[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
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[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 2 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 2
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 5 SED documents:
  SED documents (5):
    Succeeded: 5
    Skipped: 0
    Failed: 0
  Tasks (5):
    Succeeded: 5
    Skipped: 0
    Failed: 0
  Outputs (7):
    Succeeded: 7
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/TypeISomaCable2NaPFig3.ode  
  inflating: contents/readme.txt     
  inflating: contents/TypeISomaCablePairFig4.ode  
  inflating: contents/TypeISomaCablewHCNFig3.ode  
  inflating: contents/TypeIISomaCablePairFig2.ode  
  inflating: contents/TypeIISomaPassiveCableFig1.ode  
  inflating: contents/TypeIISomaCablePairFig2.sedml  
  inflating: contents/TypeIISomaPassiveCableFig1.sedml  
  inflating: contents/TypeISomaCable2NaPFig3.sedml  
  inflating: contents/TypeISomaCablePairFig4.sedml  
  inflating: contents/TypeISomaCablewHCNFig3.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/manifest.xml   
Completed 104.1 KiB/372.7 KiB (1.2 MiB/s) with 13 file(s) remaining
upload: contents/TypeIISomaCablePairFig2.sedml to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeIISomaCablePairFig2.sedml
Completed 104.1 KiB/372.7 KiB (1.2 MiB/s) with 12 file(s) remaining
Completed 105.4 KiB/372.7 KiB (1.1 MiB/s) with 12 file(s) remaining
upload: contents/TypeIISomaPassiveCableFig1.ode to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeIISomaPassiveCableFig1.ode
Completed 105.4 KiB/372.7 KiB (1.1 MiB/s) with 11 file(s) remaining
Completed 113.9 KiB/372.7 KiB (820.8 KiB/s) with 11 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/metadata.rdf
Completed 113.9 KiB/372.7 KiB (820.8 KiB/s) with 10 file(s) remaining
Completed 116.1 KiB/372.7 KiB (744.9 KiB/s) with 10 file(s) remaining
upload: contents/TypeIISomaCablePairFig2.ode to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeIISomaCablePairFig2.ode
Completed 116.1 KiB/372.7 KiB (744.9 KiB/s) with 9 file(s) remaining
Completed 118.4 KiB/372.7 KiB (735.4 KiB/s) with 9 file(s) remaining
upload: contents/TypeISomaCablewHCNFig3.ode to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeISomaCablewHCNFig3.ode
Completed 118.4 KiB/372.7 KiB (735.4 KiB/s) with 8 file(s) remaining
Completed 150.6 KiB/372.7 KiB (894.4 KiB/s) with 8 file(s) remaining
upload: contents/TypeIISomaPassiveCableFig1.sedml to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeIISomaPassiveCableFig1.sedml
Completed 150.6 KiB/372.7 KiB (894.4 KiB/s) with 7 file(s) remaining
Completed 206.2 KiB/372.7 KiB (1.2 MiB/s) with 7 file(s) remaining  
upload: contents/TypeISomaCablewHCNFig3.sedml to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeISomaCablewHCNFig3.sedml
Completed 206.2 KiB/372.7 KiB (1.2 MiB/s) with 6 file(s) remaining
Completed 208.3 KiB/372.7 KiB (1.1 MiB/s) with 6 file(s) remaining
upload: contents/TypeISomaCablePairFig4.ode to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeISomaCablePairFig4.ode
Completed 208.3 KiB/372.7 KiB (1.1 MiB/s) with 5 file(s) remaining
Completed 209.8 KiB/372.7 KiB (1.1 MiB/s) with 5 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/manifest.xml
Completed 209.8 KiB/372.7 KiB (1.1 MiB/s) with 4 file(s) remaining
Completed 313.6 KiB/372.7 KiB (1.5 MiB/s) with 4 file(s) remaining
upload: contents/TypeISomaCablePairFig4.sedml to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeISomaCablePairFig4.sedml
Completed 313.6 KiB/372.7 KiB (1.5 MiB/s) with 3 file(s) remaining
