{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    467      0 --:--:-- --:--:-- --:--:--   468\n\r100 13790  100 13790    0     0  33128      0 --:--:-- --:--:-- --:--:-- 33128\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 2 tasks and 6 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 6\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (17.7 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/rawLog.txt\n\n\u001b[0;36m===================================================== Saving Structured log ==========================================\u001b[0m\nCompleted 11.0 KiB/11.0 KiB (127.3 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 86%)\n  adding: outputs/Theinmozhi_2018.sedml/ (stored 0%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_9_task2.pdf (deflated 32%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_10_task2.pdf (deflated 33%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_6_task2.pdf (deflated 32%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_8_task2.pdf (deflated 30%)\n  adding: outputs/Theinmozhi_2018.sedml/plot_7_task2.pdf (deflated 31%)\n  adding: outputs/reports.h5 (deflated 70%)\n  adding: rawLog.txt (deflated 71%)\n\n\u001b[0;36m=================================================== Saving HDF5 outputs ==================================================\u001b[0m\nCompleted 235.8 KiB/235.8 KiB (1.7 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/reports.h5\n\n\u001b[0;36m=================================================== Saving non-HDF5 outputs ==================================================\u001b[0m\nCompleted 115.3 KiB/216.0 KiB (1.2 MiB/s) with 8 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/output.zip\nCompleted 115.3 KiB/216.0 KiB (1.2 MiB/s) with 7 file(s) remaining\rCompleted 127.9 KiB/216.0 KiB (1005.0 KiB/s) with 7 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_6_task2.pdf to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/Theinmozhi_2018.sedml/plot_6_task2.pdf\nCompleted 127.9 KiB/216.0 KiB (1005.0 KiB/s) with 6 file(s) remaining\rCompleted 131.1 KiB/216.0 KiB (943.8 KiB/s) with 6 file(s) remaining \rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/rawLog.txt\nCompleted 131.1 KiB/216.0 KiB (943.8 KiB/s) with 5 file(s) remaining\rCompleted 140.4 KiB/216.0 KiB (927.4 KiB/s) with 5 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_10_task2.pdf to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/Theinmozhi_2018.sedml/plot_10_task2.pdf\nCompleted 140.4 KiB/216.0 KiB (927.4 KiB/s) with 4 file(s) remaining\rCompleted 153.1 KiB/216.0 KiB (922.9 KiB/s) with 4 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_7_task2.pdf to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/Theinmozhi_2018.sedml/plot_7_task2.pdf\nCompleted 153.1 KiB/216.0 KiB (922.9 KiB/s) with 3 file(s) remaining\rCompleted 167.7 KiB/216.0 KiB (969.8 KiB/s) with 3 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_8_task2.pdf to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/Theinmozhi_2018.sedml/plot_8_task2.pdf\nCompleted 167.7 KiB/216.0 KiB (969.8 KiB/s) with 2 file(s) remaining\rCompleted 206.7 KiB/216.0 KiB (1.0 MiB/s) with 2 file(s) remaining  \rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/plots.zip\nCompleted 206.7 KiB/216.0 KiB (1.0 MiB/s) with 1 file(s) remaining\rCompleted 216.0 KiB/216.0 KiB (942.5 KiB/s) with 1 file(s) remaining\rupload: outputs/Theinmozhi_2018.sedml/plot_9_task2.pdf to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/outputs/Theinmozhi_2018.sedml/plot_9_task2.pdf\n\n\u001b[0;36m====================================== Unzip contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/manifest.xml   \n  inflating: contents/Theinmozhi_2018.sedml  \n  inflating: contents/Theinmozhi_2018.xml  \n\n\u001b[0;36m====================================== Save contents of COMBINE/OMEX archive ======================================\u001b[0m\nCompleted 66.3 KiB/252.4 KiB (601.6 KiB/s) with 3 file(s) remaining\rupload: contents/Theinmozhi_2018.sedml to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/contents/Theinmozhi_2018.sedml\nCompleted 66.3 KiB/252.4 KiB (601.6 KiB/s) with 2 file(s) remaining\rCompleted 66.9 KiB/252.4 KiB (461.3 KiB/s) with 2 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/contents/manifest.xml\nCompleted 66.9 KiB/252.4 KiB (461.3 KiB/s) with 1 file(s) remaining\rCompleted 252.4 KiB/252.4 KiB (631.4 KiB/s) with 1 file(s) remaining\rupload: contents/Theinmozhi_2018.xml to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/contents/Theinmozhi_2018.xml\n\n\u001b[0;36m==================================================== Updating log (2) ===============================================\u001b[0m\nCompleted 6.6 KiB/6.6 KiB (21.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/674dc67110bb4455d6187681/rawLog.txt\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[1;33mProcess the metadata in the COMBINE archive ... failed due to: The metadata of the file could not be found:\nThere was an error in processing the metadata file. More information is available at https://docs.biosimulations.org/concepts/conventions/simulation-project-metadata/. A validation tool is available at https://run.biosimulations.org/utils/validate-metadata.\nPost the metadata to the API ... failed due to: Metadata not found due to a dependent step failing.\u001b[0m\n\u001b[0;31mPost the SED-ML file to the API ... failed due to: Failed to post SED-ML specs:\nThere was an error uploading the SED-ML specifications to the API.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":3.978802,"sedDocuments":[{"location":"Theinmozhi_2018.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 1 reports, and 5 plots:\r\n  Theinmozhi_2018.sedml:\r\n    Tasks (2):\r\n      task1\r\n      task2\r\n    Reports (1):\r\n      autogen_report_for_task2: 120 data sets\r\n    Plots (5):\r\n      plot_10_task2: 1 curves\r\n      plot_6_task2: 1 curves\r\n      plot_7_task2: 1 curves\r\n      plot_8_task2: 2 curves\r\n      plot_9_task2: 1 curves\r\n\r\nExecuting SED-ML file 1: Theinmozhi_2018.sedml ...\r\n  Found 2 tasks and 6 outputs:\r\n    Tasks:\r\n      `task1`\r\n      `task2`\r\n    Outputs:\r\n      `autogen_report_for_task2`\r\n      `plot_10_task2`\r\n      `plot_6_task2`\r\n      `plot_7_task2`\r\n      `plot_8_task2`\r\n      `plot_9_task2`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 6 outputs ...\r\n      Generating output 1: `plot_6_task2` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 2: `plot_7_task2` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 3: `plot_8_task2` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 4: `plot_9_task2` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 5: `plot_10_task2` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 6: `autogen_report_for_task2` ... \u001b[36mqueued\u001b[0m\r\n  Executing task 2: `task2`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 6 outputs ...\r\n      Generating output 1: `plot_6_task2` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_7_task2` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `plot_8_task2` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 4: `plot_9_task2` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 5: `plot_10_task2` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 6: `autogen_report_for_task2` ...","duration":3.347017,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.377119,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":10000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]},{"id":"task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.322538,"algorithm":null,"simulatorDetails":null}],"outputs":[{"id":"plot_6_task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.139389,"curves":[{"id":"p1_curve_1_task2","status":"SUCCEEDED"}]},{"id":"plot_7_task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.143154,"curves":[{"id":"p2_curve_1_task2","status":"SUCCEEDED"}]},{"id":"plot_8_task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.148739,"curves":[{"id":"p3_curve_1_task2","status":"SUCCEEDED"},{"id":"p3_curve_2_task2","status":"SUCCEEDED"}]},{"id":"plot_9_task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.138961,"curves":[{"id":"p4_curve_1_task2","status":"SUCCEEDED"}]},{"id":"plot_10_task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.144982,"curves":[{"id":"p5_curve_1_task2","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.213115,"dataSets":[{"id":"autogen_time_for_task2","status":"SUCCEEDED"},{"id":"autogen_task2_perc_PI3K_free","status":"SUCCEEDED"},{"id":"autogen_task2_perc_ZAP70_free","status":"SUCCEEDED"},{"id":"autogen_task2_perc_LCK_active","status":"SUCCEEDED"},{"id":"autogen_task2_perc_LCK_inactive","status":"SUCCEEDED"},{"id":"autogen_task2_SLP76a","status":"SUCCEEDED"},{"id":"autogen_task2_ZAP70a2","status":"SUCCEEDED"},{"id":"autogen_task2_LCKi","status":"SUCCEEDED"},{"id":"autogen_task2_LCKyi","status":"SUCCEEDED"},{"id":"autogen_task2_LCKya","status":"SUCCEEDED"},{"id":"autogen_task2_LCKyiya","status":"SUCCEEDED"},{"id":"autogen_task2_LCKpi","status":"SUCCEEDED"},{"id":"autogen_task2_LCKt","status":"SUCCEEDED"},{"id":"autogen_task2_LCKactive","status":"SUCCEEDED"},{"id":"autogen_task2_PD1","status":"SUCCEEDED"},{"id":"autogen_task2_PD1p1","status":"SUCCEEDED"},{"id":"autogen_task2_PD1p2","status":"SUCCEEDED"},{"id":"autogen_task2_CP1","status":"SUCCEEDED"},{"id":"autogen_task2_SHP2","status":"SUCCEEDED"},{"id":"autogen_task2_CP2","status":"SUCCEEDED"},{"id":"autogen_task2_CPactive","status":"SUCCEEDED"},{"id":"autogen_task2_CD28a","status":"SUCCEEDED"},{"id":"autogen_task2_CD28i","status":"SUCCEEDED"},{"id":"autogen_task2_PI3K","status":"SUCCEEDED"},{"id":"autogen_task2_PI3Kb","status":"SUCCEEDED"},{"id":"autogen_task2_CD28t","status":"SUCCEEDED"},{"id":"autogen_task2_CD3a","status":"SUCCEEDED"},{"id":"autogen_task2_CD3i","status":"SUCCEEDED"},{"id":"autogen_task2_ZAP70a1","status":"SUCCEEDED"},{"id":"autogen_task2_ZAP70i","status":"SUCCEEDED"},{"id":"autogen_task2_ZAP70","status":"SUCCEEDED"},{"id":"autogen_task2_PI3Kt","status":"SUCCEEDED"},{"id":"autogen_task2_ZAP70t","status":"SUCCEEDED"},{"id":"autogen_task2_LATa","status":"SUCCEEDED"},{"id":"autogen_task2_LATi","status":"SUCCEEDED"},{"id":"autogen_task2_LATt","status":"SUCCEEDED"},{"id":"autogen_task2_GADS","status":"SUCCEEDED"},{"id":"autogen_task2_SLP76","status":"SUCCEEDED"},{"id":"autogen_task2_SLP76i","status":"SUCCEEDED"},{"id":"autogen_task2_GADSt","status":"SUCCEEDED"},{"id":"autogen_task2_SLP76t","status":"SUCCEEDED"},{"id":"autogen_task2_CD3t","status":"SUCCEEDED"},{"id":"autogen_task2_GADSa","status":"SUCCEEDED"},{"id":"autogen_task2_LCKinactive","status":"SUCCEEDED"},{"id":"autogen_task2_Kdpa_yiya","status":"SUCCEEDED"},{"id":"autogen_task2_Kdpi_yi","status":"SUCCEEDED"},{"id":"autogen_task2_Kdpi_yiya","status":"SUCCEEDED"},{"id":"autogen_task2_Kdpa_ya","status":"SUCCEEDED"},{"id":"autogen_task2_Kdpa_pi","status":"SUCCEEDED"},{"id":"autogen_task2_Kpi_i","status":"SUCCEEDED"},{"id":"autogen_task2_Kpi_ya","status":"SUCCEEDED"},{"id":"autogen_task2_Kpa_i","status":"SUCCEEDED"},{"id":"autogen_task2_Kpa_yi","status":"SUCCEEDED"},{"id":"autogen_task2_k","status":"SUCCEEDED"},{"id":"autogen_task2_Kp_pd1","status":"SUCCEEDED"},{"id":"autogen_task2_KMp_pd1","status":"SUCCEEDED"},{"id":"autogen_task2_Ka_shp","status":"SUCCEEDED"},{"id":"autogen_task2_Kd1_shp","status":"SUCCEEDED"},{"id":"autogen_task2_Kd2_shp","status":"SUCCEEDED"},{"id":"autogen_task2_Kdp_cp2","status":"SUCCEEDED"},{"id":"autogen_task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