[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` has warnings.
    - The model file `NeuronKATP_Stoch.ode` has warnings.
      - The XPP file may be not be formulated correctly
        - GKC is a duplicate name
        - IATP is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive has warnings.
  - The SED-ML file at location `NeuronKATP_Stoch.sedml` has warnings.
    - Model `model` has warnings.
      - The model file `NeuronKATP_Stoch.ode` has warnings.
        - The XPP file may be not be formulated correctly
          - GKC is a duplicate name
          - IATP is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 1 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 1
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.html    
  inflating: contents/JNS_Katp.pdf   
  inflating: contents/NeuronKATP_Stoch.ode  
  inflating: contents/NeuronKATP_Stoch.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/Neuron_Figure.JPG  
  inflating: contents/manifest.xml   
Completed 256.0 KiB/1.3 MiB (2.7 MiB/s) with 7 file(s) remaining
Completed 264.9 KiB/1.3 MiB (2.6 MiB/s) with 7 file(s) remaining
upload: contents/NeuronKATP_Stoch.sedml to s3://files.biosimulations.org/simulations/621d42a187550e369891ba5d/contents/NeuronKATP_Stoch.sedml
Completed 264.9 KiB/1.3 MiB (2.6 MiB/s) with 6 file(s) remaining
Completed 520.9 KiB/1.3 MiB (5.0 MiB/s) with 6 file(s) remaining
Completed 776.9 KiB/1.3 MiB (7.1 MiB/s) with 6 file(s) remaining
Completed 1.0 MiB/1.3 MiB (9.3 MiB/s) with 6 file(s) remaining  
Completed 1.0 MiB/1.3 MiB (7.7 MiB/s) with 6 file(s) remaining  
upload: contents/NeuronKATP_Stoch.ode to s3://files.biosimulations.org/simulations/621d42a187550e369891ba5d/contents/NeuronKATP_Stoch.ode
Completed 1.0 MiB/1.3 MiB (7.7 MiB/s) with 5 file(s) remaining
Completed 1.0 MiB/1.3 MiB (5.7 MiB/s) with 5 file(s) remaining
upload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42a187550e369891ba5d/contents/readme.html
Completed 1.0 MiB/1.3 MiB (5.7 MiB/s) with 4 file(s) remaining
Completed 1.1 MiB/1.3 MiB (5.9 MiB/s) with 4 file(s) remaining
upload: contents/Neuron_Figure.JPG to s3://files.biosimulations.org/simulations/621d42a187550e369891ba5d/contents/Neuron_Figure.JPG
Completed 1.1 MiB/1.3 MiB (5.9 MiB/s) with 3 file(s) remaining
Completed 1.2 MiB/1.3 MiB (6.3 MiB/s) with 3 file(s) remaining
upload: contents/JNS_Katp.pdf to s3://files.biosimulations.org/simulations/621d42a187550e369891ba5d/contents/JNS_Katp.pdf
Completed 1.2 MiB/1.3 MiB (6.3 MiB/s) with 2 file(s) remaining
Completed 1.3 MiB/1.3 MiB (6.2 MiB/s) with 2 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42a187550e369891ba5d/contents/manifest.xml
Completed 1.3 MiB/1.3 MiB (6.2 MiB/s) with 1 file(s) remaining
Completed 1.3 MiB/1.3 MiB (5.8 MiB/s) with 1 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42a187550e369891ba5d/contents/metadata.rdf

[0;36m=================================================== Saving results ==================================================[0m
creating group /NeuronKATP_Stoch.sedml
creating dataset /NeuronKATP_Stoch.sedml/report, shape: (15, 1001), type: float64
dataset created, uuid: d-02f0fc30-6e034ffc-e3ce-e582b4-bbf6e4, chunk_size: (15, 1001)
creating attribute combineArchiveLocation in /NeuronKATP_Stoch.sedml
creating attribute uri in /NeuronKATP_Stoch.sedml
creating attribute _type in /NeuronKATP_Stoch.sedml/report
creating attribute sedmlDataSetDataTypes in /NeuronKATP_Stoch.sedml/report
creating attribute sedmlDataSetIds in /NeuronKATP_Stoch.sedml/report
creating attribute sedmlDataSetLabels in /NeuronKATP_Stoch.sedml/report
creating attribute sedmlDataSetNames in /NeuronKATP_Stoch.sedml/report
creating attribute sedmlDataSetShapes in /NeuronKATP_Stoch.sedml/report
creating attribute sedmlId in /NeuronKATP_Stoch.sedml/report
creating attribute sedmlName in /NeuronKATP_Stoch.sedml/report
creating attribute uri in /NeuronKATP_Stoch.sedml/report
create_links: /
got link: NeuronKATP_Stoch.sedml
create_links: /NeuronKATP_Stoch.sedml
got link: report
write_dataset src: /NeuronKATP_Stoch.sedml/report to tgt: /NeuronKATP_Stoch.sedml/report, shape: (15, 1001), type: float64
iterating over chunks for /NeuronKATP_Stoch.sedml/report
writing dataset data for slice: (slice(0, 15, 1), slice(0, 1001, 1))
done with dataload for /NeuronKATP_Stoch.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42a187550e369891ba5d

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
