) with 10 file(s) remaining
Completed 98.4 KiB/985.6 KiB (882.0 KiB/s) with 10 file(s) remaining
upload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/readme.html
Completed 98.4 KiB/985.6 KiB (882.0 KiB/s) with 9 file(s) remaining
Completed 354.4 KiB/985.6 KiB (2.9 MiB/s) with 9 file(s) remaining 
Completed 355.6 KiB/985.6 KiB (2.8 MiB/s) with 9 file(s) remaining 
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/manifest.xml
Completed 355.6 KiB/985.6 KiB (2.8 MiB/s) with 8 file(s) remaining
Completed 365.2 KiB/985.6 KiB (2.7 MiB/s) with 8 file(s) remaining
upload: contents/rubin_terman_dbs.ode to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/rubin_terman_dbs.ode
Completed 365.2 KiB/985.6 KiB (2.7 MiB/s) with 7 file(s) remaining
Completed 410.4 KiB/985.6 KiB (3.0 MiB/s) with 7 file(s) remaining
upload: contents/rubin_terman_pd.ode.setnorm to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/rubin_terman_pd.ode.setnorm
Completed 410.4 KiB/985.6 KiB (3.0 MiB/s) with 6 file(s) remaining
Completed 419.5 KiB/985.6 KiB (2.8 MiB/s) with 6 file(s) remaining
upload: contents/rubin_terman_pd.ode to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/rubin_terman_pd.ode
Completed 419.5 KiB/985.6 KiB (2.8 MiB/s) with 5 file(s) remaining
Completed 483.0 KiB/985.6 KiB (3.1 MiB/s) with 5 file(s) remaining
upload: contents/screenshot.jpg to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/screenshot.jpg
Completed 483.0 KiB/985.6 KiB (3.1 MiB/s) with 4 file(s) remaining
Completed 528.4 KiB/985.6 KiB (3.3 MiB/s) with 4 file(s) remaining
upload: contents/rubin_terman_dbs.ode.set to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/rubin_terman_dbs.ode.set
Completed 528.4 KiB/985.6 KiB (3.3 MiB/s) with 3 file(s) remaining
Completed 573.6 KiB/985.6 KiB (3.5 MiB/s) with 3 file(s) remaining
upload: contents/rubin_terman_pd.ode.setpark to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/rubin_terman_pd.ode.setpark
Completed 573.6 KiB/985.6 KiB (3.5 MiB/s) with 2 file(s) remaining
Completed 742.7 KiB/985.6 KiB (4.3 MiB/s) with 2 file(s) remaining
upload: contents/rubin_terman_pd.sedml to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/rubin_terman_pd.sedml
Completed 742.7 KiB/985.6 KiB (4.3 MiB/s) with 1 file(s) remaining
Completed 985.6 KiB/985.6 KiB (5.4 MiB/s) with 1 file(s) remaining
upload: contents/rubin_terman_dbs.sedml to s3://files.biosimulations.org/simulations/621d42a787550e369891ba80/contents/rubin_terman_dbs.sedml

[0;36m=================================================== Saving results ==================================================[0m
creating group /rubin_terman_dbs.sedml
creating dataset /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation, shape: (2, 1001), type: float64
dataset created, uuid: d-35b8f948-396ad1f9-0b13-657d26-8750de, chunk_size: (2, 1001)
creating dataset /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation, shape: (340, 1001), type: float64
dataset created, uuid: d-35b8f948-396ad1f9-8bdb-de9aeb-45ed84, chunk_size: (176, 1001)
creating group /rubin_terman_pd.sedml
creating dataset /rubin_terman_pd.sedml/plot_normal_figure_5c, shape: (2, 1001), type: float64
dataset created, uuid: d-35b8f948-396ad1f9-7638-585270-1aa4f7, chunk_size: (2, 1001)
creating dataset /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d, shape: (2, 1001), type: float64
dataset created, uuid: d-35b8f948-396ad1f9-a656-f011f6-aea55c, chunk_size: (2, 1001)
creating dataset /rubin_terman_pd.sedml/report_normal_figure_5c, shape: (337, 1001), type: float64
dataset created, uuid: d-35b8f948-396ad1f9-4011-0980dd-a165de, chunk_size: (176, 1001)
creating dataset /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d, shape: (337, 1001), type: float64
dataset created, uuid: d-35b8f948-396ad1f9-b9ed-1bea94-dde38c, chunk_size: (176, 1001)
creating attribute combineArchiveLocation in /rubin_terman_dbs.sedml
creating attribute uri in /rubin_terman_dbs.sedml
creating attribute _type in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetDataTypes in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetIds in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetLabels in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetNames in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetShapes in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute sedmlId in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute sedmlName in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute uri in /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
creating attribute _type in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetDataTypes in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetIds in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetLabels in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetNames in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute sedmlDataSetShapes in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute sedmlId in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute sedmlName in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute uri in /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
creating attribute combineArchiveLocation in /rubin_terman_pd.sedml
creating attribute uri in /rubin_terman_pd.sedml
creating attribute _type in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute sedmlDataSetDataTypes in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute sedmlDataSetIds in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute sedmlDataSetLabels in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute sedmlDataSetNames in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute sedmlDataSetShapes in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute sedmlId in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute sedmlName in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute uri in /rubin_terman_pd.sedml/plot_normal_figure_5c
