{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    454      0 --:--:-- --:--:-- --:--:--   454\r100   139  100   139    0     0    446      0 --:--:-- --:--:-- --:--:--   446\n\r100 13790  100 13790    0     0  32923      0 --:--:-- --:--:-- --:--:-- 32923\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\ndocker: Command recieved::<-i /root/archive.omex -o /root/outputs>\n<-i>\nDefault case selected\nVCell shall execute <biosimulations -i /root/archive.omex -o /root/outputs>\nWARN StatusConsoleListener The use of package scanning to locate plugins is deprecated and will be removed in a future release\nWARN StatusConsoleListener The use of package scanning to locate plugins is deprecated and will be removed in a future release\nWARN StatusConsoleListener The use of package scanning to locate plugins is deprecated and will be removed in a future release\nWARN StatusConsoleListener The use of package scanning to locate plugins is deprecated and will be removed in a future release\n INFO (CLIStandalone:36) - Starting Vcell... []{}\n INFO (BiosimulationsCommand:94) - Beginning execution []{}\n INFO (CLIPythonManager:125) - Initializing Python... []{}\n INFO (CLIPythonManager:150) - Python initialization success! []{}\n INFO (ExecuteImpl:134) - Preparing output directory... []{}\n INFO (ExecutionJob:83) - Executing OMEX archive `archive.omex` []{}\n INFO (ExecutionJob:84) - Archive location: /root/archive.omex []{}\n-----------------------------------------------------------------------------------------------------\n INFO (RunUtils:476) - TempPath Created: /tmp/vcell_temp_53ff889e-f84c-44c5-a8aa-cafcab82da635606275959352073661 []{}\n INFO (RunUtils:476) - TempPath Created: /tmp/vcell_temp_536059d4-20f0-4712-925f-674dd36126e6765516892232995580 []{}\n INFO (SedmlJob:110) - Initializing SED-ML document... []{}\nSED-ML version level not supported, import may fail\nSED-ML version level not supported, import may fail\n INFO (SedmlJob:125) - Processing SED-ML: Theinmozhi_2018.sedml []{}\n INFO (SedmlJob:161) - Found one SED-ML document with 1 model(s), 1 simulation(s), 2 task(s), 1  report(s),  5 plot2D(s), and 0 plot3D(s)\n []{}\n INFO (SedmlJob:166) - Successful translation of SED-ML file : Theinmozhi_2018.sedml []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SedmlJob:170) - Creating pseudo SED-ML for HDF5 conversion... []{}\n INFO (SedmlJob:186) - Creating Biomodel from pseudo SED-ML []{}\nSED-ML version level not supported, import may fail\nSED-ML version level not supported, import may fail\n INFO (SedmlJob:261) - Building solvers and starting simulation of all tasks...  []{}\nSED-ML version level not supported, import may fail\nSED-ML version level not supported, import may fail\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@5df778c3(id=null, name='SLP76t', species='SLP76t', structure='Cell', sbmlName='SLP76t')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@3c5dbdf8(id=null, name='ZAP70t', species='ZAP70t', structure='Cell', sbmlName='ZAP70t')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@2849434b(id=null, name='CD28t', species='CD28t', structure='Cell', sbmlName='CD28t')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@767a014e(id=null, name='LCKactive', species='LCKactive', structure='Cell', sbmlName='LCKactive')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@a66e580(id=null, name='LATt', species='LATt', structure='Cell', sbmlName='LATt')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@6edcad64(id=null, name='LCKinactive', species='LCKinactive', structure='Cell', sbmlName='LCKinactive')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@43e9089(id=null, name='PI3Kt', species='PI3Kt', structure='Cell', sbmlName='PI3Kt')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@895416d(id=null, name='CD3t', species='CD3t', structure='Cell', sbmlName='CD3t')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@4eba373c(id=null, name='LCKt', species='LCKt', structure='Cell', sbmlName='LCKt')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@2f5ac102(id=null, name='GADSt', species='GADSt', structure='Cell', sbmlName='GADSt')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\nERROR (SBMLImporter:1362) - unexpected assignment rule target 'SpeciesContext@70228253(id=null, name='CPactive', species='CPactive', structure='Cell', sbmlName='CPactive')', adding