[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m========================================== Downloading COMBINE/OMEX archive =========================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    451      0 --:--:-- --:--:-- --:--:--   452

100  304k  100  304k    0     0   687k      0 --:--:-- --:--:-- --:--:--  687k

[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================[0m
INFO:    Using cached SIF image
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mCOMBINE/OMEX archive has warnings.
  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
  - Model `model` has warnings.
    - The model file `booth_bose.ode` has warnings.
      - The XPP file may be not be formulated correctly
        - GKC is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe COMBINE/OMEX archive has warnings.
  - The SED-ML file at location `booth_bose.sedml` has warnings.
    - Model `model` has warnings.
      - The model file `booth_bose.ode` has warnings.
        - The XPP file may be not be formulated correctly
          - GKC is a duplicate name[0m
  warnings.warn(termcolor.colored(message, Colors.warning.value), category)
 [34msucceeded[0m

  Executed 1 tasks and 1 outputs:
    Tasks:
      Succeeded: 1
      Skipped: 0
      Failed: 0
    Outputs:
      Succeeded: 1
      Skipped: 0
      Failed: 0

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0


[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================[0m
Archive:  archive.omex
  inflating: contents/batch_a.hoc    
  inflating: contents/matrix.mod     
  inflating: contents/vecst.mod      
  inflating: contents/passiv.mod     
  inflating: contents/geneval_cvode.inc  
  inflating: contents/xpp.dat        
  inflating: contents/cal.mod        
  inflating: contents/README         
  inflating: contents/booth_bose.ode  
  inflating: contents/nafPR.mod      
  inflating: contents/xtmp           
  inflating: contents/rcadecay.mod   
  inflating: contents/kcRT03.mod     
  inflating: contents/rkq.mod        
  inflating: contents/mosinit.hoc    
  inflating: contents/kdr.mod        
  inflating: contents/booth_bose.sedml  
  inflating: contents/metadata.rdf   
  inflating: contents/manifest.xml   
Completed 1.8 KiB/850.1 KiB (10.9 KiB/s) with 19 file(s) remaining
upload: contents/booth_bose.ode to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/booth_bose.ode
Completed 1.8 KiB/850.1 KiB (10.9 KiB/s) with 18 file(s) remaining
Completed 8.6 KiB/850.1 KiB (48.2 KiB/s) with 18 file(s) remaining
upload: contents/booth_bose.sedml to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/booth_bose.sedml
Completed 8.6 KiB/850.1 KiB (48.2 KiB/s) with 17 file(s) remaining
Completed 12.9 KiB/850.1 KiB (70.4 KiB/s) with 17 file(s) remaining
upload: contents/README to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/README
Completed 12.9 KiB/850.1 KiB (70.4 KiB/s) with 16 file(s) remaining
Completed 13.0 KiB/850.1 KiB (68.7 KiB/s) with 16 file(s) remaining
upload: contents/mosinit.hoc to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/mosinit.hoc
Completed 13.0 KiB/850.1 KiB (68.7 KiB/s) with 15 file(s) remaining
Completed 21.2 KiB/850.1 KiB (106.0 KiB/s) with 15 file(s) remaining
upload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/metadata.rdf
Completed 21.2 KiB/850.1 KiB (106.0 KiB/s) with 14 file(s) remaining
Completed 177.3 KiB/850.1 KiB (876.9 KiB/s) with 14 file(s) remaining
upload: contents/batch_a.hoc to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/batch_a.hoc
Completed 177.3 KiB/850.1 KiB (876.9 KiB/s) with 13 file(s) remaining
Completed 180.4 KiB/850.1 KiB (838.2 KiB/s) with 13 file(s) remaining
upload: contents/nafPR.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/nafPR.mod
Completed 180.4 KiB/850.1 KiB (838.2 KiB/s) with 12 file(s) remaining
Completed 190.9 KiB/850.1 KiB (865.0 KiB/s) with 12 file(s) remaining
upload: contents/matrix.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/matrix.mod
Completed 190.9 KiB/850.1 KiB (865.0 KiB/s) with 11 file(s) remaining
Completed 446.9 KiB/850.1 KiB (1.9 MiB/s) with 11 file(s) remaining  
Completed 702.9 KiB/850.1 KiB (3.0 MiB/s) with 11 file(s) remaining  
Completed 706.0 KiB/850.1 KiB (2.7 MiB/s) with 11 file(s) remaining  
upload: contents/passiv.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/passiv.mod
Completed 706.0 KiB/850.1 KiB (2.7 MiB/s) with 10 file(s) remaining
Completed 708.0 KiB/850.1 KiB (2.6 MiB/s) with 10 file(s) remaining
upload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/manifest.xml
Completed 708.0 KiB/850.1 KiB (2.6 MiB/s) with 9 file(s) remaining
upload: contents/xtmp to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/xtmp
Completed 708.0 KiB/850.1 KiB (2.6 MiB/s) with 8 file(s) remaining
Completed 708.6 KiB/850.1 KiB (2.4 MiB/s) with 8 file(s) remaining
upload: contents/rcadecay.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/rcadecay.mod
Completed 708.6 KiB/850.1 KiB (2.4 MiB/s) with 7 file(s) remaining
Completed 709.4 KiB/850.1 KiB (2.4 MiB/s) with 7 file(s) remaining
upload: contents/rkq.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/rkq.mod
Completed 709.4 KiB/850.1 KiB (2.4 MiB/s) with 6 file(s) remaining
Completed 710.0 KiB/850.1 KiB (2.3 MiB/s) with 6 file(s) remaining
upload: contents/kdr.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/kdr.mod
Completed 710.0 KiB/850.1 KiB (2.3 MiB/s) with 5 file(s) remaining
Completed 743.2 KiB/850.1 KiB (2.2 MiB/s) with 5 file(s) remaining
upload: contents/vecst.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/vecst.mod
Completed 743.2 KiB/850.1 KiB (2.2 MiB/s) with 4 file(s) remaining
Completed 843.6 KiB/850.1 KiB (2.4 MiB/s) with 4 file(s) remaining
upload: contents/xpp.dat to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/xpp.dat
Completed 843.6 KiB/850.1 KiB (2.4 MiB/s) with 3 file(s) remaining
Completed 848.3 KiB/850.1 KiB (2.4 MiB/s) with 3 file(s) remaining
upload: contents/geneval_cvode.inc to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/geneval_cvode.inc
Completed 848.3 KiB/850.1 KiB (2.4 MiB/s) with 2 file(s) remaining
Completed 849.5 KiB/850.1 KiB (2.3 MiB/s) with 2 file(s) remaining
upload: contents/kcRT03.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/kcRT03.mod
Completed 849.5 KiB/850.1 KiB (2.3 MiB/s) with 1 file(s) remaining
Completed 850.1 KiB/850.1 KiB (2.2 MiB/s) with 1 file(s) remaining
upload: contents/cal.mod to s3://files.biosimulations.org/simulations/621d4295b50991044c79acc0/contents/cal.mod

