[0;36mThank you for using runBioSimulations![0m

[0;36m================================================ Loading Singularity ================================================[0m

[0;36m============================================ Downloading COMBINE archive ============================================[0m
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   139  100   139    0     0    463      0 --:--:-- --:--:-- --:--:--   463

100 55449  100 55449    0     0   131k      0 --:--:-- --:--:-- --:--:--  131k

[0;36m============================================= Executing COMBINE archive =============================================[0m
INFO:    Using cached SIF image
Traceback (most recent call last):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 247, in <module>
    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 213, in update_paths
    update_scripts(scripts_dir, new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 125, in update_scripts
    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)
  File "/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py", line 118, in update_script
    with open(script_filename, 'w') as f:
OSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'
Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:
  simulation.sedml:
    Tasks (1):
      task
    Reports (1):
      report: 4 data sets
    Plots (1):
      plot: 3 curves

Executing SED-ML file 1: simulation.sedml ...

Bundling outputs ...
Cleaning up ...

============= SUMMARY =============
Executed 1 SED documents:
  SED documents (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Tasks (1):
    Succeeded: 1
    Skipped: 0
    Failed: 0
  Outputs (2):
    Succeeded: 2
    Skipped: 0
    Failed: 0


[0;36m=================================================== Saving results ==================================================[0m
creating group /simulation.sedml
creating dataset /simulation.sedml/plot, shape: (4, 1001), type: float64
dataset created, uuid: d-afa78625-6ccfdceb-031f-3c9f76-a54e6b, chunk_size: (4, 1001)
creating dataset /simulation.sedml/report, shape: (4, 1001), type: float64
dataset created, uuid: d-afa78625-6ccfdceb-204c-dbb4cf-eaa14f, chunk_size: (4, 1001)
creating attribute combineArchiveLocation in /simulation.sedml
creating attribute uri in /simulation.sedml
creating attribute _type in /simulation.sedml/plot
creating attribute sedmlDataSetDataTypes in /simulation.sedml/plot
creating attribute sedmlDataSetIds in /simulation.sedml/plot
creating attribute sedmlDataSetLabels in /simulation.sedml/plot
creating attribute sedmlDataSetNames in /simulation.sedml/plot
creating attribute sedmlDataSetShapes in /simulation.sedml/plot
creating attribute sedmlId in /simulation.sedml/plot
creating attribute uri in /simulation.sedml/plot
creating attribute _type in /simulation.sedml/report
creating attribute sedmlDataSetDataTypes in /simulation.sedml/report
creating attribute sedmlDataSetIds in /simulation.sedml/report
creating attribute sedmlDataSetLabels in /simulation.sedml/report
creating attribute sedmlDataSetNames in /simulation.sedml/report
creating attribute sedmlDataSetShapes in /simulation.sedml/report
creating attribute sedmlId in /simulation.sedml/report
creating attribute uri in /simulation.sedml/report
create_links: /
got link: simulation.sedml
create_links: /simulation.sedml
got link: plot
got link: report
write_dataset src: /simulation.sedml/plot to tgt: /simulation.sedml/plot, shape: (4, 1001), type: float64
iterating over chunks for /simulation.sedml/plot
writing dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))
done with dataload for /simulation.sedml/plot
write_dataset src: /simulation.sedml/report to tgt: /simulation.sedml/report, shape: (4, 1001), type: float64
iterating over chunks for /simulation.sedml/report
writing dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))
done with dataload for /simulation.sedml/report
load_file complete
File outputs/reports.h5 uploaded to domain: /results/61fea492f499ccf25faafc5f

[0;36m================================================== Zipping outputs ==================================================[0m
  adding: outputs/ (stored 0%)