Completed 369.7 KiB/372.7 KiB (1.8 MiB/s) with 3 file(s) remaining
upload: contents/TypeISomaCable2NaPFig3.sedml to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeISomaCable2NaPFig3.sedml
Completed 369.7 KiB/372.7 KiB (1.8 MiB/s) with 2 file(s) remaining
Completed 372.0 KiB/372.7 KiB (1.7 MiB/s) with 2 file(s) remaining
upload: contents/TypeISomaCable2NaPFig3.ode to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/TypeISomaCable2NaPFig3.ode
Completed 372.0 KiB/372.7 KiB (1.7 MiB/s) with 1 file(s) remaining
Completed 372.7 KiB/372.7 KiB (1.6 MiB/s) with 1 file(s) remaining
upload: contents/readme.txt to s3://files.biosimulations.org/simulations/621d429f87550e369891ba4b/contents/readme.txt

[0;36m=================================================== Saving results ==================================================[0m
creating group /TypeIISomaCablePairFig2.sedml
creating dataset /TypeIISomaCablePairFig2.sedml/report, shape: (214, 1001), type: float64
dataset created, uuid: d-3646ffb8-7c75f885-612a-cf718c-17f8e2, chunk_size: (214, 1001)
creating group /TypeIISomaPassiveCableFig1.sedml
creating dataset /TypeIISomaPassiveCableFig1.sedml/report, shape: (59, 1001), type: float64
dataset created, uuid: d-3646ffb8-7c75f885-c503-d40c7e-167d28, chunk_size: (59, 1001)
creating group /TypeISomaCable2NaPFig3.sedml
creating dataset /TypeISomaCable2NaPFig3.sedml/plot, shape: (2, 1001), type: float64
dataset created, uuid: d-3646ffb8-7c75f885-d847-f9364d-bb348e, chunk_size: (2, 1001)
creating dataset /TypeISomaCable2NaPFig3.sedml/report, shape: (112, 1001), type: float64
dataset created, uuid: d-3646ffb8-7c75f885-69b6-f6d00e-217758, chunk_size: (112, 1001)
creating group /TypeISomaCablePairFig4.sedml
creating dataset /TypeISomaCablePairFig4.sedml/report, shape: (213, 1001), type: float64
dataset created, uuid: d-3646ffb8-7c75f885-8efa-0137a5-98397a, chunk_size: (213, 1001)
creating group /TypeISomaCablewHCNFig3.sedml
creating dataset /TypeISomaCablewHCNFig3.sedml/plot, shape: (2, 1001), type: float64
dataset created, uuid: d-3646ffb8-7c75f885-50f8-4f142f-fc1562, chunk_size: (2, 1001)
creating dataset /TypeISomaCablewHCNFig3.sedml/report, shape: (112, 1001), type: float64
dataset created, uuid: d-3646ffb8-7c75f885-3713-170b47-c8f7d8, chunk_size: (112, 1001)
creating attribute combineArchiveLocation in /TypeIISomaCablePairFig2.sedml
creating attribute uri in /TypeIISomaCablePairFig2.sedml
creating attribute _type in /TypeIISomaCablePairFig2.sedml/report
creating attribute sedmlDataSetDataTypes in /TypeIISomaCablePairFig2.sedml/report
creating attribute sedmlDataSetIds in /TypeIISomaCablePairFig2.sedml/report
creating attribute sedmlDataSetLabels in /TypeIISomaCablePairFig2.sedml/report
creating attribute sedmlDataSetNames in /TypeIISomaCablePairFig2.sedml/report
creating attribute sedmlDataSetShapes in /TypeIISomaCablePairFig2.sedml/report
creating attribute sedmlId in /TypeIISomaCablePairFig2.sedml/report
creating attribute sedmlName in /TypeIISomaCablePairFig2.sedml/report
creating attribute uri in /TypeIISomaCablePairFig2.sedml/report
creating attribute combineArchiveLocation in /TypeIISomaPassiveCableFig1.sedml
creating attribute uri in /TypeIISomaPassiveCableFig1.sedml