as assignment rule - minimal support provided []{}\nERROR (SBMLImporter:1363) - need to create a VCLogger event []{}\n INFO (SimulationContext:3289) - mathMapping: message = transforming the Rate Rules... []{}\nERROR (SEDMLImporter:187) - Task (id='task1)' is not compatible, no equivalent solver found in ontology for requested algorithm 'KISAO:0000694'; trying with deterministic default solver CombinedSundials []{}\nERROR (SEDMLImporter:1074) - Algorithm parameter with kisao id 'KISAO:0000571' not supported at this time, skipping. []{}\nERROR (SEDMLImporter:1074) - Algorithm parameter with kisao id 'KISAO:0000216' not supported at this time, skipping. []{}\nERROR (SEDMLImporter:1074) - Algorithm parameter with kisao id 'KISAO:0000415' not supported at this time, skipping. []{}\ntaskToSimulationMap: 1\ntaskToListOfSubTasksMap: 1\ntaskToVariableMap: 1\ntopTaskToBaseTask: 1\n INFO (SolverHandler:430) - Solver: cbit.vcell.solvers.CombinedSundialsSolver@46de118b []{}\n INFO (SolverHandler:431) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:477) - Succesful execution: Model 'archive_Theinmozhi_2018.sedml_model' Task 'task1'. []{}\n INFO (SolverHandler:489) - Running simulation task1_task1, 303 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:613) - Ran 1 simulation jobs for 1 biomodels. []{}\n INFO (SedmlJob:302) - Generating outputs...  []{}\n INFO (SedmlJob:357) - Generating CSV file...  []{}\n INFO (RunUtils:196) - Ignoring unsupported output `plot_6_task2` while CSV generation. []{}\n INFO (RunUtils:196) - Ignoring unsupported output `plot_7_task2` while CSV generation. []{}\n INFO (RunUtils:196) - Ignoring unsupported output `plot_8_task2` while CSV generation. []{}\n INFO (RunUtils:196) - Ignoring unsupported output `plot_9_task2` while CSV generation. []{}\n INFO (RunUtils:196) - Ignoring unsupported output `plot_10_task2` while CSV generation. []{}\n INFO (RunUtils:202) - Generating report `autogen_report_for_task2`. []{}\n INFO (RunUtils:381) - created csv file for report autogen_report_for_task2: /tmp/VCell_CLI_19465a20a2f4944547871699319142/Theinmozhi_2018.sedml/autogen_report_for_task2.csv []{}\n INFO (RunUtils:202) - Generating report `__plot__plot_6_task2`. []{}\n INFO (RunUtils:381) - created csv file for report __plot__plot_6_task2: /tmp/VCell_CLI_19465a20a2f4944547871699319142/Theinmozhi_2018.sedml/__plot__plot_6_task2.csv []{}\n INFO (RunUtils:202) - Generating report `__plot__plot_7_task2`. []{}\n INFO (RunUtils:381) - created csv file for report __plot__plot_7_task2: /tmp/VCell_CLI_19465a20a2f4944547871699319142/Theinmozhi_2018.sedml/__plot__plot_7_task2.csv []{}\n INFO (RunUtils:202) - Generating report `__plot__plot_8_task2`. []{}\n INFO (RunUtils:381) - created csv file for report __plot__plot_8_task2: /tmp/VCell_CLI_19465a20a2f4944547871699319142/Theinmozhi_2018.sedml/__plot__plot_8_task2.csv []{}\n INFO (RunUtils:202) - Generating report `__plot__plot_9_task2`. []{}\n INFO (RunUtils:381) - created csv file for report __plot__plot_9_task2: /tmp/VCell_CLI_19465a20a2f4944547871699319142/Theinmozhi_2018.sedml/__plot__plot_9_task2.csv []{}\n INFO (RunUtils:202) - Generating report `__plot__plot_10_task2`. []{}\n INFO (RunUtils:381) - created csv file for report __plot__plot_10_task2: /tmp/VCell_CLI_19465a20a2f4944547871699319142/Theinmozhi_2018.sedml/__plot__plot_10_task2.csv []{}\n INFO (SedmlJob:380) - Generating Plots...  []{}\n INFO (SedmlJob:391) - Generating HDF5 file...  []{}\n INFO (NonspatialResultsConverter:204) - Ignoring unsupported output `plot_6_task2` while CSV generation. []{}\n INFO (NonspatialResultsConverter:204) - Ignoring unsupported output `plot_7_task2` while CSV generation. []{}\n INFO (NonspatialResultsConverter:204) - Ignoring unsupported output `plot_8_task2` while CSV generation. []{}\n INFO (NonspatialResultsConverter:204) - Ignoring unsupported output `plot_9_task2` while CSV generation. []{}\n INFO (NonspatialResultsConverter:204) - Ignoring unsupported output `plot_10_task2` while CSV generation. []{}\n INFO (SedmlJob:343) - Archiving result files []{}\n INFO (RunUtils:450) - Archiving resultant PDF files to `plots.zip`. []{}\n INFO (RunUtils:450) - Archiving resultant CSV files to `reports.zip`. []{}\n INFO (SedmlJob:350) - SED-ML : Theinmozhi_2018.sedml successfully completed []{}\n INFO (ExecutionJob:144) - Processing of SedML succeeded.