{"status":"FAILED","exception":{"type":"CombineArchiveExecutionError","message":"The COMBINE/OMEX did not execute successfully:\n\n  The SED document did not execute successfully:\n  \n    UniformTimeCourseSimulation `sim1` is not supported.\n      - Simulation sim1 of type `UniformTimeCourseSimulation` is not supported. Simulation must be an instance of one of the following:\n          - SteadyStateSimulation"},"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    474      0 --:--:-- --:--:-- --:--:--   476\n\r100  2508  100  2508    0     0   6383      0 --:--:-- --:--:-- --:--:--  6383\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n\r\nINFO: No xlwt module available, Excel spreadsheet creation disabled\r\n\r\n\r\n\r\nNo module named 'cplex'\r\n\r\n\r\n\r\nCPLEX not available\r\n\r\n*****\r\nUsing GLPK\r\n*****\r\n\r\n\r\nINFO: No xlrd module available, Excel spreadsheet reading disabled\r\n\r\nCBMPy environment\r\n******************\r\nRevision: r689\r\n\r\n\r\n***********************************************************************\r\n* Welcome to CBMPy (0.7.25) - PySCeS Constraint Based Modelling       *\r\n*                http://cbmpy.sourceforge.net                         *\r\n* Copyright(C) Brett G. Olivier 2014 - 2019                           *\r\n* Dept. of Systems Bioinformatics                                     *\r\n* Vrije Universiteit Amsterdam, Amsterdam, The Netherlands            *\r\n* CBMPy is developed as part of the BeBasic MetaToolKit Project       *\r\n* Distributed under the GNU GPL v 3.0 licence, see                    *\r\n* LICENCE (supplied with this release) for details                    *\r\n***********************************************************************\r\n\r\n \u001b[36mqueued\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 0\n      Skipped: 0\n      Failed: 1\n    Outputs:\n      Succeeded: 0\n      Skipped: 2\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 0\n    Skipped: 0\n    Failed: 1\n  Tasks (1):\n    Succeeded: 0\n    Skipped: 0\n    Failed: 1\n  Outputs (2):\n    Succeeded: 0\n    Skipped: 2\n    Failed: 0\n\n\u001b[31mThe COMBINE/OMEX did not execute successfully:\n\n  The SED document did not execute successfully:\n  \n    UniformTimeCourseSimulation `sim1` is not supported.\n      - Simulation sim1 of type `UniformTimeCourseSimulation` is not supported. Simulation must be an instance of one of the following:\n          - SteadyStateSimulation\u001b[0m\nsrun: error: xanadu-70: task 0: Exited with exit code 1\nsrun: Terminating job step 8544334.1\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 3.0 KiB/3.0 KiB (36.4 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/rawLog.txt\n\n\u001b[0;36m===================================================== Saving Structured log ==========================================\u001b[0m\nCompleted 3.6 KiB/3.6 KiB (29.7 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/tmp260183/ (stored 0%)\n  adding: outputs/tmp260183/d1.pdf (deflated 39%)\n  adding: outputs/log.yml (deflated 66%)\n  adding: outputs/reports.h5 (deflated 96%)\n  adding: rawLog.txt (deflated 66%)\n\n\u001b[0;36m=================================================== Saving HDF5 outputs ==================================================\u001b[0m\nCompleted 22.8 KiB/22.8 KiB (226.3 KiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/outputs/reports.h5\n\n\u001b[0;36m=================================================== Saving non-HDF5 outputs ==================================================\u001b[0m\nCompleted 5.8 KiB/21.4 KiB (52.5 KiB/s) with 4 file(s) remaining\rupload: outputs/tmp260183/d1.pdf to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/outputs/tmp260183/d1.pdf\nCompleted 5.8 KiB/21.4 KiB (52.5 KiB/s) with 3 file(s) remaining\rCompleted 13.8 KiB/21.4 KiB (107.6 KiB/s) with 3 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/output.zip\nCompleted 13.8 KiB/21.4 KiB (107.6 KiB/s) with 2 file(s) remaining\rCompleted 17.2 KiB/21.4 KiB (130.5 KiB/s) with 2 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/outputs/plots.zip\nCompleted 17.2 KiB/21.4 KiB (130.5 KiB/s) with 1 file(s) remaining\rCompleted 21.4 KiB/21.4 KiB (139.