creating attribute _type in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute sedmlDataSetDataTypes in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute sedmlDataSetIds in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute sedmlDataSetLabels in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute sedmlDataSetNames in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute sedmlDataSetShapes in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute sedmlId in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute sedmlName in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute uri in /TypeIISomaPassiveCableFig1.sedml/report
creating attribute combineArchiveLocation in /TypeISomaCable2NaPFig3.sedml
creating attribute uri in /TypeISomaCable2NaPFig3.sedml
creating attribute _type in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute sedmlDataSetDataTypes in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute sedmlDataSetIds in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute sedmlDataSetLabels in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute sedmlDataSetNames in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute sedmlDataSetShapes in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute sedmlId in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute uri in /TypeISomaCable2NaPFig3.sedml/plot
creating attribute _type in /TypeISomaCable2NaPFig3.sedml/report
creating attribute sedmlDataSetDataTypes in /TypeISomaCable2NaPFig3.sedml/report
creating attribute sedmlDataSetIds in /TypeISomaCable2NaPFig3.sedml/report
creating attribute sedmlDataSetLabels in /TypeISomaCable2NaPFig3.sedml/report
creating attribute sedmlDataSetNames in /TypeISomaCable2NaPFig3.sedml/report
creating attribute sedmlDataSetShapes in /TypeISomaCable2NaPFig3.sedml/report
creating attribute sedmlId in /TypeISomaCable2NaPFig3.sedml/report
creating attribute sedmlName in /TypeISomaCable2NaPFig3.sedml/report
creating attribute uri in /TypeISomaCable2NaPFig3.sedml/report
creating attribute combineArchiveLocation in /TypeISomaCablePairFig4.sedml
creating attribute uri in /TypeISomaCablePairFig4.sedml
creating attribute _type in /TypeISomaCablePairFig4.sedml/report
creating attribute sedmlDataSetDataTypes in /TypeISomaCablePairFig4.sedml/report
creating attribute sedmlDataSetIds in /TypeISomaCablePairFig4.sedml/report
creating attribute sedmlDataSetLabels in /TypeISomaCablePairFig4.sedml/report
creating attribute sedmlDataSetNames in /TypeISomaCablePairFig4.sedml/report
creating attribute sedmlDataSetShapes in /TypeISomaCablePairFig4.sedml/report
creating attribute sedmlId in /TypeISomaCablePairFig4.sedml/report
creating attribute sedmlName in /TypeISomaCablePairFig4.sedml/report
creating attribute uri in /TypeISomaCablePairFig4.sedml/report
creating attribute combineArchiveLocation in /TypeISomaCablewHCNFig3.sedml
creating attribute uri in /TypeISomaCablewHCNFig3.sedml
creating attribute _type in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute sedmlDataSetDataTypes in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute sedmlDataSetIds in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute sedmlDataSetLabels in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute sedmlDataSetNames in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute sedmlDataSetShapes in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute sedmlId in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute uri in /TypeISomaCablewHCNFig3.sedml/plot
creating attribute _type in /TypeISomaCablewHCNFig3.sedml/report
creating attribute sedmlDataSetDataTypes in /TypeISomaCablewHCNFig3.sedml/report
creating attribute sedmlDataSetIds in /TypeISomaCablewHCNFig3.sedml/report
creating attribute sedmlDataSetLabels in /TypeISomaCablewHCNFig3.sedml/report
creating attribute sedmlDataSetNames in /TypeISomaCablewHCNFig3.sedml/report