\n\t> 1 model\n\t> 1 simulation\n\t> 2 tasks\n\t> 6 outputs\n\t\t>> 1 report\n\t\t>> 5 2D plots\n\t\t>> 0 3D plots\n\t> Does not have Math Overrides\n\t> Does not have Parameter Scans []{}\n INFO (BiosimulationsHdf5Writer:39) - Creating hdf5 file `reports.h5` in/tmp/VCell_CLI_19465a20a2f4944547871699319142 []{}\n WARN (WritableHdfFile:50) - Writing files is in alpha. Check files carefully! []{}\n INFO (BiosimulationsHdf5Writer:122) - HDF5 file successfully written to. []{}\n INFO (ExecutionJob:174) - Omex archive.omex processing completed (14s) []{}\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 11.4 KiB/11.4 KiB (141.6 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/rawLog.txt\n\n\u001b[0;36m===================================================== Saving Structured log ==========================================\u001b[0m\nCompleted 8.7 KiB/8.7 KiB (104.7 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 88%)\n  adding: outputs/reports.zip (stored 0%)\n  adding: outputs/log.json (deflated 95%)\n  adding: outputs/Theinmozhi_2018.sedml/ (stored 0%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_9_task2.pdf (deflated 32%)\n  adding: outputs/Theinmozhi_2018.sedml/autogen_report_for_task2.csv (deflated 64%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_10_task2.csv (deflated 51%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_10_task2.pdf (deflated 32%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_6_task2.pdf (deflated 32%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_8_task2.csv (deflated 57%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_7_task2.csv (deflated 54%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_8_task2.pdf (deflated 30%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_6_task2.csv (deflated 53%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_7_task2.pdf (deflated 31%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_9_task2.csv (deflated 50%)\n  adding: outputs/reports.h5 (deflated 55%)\n  adding: rawLog.txt (deflated 79%)\n\n\u001b[0;36m=================================================== Saving HDF5 outputs ==================================================\u001b[0m\nCompleted 117.0 KiB/117.0 KiB (1.1 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/reports.h5\n\n\u001b[0;36m=================================================== Saving non-HDF5 outputs ==================================================\u001b[0m\nCompleted 2.6 KiB/623.4 KiB (21.4 KiB/s) with 16 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_10_task2.csv to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_10_task2.csv\nCompleted 2.6 KiB/623.4 KiB (21.4 KiB/s) with 15 file(s) remaining\rCompleted 239.7 KiB/623.4 KiB (1.9 MiB/s) with 15 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/output.zip\nCompleted 239.7 KiB/623.4 KiB (1.9 MiB/s) with 14 file(s) remaining\rCompleted 406.1 KiB/623.4 KiB (2.8 MiB/s) with 14 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/autogen_report_for_task2.csv to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/autogen_report_for_task2.csv\nCompleted 406.1 KiB/623.4 KiB (2.8 MiB/s) with 13 file(s) remaining\rCompleted 415.5 KiB/623.4 KiB (2.8 MiB/s) with 13 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_10_task2.pdf to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_10_task2.pdf\nCompleted 415.5 KiB/623.4 KiB (2.8 MiB/s) with 12 file(s) remaining\rCompleted 456.8 KiB/623.4 KiB (2.8 MiB/s) with 12 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/plots.zip\nCompleted 456.8 KiB/623.4 KiB (2.8 MiB/s) with 11 file(s) remaining\rCompleted 459.3 KiB/623.4 KiB (2.1 MiB/s) with 11 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_7_task2.csv to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_7_task2.csv\nCompleted 459.3 KiB/623.4 KiB (2.1 MiB/s) with 10 file(s) remaining\rCompleted 472.8 KiB/623.4 KiB (2.0 MiB/s) with 10 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/rawLog.txt\nCompleted 472.8 KiB/623.4 KiB (2.0 MiB/s) with 9 file(s) remaining\rCompleted 541.2 KiB/623.4 KiB (2.3 MiB/s) with 9 file(s) remaining\rupload: outputs/reports.zip to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/reports.zip\nCompleted 541.2 KiB/623.4 KiB (2.3 MiB/s) with 8 file(s) remaining\rCompleted 554.0 KiB/623.4 KiB (2.3 MiB/s) with 8 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_7_task2.pdf