{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    437      0 --:--:-- --:--:-- --:--:--   438\n\r100 22023  100 22023    0     0  47621      0 --:--:-- --:--:-- --:--:-- 47621\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (16.2 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/rawLog.txt\n\n\u001b[0;36m===================================================== Saving Structured log ==========================================\u001b[0m\nCompleted 12.6 KiB/12.6 KiB (37.4 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/BIOMD0000000426_url.sedml/ (stored 0%)\n  adding: outputs/BIOMD0000000426_url.sedml/autogen_plot_for_task1.pdf (deflated 28%)\n  adding: outputs/log.yml (deflated 90%)\n  adding: outputs/reports.h5 (deflated 19%)\n  adding: rawLog.txt (deflated 72%)\n\n\u001b[0;36m=================================================== Saving HDF5 outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/322.9 KiB (2.5 MiB/s) with 1 file(s) remaining\rCompleted 322.9 KiB/322.9 KiB (1.5 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/outputs/reports.h5\n\n\u001b[0;36m=================================================== Saving non-HDF5 outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/296.0 KiB (8.4 MiB/s) with 4 file(s) remaining\rCompleted 273.7 KiB/296.0 KiB (2.4 MiB/s) with 4 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/output.zip\nCompleted 273.7 KiB/296.0 KiB (2.4 MiB/s) with 3 file(s) remaining\rCompleted 276.7 KiB/296.0 KiB (2.1 MiB/s) with 3 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/rawLog.txt\nCompleted 276.7 KiB/296.0 KiB (2.1 MiB/s) with 2 file(s) remaining\rCompleted 288.0 KiB/296.0 KiB (1.9 MiB/s) with 2 file(s) remaining\rupload: outputs/BIOMD0000000426_url.sedml/autogen_plot_for_task1.pdf to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/outputs/BIOMD0000000426_url.sedml/autogen_plot_for_task1.pdf\nCompleted 288.0 KiB/296.0 KiB (1.9 MiB/s) with 1 file(s) remaining\rCompleted 296.0 KiB/296.0 KiB (1.9 MiB/s) with 1 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/outputs/plots.zip\n\n\u001b[0;36m====================================== Unzip contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/manifest.xml   \n  inflating: contents/BIOMD0000000426_url.sedml  \n  inflating: contents/BIOMD0000000426_url.xml  \n\n\u001b[0;36m====================================== Save contents of COMBINE/OMEX archive ======================================\u001b[0m\nCompleted 88.1 KiB/372.9 KiB (747.3 KiB/s) with 3 file(s) remaining\rupload: contents/BIOMD0000000426_url.sedml to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/contents/BIOMD0000000426_url.sedml\nCompleted 88.1 KiB/372.9 KiB (747.3 KiB/s) with 2 file(s) remaining\rCompleted 88.7 KiB/372.9 KiB (548.7 KiB/s) with 2 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/contents/manifest.xml\nCompleted 88.7 KiB/372.9 KiB (548.7 KiB/s) with 1 file(s) remaining\rCompleted 344.7 KiB/372.9 KiB (1.2 MiB/s) with 1 file(s) remaining \rCompleted 372.9 KiB/372.9 KiB (1.0 MiB/s) with 1 file(s) remaining \rupload: contents/BIOMD0000000426_url.xml to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/contents/BIOMD0000000426_url.xml\n\n\u001b[0;36m==================================================== Updating log (2) ===============================================\u001b[0m\nCompleted 5.3 KiB/5.3 KiB (56.5 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67531ac4c3054f763d55167e/rawLog.txt\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[1;33mProcess the metadata in the COMBINE archive ... failed due to: The metadata of the file could not be found:\nThere was an error in processing the metadata file. More information is available at https://docs.biosimulations.org/concepts/conventions/simulation-project-metadata/. A validation tool is available at https://run.biosimulations.org/utils/validate-metadata.\nPost the metadata to the API ... failed due to: Metadata not found due to a dependent step failing.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.935903,"sedDocuments":[{"location":"BIOMD0000000426_url.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n  BIOMD0000000426_url.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 151 data sets\r\n    Plots (1):\r\n      autogen_plot_for_task1: 34 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000426_url.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_plot_for_task1`\r\n      `autogen_report_for_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ...woohoo!\r\n \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_plot_for_task1` ...","duration":2.409689,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.582202,"algorithm":"KISAO_0000560","simulatorDetails":[{"key":"methodName","value":"lsoda"},{"key":"parameters","value":null}]}],"outputs":[{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.723504,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_species_1","status":"SUCCEEDED"},{"id":"autogen_task1_species_2","status":"SUCCEEDED"},{"id":"autogen_task1_species_3","status":"SUCCEEDED"},{"id":"autogen_task1_species_4","status":"SUCCEEDED"},{"id":"autogen_task1_species_5","status":"SUCCEEDED"},{"id":"autogen_task1_species_6","status":"SUCCEEDED"},{"id":"autogen_task1_species_7","status":"SUCCEEDED"},{"id":"autogen_task1_species_8","status":"SUCCEEDED"},{"id":"autogen_task1_species_9","status":"SUCCEEDED"},{"id":"autogen_task1_species_10","status":"SUCCEEDED"},{"id":"autogen_task1_species_11","status":"SUCCEEDED"},{"id":"autogen_task1_species_12","status":"SUCCEEDED"},{"id":"autogen_task1_species_13","status":"SUCCEEDED"},{"id":"autogen_task1_species_14","status":"SUCCEEDED"},{"id":"autogen_task1_species_15","status":"SUCCEEDED"},{"id":"autogen_task1_species_16","status":"SUCCEEDED"},{"id":"autogen_task1_species_17","status":"SUCCEEDED"},{"id":"autogen_task1_species_18","status":"SUCCEEDED"},{"id":"autogen_task1_species_19","status":"SUCCEEDED"},{"id":"autogen_task1_species_20","status":"SUCCEEDED"},{"id":"autogen_task1_species_21","status":"SUCCEEDED"},{"id":"autogen_task1_species_22","status":"SUCCEEDED"},{"id":"autogen_task1_species_23","status":"SUCCEEDED"},{"id":"autogen_task1_species_24","status":"SUCCEEDED"},{"id":"autogen_task1_species_25","status":"SUCCEEDED"},{"id":"autogen_task1_species_26","status":"SUCCEEDED"},{"id":"autogen_task1_species_27","status":"SUCCEEDED"},{"id":"autogen_task1_species_28","status":"SUCCEEDED"},{"id":"autogen_task1_species_29","status":"SUCCEEDED"},{"id":"autogen_task1_species_30","status":"SUCCEEDED"},{"id":"autogen_task1_species_31","status":"SUCCEEDED"},{"id":"autogen_task1_species_32","status":"SUCCEEDED"},{"id":"autogen_task1_species_33","status":"SUCCEEDED"},{"id":"autogen_task1_species_34","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_1","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_2","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_3","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_4","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_5","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_6","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_7","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_8","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_9","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_10","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_11","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_12","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_13","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_14","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_15","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_16","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_17","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_18","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_19","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_20","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_21","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_22","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_23","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_24","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_25","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_26","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_27","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_28","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_29","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_30","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_31","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_32","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_33","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_34","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_35","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_36","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_37","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_38","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_39","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_40","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_41","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_42","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_43","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_44","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_45","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_46","status":"SUCCEEDED"},{"id":"autogen_task1_parameter_47","status":"SUCCEEDED"},{"id":"autogen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