creating attribute sedmlDataSetShapes in /TypeISomaCablewHCNFig3.sedml/report
creating attribute sedmlId in /TypeISomaCablewHCNFig3.sedml/report
creating attribute sedmlName in /TypeISomaCablewHCNFig3.sedml/report
creating attribute uri in /TypeISomaCablewHCNFig3.sedml/report
create_links: /
got link: TypeIISomaCablePairFig2.sedml
got link: TypeIISomaPassiveCableFig1.sedml
got link: TypeISomaCable2NaPFig3.sedml
got link: TypeISomaCablePairFig4.sedml
got link: TypeISomaCablewHCNFig3.sedml
create_links: /TypeIISomaCablePairFig2.sedml
got link: report
create_links: /TypeIISomaPassiveCableFig1.sedml
got link: report
create_links: /TypeISomaCable2NaPFig3.sedml
got link: plot
got link: report
create_links: /TypeISomaCablePairFig4.sedml
got link: report
create_links: /TypeISomaCablewHCNFig3.sedml
got link: plot
got link: report
write_dataset src: /TypeIISomaCablePairFig2.sedml/report to tgt: /TypeIISomaCablePairFig2.sedml/report, shape: (214, 1001), type: float64
iterating over chunks for /TypeIISomaCablePairFig2.sedml/report
writing dataset data for slice: (slice(0, 214, 1), slice(0, 1001, 1))
done with dataload for /TypeIISomaCablePairFig2.sedml/report
write_dataset src: /TypeIISomaPassiveCableFig1.sedml/report to tgt: /TypeIISomaPassiveCableFig1.sedml/report, shape: (59, 1001), type: float64
iterating over chunks for /TypeIISomaPassiveCableFig1.sedml/report
writing dataset data for slice: (slice(0, 59, 1), slice(0, 1001, 1))
done with dataload for /TypeIISomaPassiveCableFig1.sedml/report
write_dataset src: /TypeISomaCable2NaPFig3.sedml/plot to tgt: /TypeISomaCable2NaPFig3.sedml/plot, shape: (2, 1001), type: float64
iterating over chunks for /TypeISomaCable2NaPFig3.sedml/plot
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /TypeISomaCable2NaPFig3.sedml/plot
write_dataset src: /TypeISomaCable2NaPFig3.sedml/report to tgt: /TypeISomaCable2NaPFig3.sedml/report, shape: (112, 1001), type: float64
iterating over chunks for /TypeISomaCable2NaPFig3.sedml/report
writing dataset data for slice: (slice(0, 112, 1), slice(0, 1001, 1))
done with dataload for /TypeISomaCable2NaPFig3.sedml/report
write_dataset src: /TypeISomaCablePairFig4.sedml/report to tgt: /TypeISomaCablePairFig4.sedml/report, shape: (213, 1001), type: float64
iterating over chunks for /TypeISomaCablePairFig4.sedml/report
writing dataset data for slice: (slice(0, 213, 1), slice(0, 1001, 1))
done with dataload for /TypeISomaCablePairFig4.sedml/report
write_dataset src: /TypeISomaCablewHCNFig3.sedml/plot to tgt: /TypeISomaCablewHCNFig3.sedml/plot, shape: (2, 1001), type: float64
iterating over chunks for /TypeISomaCablewHCNFig3.sedml/plot
writing dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))
done with dataload for /TypeISomaCablewHCNFig3.sedml/plot
write_dataset src: /TypeISomaCablewHCNFig3.sedml/report to tgt: /TypeISomaCablewHCNFig3.sedml/report, shape: (112, 1001), type: float64
iterating over chunks for /TypeISomaCablewHCNFig3.sedml/report
writing dataset data for slice: (slice(0, 112, 1), slice(0, 1001, 1))
done with dataload for /TypeISomaCablewHCNFig3.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d429f87550e369891ba4b

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
  adding: outputs/log.yml (deflated 94%)
  adding: outputs/reports.h5 (deflated 4%)
  adding: outputs/TypeISomaCable2NaPFig3.sedml/ (stored 0%)
  adding: outputs/TypeISomaCable2NaPFig3.sedml/plot.pdf (deflated 31%)
  adding: outputs/TypeISomaCablewHCNFig3.sedml/ (stored 0%)
  adding: outputs/TypeISomaCablewHCNFig3.sedml/plot.pdf (deflated 19%)
