[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 1 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 1
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/readme.html    
  inflating: contents/Yu_et_al_04_R15_model.ODE  
  inflating: contents/Yu_et_al_04_R15_model.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/demo.jpg       
  inflating: contents/manifest.xml   
Completed 5.6 KiB/223.1 KiB (46.5 KiB/s) with 6 file(s) remaining
upload: contents/Yu_et_al_04_R15_model.ODE to s3://files.biosimulations.org/simulations/621d42a0b50991044c79ace8/contents/Yu_et_al_04_R15_model.ODE
Completed 5.6 KiB/223.1 KiB (46.5 KiB/s) with 5 file(s) remaining
Completed 6.3 KiB/223.1 KiB (46.7 KiB/s) with 5 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42a0b50991044c79ace8/contents/manifest.xml
Completed 6.3 KiB/223.1 KiB (46.7 KiB/s) with 4 file(s) remaining
Completed 8.4 KiB/223.1 KiB (61.5 KiB/s) with 4 file(s) remaining
upload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42a0b50991044c79ace8/contents/readme.html
Completed 8.4 KiB/223.1 KiB (61.5 KiB/s) with 3 file(s) remaining
Completed 84.5 KiB/223.1 KiB (472.0 KiB/s) with 3 file(s) remaining
upload: contents/demo.jpg to s3://files.biosimulations.org/simulations/621d42a0b50991044c79ace8/contents/demo.jpg
Completed 84.5 KiB/223.1 KiB (472.0 KiB/s) with 2 file(s) remaining
Completed 99.5 KiB/223.1 KiB (439.6 KiB/s) with 2 file(s) remaining
upload: contents/Yu_et_al_04_R15_model.sedml to s3://files.biosimulations.org/simulations/621d42a0b50991044c79ace8/contents/Yu_et_al_04_R15_model.sedml
Completed 99.5 KiB/223.1 KiB (439.6 KiB/s) with 1 file(s) remaining
Completed 223.1 KiB/223.1 KiB (972.0 KiB/s) with 1 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42a0b50991044c79ace8/contents/metadata.rdf

[0;36m=================================================== Saving results ==================================================[0m
creating group /Yu_et_al_04_R15_model.sedml
creating dataset /Yu_et_al_04_R15_model.sedml/report, shape: (20, 1001), type: float64
dataset created, uuid: d-bedb6a9d-0edca46c-f01c-998e8a-7129e5, chunk_size: (20, 1001)
creating attribute combineArchiveLocation in /Yu_et_al_04_R15_model.sedml
creating attribute uri in /Yu_et_al_04_R15_model.sedml
creating attribute _type in /Yu_et_al_04_R15_model.sedml/report
creating attribute sedmlDataSetDataTypes in /Yu_et_al_04_R15_model.sedml/report
creating attribute sedmlDataSetIds in /Yu_et_al_04_R15_model.sedml/report
creating attribute sedmlDataSetLabels in /Yu_et_al_04_R15_model.sedml/report
creating attribute sedmlDataSetNames in /Yu_et_al_04_R15_model.sedml/report
creating attribute sedmlDataSetShapes in /Yu_et_al_04_R15_model.sedml/report
creating attribute sedmlId in /Yu_et_al_04_R15_model.sedml/report
creating attribute sedmlName in /Yu_et_al_04_R15_model.sedml/report
creating attribute uri in /Yu_et_al_04_R15_model.sedml/report
create_links: /
got link: Yu_et_al_04_R15_model.sedml
create_links: /Yu_et_al_04_R15_model.sedml
got link: report
write_dataset src: /Yu_et_al_04_R15_model.sedml/report to tgt: /Yu_et_al_04_R15_model.sedml/report, shape: (20, 1001), type: float64
iterating over chunks for /Yu_et_al_04_R15_model.sedml/report
writing dataset data for slice: (slice(0, 20, 1), slice(0, 1001, 1))
done with dataload for /Yu_et_al_04_R15_model.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d42a0b50991044c79ace8

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
