[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    455      0 --:--:-- --:--:-- --:--:--   455

100 95962  100 95962    0     0   219k      0 --:--:-- --:--:-- --:--:--  219k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` has warnings.
    - The model file `HH-ext.ode` has warnings.
      - The XPP file may be not be formulated correctly
        - VEX is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive has warnings.
  - The SED-ML file at location `HH-ext.sedml` has warnings.
    - Model `model` has warnings.
      - The model file `HH-ext.ode` has warnings.
        - The XPP file may be not be formulated correctly
          - VEX is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 2 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 2
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.html    
  inflating: contents/HH-ext.ode     
  inflating: contents/HH-ext.sedml   
  inflating: contents/metadata.rdf   
  inflating: contents/HH-ext.JPG     
  inflating: contents/manifest.xml   
Completed 63.2 KiB/167.5 KiB (809.3 KiB/s) with 6 file(s) remaining
upload: contents/HH-ext.JPG to s3://files.biosimulations.org/simulations/621d42a387550e369891ba64/contents/HH-ext.JPG
Completed 63.2 KiB/167.5 KiB (809.3 KiB/s) with 5 file(s) remaining
Completed 64.1 KiB/167.5 KiB (633.1 KiB/s) with 5 file(s) remaining
upload: contents/HH-ext.ode to s3://files.biosimulations.org/simulations/621d42a387550e369891ba64/contents/HH-ext.ode
Completed 64.1 KiB/167.5 KiB (633.1 KiB/s) with 4 file(s) remaining
Completed 64.8 KiB/167.5 KiB (513.3 KiB/s) with 4 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42a387550e369891ba64/contents/manifest.xml
Completed 64.8 KiB/167.5 KiB (513.3 KiB/s) with 3 file(s) remaining
Completed 69.1 KiB/167.5 KiB (537.5 KiB/s) with 3 file(s) remaining
upload: contents/HH-ext.sedml to s3://files.biosimulations.org/simulations/621d42a387550e369891ba64/contents/HH-ext.sedml
Completed 69.1 KiB/167.5 KiB (537.5 KiB/s) with 2 file(s) remaining
Completed 70.7 KiB/167.5 KiB (506.2 KiB/s) with 2 file(s) remaining
upload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42a387550e369891ba64/contents/readme.html
Completed 70.7 KiB/167.5 KiB (506.2 KiB/s) with 1 file(s) remaining
Completed 167.5 KiB/167.5 KiB (1.1 MiB/s) with 1 file(s) remaining 
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42a387550e369891ba64/contents/metadata.rdf

[0;36m=================================================== Saving results ==================================================[0m
creating group /HH-ext.sedml
creating dataset /HH-ext.sedml/plot, shape: (2, 1001), type: float64
dataset created, uuid: d-c0207584-302683ae-42f4-088e11-21f931, chunk_size: (2, 1001)
creating dataset /HH-ext.sedml/report, shape: (6, 1001), type: float64
dataset created, uuid: d-c0207584-302683ae-f5b5-6d78d5-114808, chunk_size: (6, 1001)
creating attribute combineArchiveLocation in /HH-ext.sedml
creating attribute uri in /HH-ext.sedml
creating attribute _type in /HH-ext.sedml/plot
creating attribute sedmlDataSetDataTypes in /HH-ext.sedml/plot
creating attribute sedmlDataSetIds in /HH-ext.sedml/plot
creating attribute sedmlDataSetLabels in /HH-ext.sedml/plot
creating attribute sedmlDataSetNames in /HH-ext.sedml/plot
creating attribute sedmlDataSetShapes in /HH-ext.sedml/plot
creating attribute sedmlId in /HH-ext.sedml/plot
creating attribute uri in /HH-ext.sedml/plot
creating attribute _type in /HH-ext.sedml/report
creating attribute sedmlDataSetDataTypes in /HH-ext.sedml/report
creating attribute sedmlDataSetIds in /HH-ext.sedml/report
creating attribute sedmlDataSetLabels in /HH-ext.sedml/report
creating attribute sedmlDataSetNames in /HH-ext.sedml/report
creating attribute sedmlDataSetShapes in /HH-ext.sedml/report
creating attribute sedmlId in /HH-ext.sedml/report
creating attribute sedmlName in /HH-ext.sedml/report
creating attribute uri in /HH-ext.sedml/report
create_links: /
got link: HH-ext.sedml
create_links: /HH-ext.sedml
got link: plot
got link: report
write_dataset src: /HH-ext.sedml/plot to tgt: /HH-ext.sedml/plot, shape: (2, 1001), type: float64
iterating over chunks for /HH-ext.sedml/plot
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /HH-ext.sedml/plot
write_dataset src: /HH-ext.sedml/report to tgt: /HH-ext.sedml/report, shape: (6, 1001), type: float64
iterating over chunks for /HH-ext.sedml/report
writing dataset data for slice: (slice(0, 6, 1), slice(0, 1001, 1))
done with dataload for /HH-ext.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42a387550e369891ba64

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