[0;36m=================================================== Saving results ==================================================[0m
creating group /booth_bose.sedml
creating dataset /booth_bose.sedml/report, shape: (11, 1001), type: float64
dataset created, uuid: d-ebfee6c2-abf6225a-963b-e011ec-c59ddc, chunk_size: (11, 1001)
creating attribute combineArchiveLocation in /booth_bose.sedml
creating attribute uri in /booth_bose.sedml
creating attribute _type in /booth_bose.sedml/report
creating attribute sedmlDataSetDataTypes in /booth_bose.sedml/report
creating attribute sedmlDataSetIds in /booth_bose.sedml/report
creating attribute sedmlDataSetLabels in /booth_bose.sedml/report
creating attribute sedmlDataSetNames in /booth_bose.sedml/report
creating attribute sedmlDataSetShapes in /booth_bose.sedml/report
creating attribute sedmlId in /booth_bose.sedml/report
creating attribute sedmlName in /booth_bose.sedml/report
creating attribute uri in /booth_bose.sedml/report
create_links: /
got link: booth_bose.sedml
create_links: /booth_bose.sedml
got link: report
write_dataset src: /booth_bose.sedml/report to tgt: /booth_bose.sedml/report, shape: (11, 1001), type: float64
iterating over chunks for /booth_bose.sedml/report
writing dataset data for slice: (slice(0, 11, 1), slice(0, 1001, 1))
done with dataload for /booth_bose.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/621d4295b50991044c79acc0

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