creating attribute _type in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute sedmlDataSetDataTypes in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute sedmlDataSetIds in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute sedmlDataSetLabels in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute sedmlDataSetNames in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute sedmlDataSetShapes in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute sedmlId in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute sedmlName in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute uri in /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
creating attribute _type in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute sedmlDataSetDataTypes in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute sedmlDataSetIds in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute sedmlDataSetLabels in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute sedmlDataSetNames in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute sedmlDataSetShapes in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute sedmlId in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute sedmlName in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute uri in /rubin_terman_pd.sedml/report_normal_figure_5c
creating attribute _type in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute sedmlDataSetDataTypes in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute sedmlDataSetIds in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute sedmlDataSetLabels in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute sedmlDataSetNames in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute sedmlDataSetShapes in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute sedmlId in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute sedmlName in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
creating attribute uri in /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
create_links: /
got link: rubin_terman_dbs.sedml
got link: rubin_terman_pd.sedml
create_links: /rubin_terman_dbs.sedml
got link: plot_normal_with_periodic_dbs_stimulation
got link: report_normal_with_periodic_dbs_stimulation
create_links: /rubin_terman_pd.sedml
got link: plot_normal_figure_5c
got link: plot_parkinsons_disease_figure_5d
got link: report_normal_figure_5c
got link: report_parkinsons_disease_figure_5d
write_dataset src: /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation to tgt: /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation, shape: (2, 1001), type: float64
iterating over chunks for /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation
write_dataset src: /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation to tgt: /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation, shape: (340, 1001), type: float64
iterating over chunks for /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
writing dataset data for slice: (slice(0, 176, 1), slice(0, 1001, 1))
writing dataset data for slice: (slice(176, 340, 1), slice(0, 1001, 1))
done with dataload for /rubin_terman_dbs.sedml/report_normal_with_periodic_dbs_stimulation
write_dataset src: /rubin_terman_pd.sedml/plot_normal_figure_5c to tgt: /rubin_terman_pd.sedml/plot_normal_figure_5c, shape: (2, 1001), type: float64
iterating over chunks for /rubin_terman_pd.sedml/plot_normal_figure_5c
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
ERROR 2022-02-28 16:57:40,026 utillib.py:531 ERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-35b8f948-396ad1f9-b9ed-1bea94-dde38c/value?select=%5B176%3A337%2C0%3A1001%5D&domain=%2Fresults%2F621d42a787550e369891ba80 (Caused by ResponseError('too many 503 error responses',))
done with dataload for /rubin_terman_pd.sedml/plot_normal_figure_5c
write_dataset src: /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d to tgt: /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d, shape: (2, 1001), type: float64
iterating over chunks for /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d
write_dataset src: /rubin_terman_pd.sedml/report_normal_figure_5c to tgt: /rubin_terman_pd.sedml/report_normal_figure_5c, shape: (337, 1001), type: float64
iterating over chunks for /rubin_terman_pd.sedml/report_normal_figure_5c
writing dataset data for slice: (slice(0, 176, 1), slice(0, 1001, 1))
writing dataset data for slice: (slice(176, 337, 1), slice(0, 1001, 1))
done with dataload for /rubin_terman_pd.sedml/report_normal_figure_5c
write_dataset src: /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d to tgt: /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d, shape: (337, 1001), type: float64
iterating over chunks for /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
writing dataset data for slice: (slice(0, 176, 1), slice(0, 1001, 1))
ERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-35b8f948-396ad1f9-b9ed-1bea94-dde38c/value?select=%5B176%3A337%2C0%3A1001%5D&domain=%2Fresults%2F621d42a787550e369891ba80 (Caused by ResponseError('too many 503 error responses',))
done with dataload for /rubin_terman_pd.sedml/report_parkinsons_disease_figure_5d
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42a787550e369891ba80

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
  adding: outputs/log.yml (deflated 94%)
  adding: outputs/rubin_terman_pd.sedml/ (stored 0%)
  adding: outputs/rubin_terman_pd.sedml/plot_normal_figure_5c.pdf (deflated 23%)
  adding: outputs/rubin_terman_pd.sedml/plot_parkinsons_disease_figure_5d.pdf (deflated 23%)
  adding: outputs/rubin_terman_dbs.sedml/ (stored 0%)
  adding: outputs/rubin_terman_dbs.sedml/plot_normal_with_periodic_dbs_stimulation.pdf (deflated 15%)
  adding: outputs/reports.h5 (deflated 4%)