to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_7_task2.pdf\nCompleted 554.0 KiB/623.4 KiB (2.3 MiB/s) with 7 file(s) remaining\rCompleted 556.5 KiB/623.4 KiB (2.2 MiB/s) with 7 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_6_task2.csv to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_6_task2.csv\nCompleted 556.5 KiB/623.4 KiB (2.2 MiB/s) with 6 file(s) remaining\rCompleted 569.2 KiB/623.4 KiB (1.9 MiB/s) with 6 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_6_task2.pdf to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_6_task2.pdf\nCompleted 569.2 KiB/623.4 KiB (1.9 MiB/s) with 5 file(s) remaining\rCompleted 578.6 KiB/623.4 KiB (1.1 MiB/s) with 5 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_9_task2.pdf to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_9_task2.pdf\nCompleted 578.6 KiB/623.4 KiB (1.1 MiB/s) with 4 file(s) remaining\rCompleted 581.2 KiB/623.4 KiB (1.1 MiB/s) with 4 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_9_task2.csv to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_9_task2.csv\nCompleted 581.2 KiB/623.4 KiB (1.1 MiB/s) with 3 file(s) remaining\rCompleted 585.6 KiB/623.4 KiB (1.1 MiB/s) with 3 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_8_task2.csv to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_8_task2.csv\nCompleted 585.6 KiB/623.4 KiB (1.1 MiB/s) with 2 file(s) remaining\rCompleted 609.1 KiB/623.4 KiB (1.0 MiB/s) with 2 file(s) remaining\rupload: outputs/log.json to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/log.json\nCompleted 609.1 KiB/623.4 KiB (1.0 MiB/s) with 1 file(s) remaining\rCompleted 623.4 KiB/623.4 KiB (1.0 MiB/s) with 1 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_8_task2.pdf to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/outputs/Theinmozhi_2018.sedml/plot_8_task2.pdf\n\n\u001b[0;36m====================================== Unzip contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/manifest.xml   \n  inflating: contents/Theinmozhi_2018.sedml  \n  inflating: contents/Theinmozhi_2018.xml  \n\n\u001b[0;36m====================================== Save contents of COMBINE/OMEX archive ======================================\u001b[0m\nCompleted 66.3 KiB/252.4 KiB (518.7 KiB/s) with 3 file(s) remaining\rupload: contents/Theinmozhi_2018.sedml to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/contents/Theinmozhi_2018.sedml\nCompleted 66.3 KiB/252.4 KiB (518.7 KiB/s) with 2 file(s) remaining\rCompleted 66.9 KiB/252.4 KiB (142.7 KiB/s) with 2 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/contents/manifest.xml\nCompleted 66.9 KiB/252.4 KiB (142.7 KiB/s) with 1 file(s) remaining\rCompleted 252.4 KiB/252.4 KiB (509.6 KiB/s) with 1 file(s) remaining\rupload: contents/Theinmozhi_2018.xml to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/contents/Theinmozhi_2018.xml\n\n\u001b[0;36m==================================================== Updating log (2) ===============================================\u001b[0m\nCompleted 19.2 KiB/19.2 KiB (55.0 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67868fdc167dc18b5b248717/rawLog.txt\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[1;33mProcess the metadata in the COMBINE archive ... failed due to: The metadata of the file could not be found:\nThere was an error in processing the metadata file. More information is available at https://docs.biosimulations.org/concepts/conventions/simulation-project-metadata/. A validation tool is available at https://run.biosimulations.org/utils/validate-metadata.\nPost the metadata to the API ... failed due to: Metadata not found due to a dependent step failing.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":14,"sedDocuments":[{"location":"Theinmozhi_2018.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Initializing SED-ML document... done. Successful translation of SED-ML file. Building solvers and starting simulation of all tasks... Generating outputs... Generating CSV file... Done. Generating HDF5 file...","duration":null,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":null,"duration":1,"algorithm":"KISAO_0000019","simulatorDetails":null},{"id":"task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Initializing simulation job 0 ... done. Starting simulation... 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