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/rawLog.txt\n\n\u001b[0;36m====================================== Unzip contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/manifest.xml   \n  inflating: contents/tmp260183      \n  inflating: contents/LEMS_NML2_Ex9_FN.sbml  \n\n\u001b[0;36m====================================== Save contents of COMBINE/OMEX archive ======================================\u001b[0m\nCompleted 642 Bytes/8.5 KiB (6.4 KiB/s) with 3 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/contents/manifest.xml\nCompleted 642 Bytes/8.5 KiB (6.4 KiB/s) with 2 file(s) remaining\rCompleted 4.2 KiB/8.5 KiB (39.5 KiB/s) with 2 file(s) remaining \rupload: contents/LEMS_NML2_Ex9_FN.sbml to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/contents/LEMS_NML2_Ex9_FN.sbml\nCompleted 4.2 KiB/8.5 KiB (39.5 KiB/s) with 1 file(s) remaining\rCompleted 8.5 KiB/8.5 KiB (64.7 KiB/s) with 1 file(s) remaining\rupload: contents/tmp260183 to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/contents/tmp260183\n\n\u001b[0;36m==================================================== Updating log (2) ===============================================\u001b[0m\nCompleted 6.3 KiB/6.3 KiB (54.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/67224aa12e0c0591a7c89863/rawLog.txt\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[1;33mProcess the metadata in the COMBINE archive ... failed due to: The metadata of the file could not be found:\nThere was an error in processing the metadata file. More information is available at https://docs.biosimulations.org/concepts/conventions/simulation-project-metadata/. A validation tool is available at https://run.biosimulations.org/utils/validate-metadata.\nPost the metadata to the API ... failed due to: Metadata not found due to a dependent step failing.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":0.673538,"sedDocuments":[{"location":"tmp260183","status":"FAILED","exception":{"type":"SedmlExecutionError","message":"The SED document did not execute successfully:\n\n  UniformTimeCourseSimulation `sim1` is not supported.\n    - Simulation sim1 of type `UniformTimeCourseSimulation` is not supported. Simulation must be an instance of one of the following:\n        - SteadyStateSimulation"},"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n  tmp260183:\r\n    Tasks (1):\r\n      sim1_net1\r\n    Reports (1):\r\n      ex9: 3 data sets\r\n    Plots (1):\r\n      d1: 2 curves\r\n\r\nExecuting SED-ML file 1: tmp260183 ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `sim1_net1`\r\n    Outputs:\r\n      `d1`\r\n      `ex9`\r\n  Executing task 1: `sim1_net1`\r\n    Executing simulation ... \u001b[31mfailed\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `d1` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 2: `ex9` ...","duration":0.322908,"tasks":[{"id":"sim1_net1","status":"FAILED","exception":{"type":"ValueError","message":"UniformTimeCourseSimulation `sim1` is not supported.\n  - Simulation sim1 of type `UniformTimeCourseSimulation` is not supported. Simulation must be an instance of one of the following:\n      - SteadyStateSimulation"},"skipReason":null,"output":"","duration":0.027703,"algorithm":null,"simulatorDetails":null}],"outputs":[{"id":"d1","status":"SKIPPED","exception":null,"skipReason":null,"output":"","duration":0.159044,"curves":[{"id":"curve_V","status":"SKIPPED"},{"id":"curve_W","status":"SKIPPED"}]},{"id":"ex9","status":"SKIPPED","exception":null,"skipReason":null,"output":"","duration":0.057168,"dataSets":[{"id":"ex9_time","status":"SKIPPED"},{"id":"ex9_V","status":"SKIPPED"},{"id":"ex9_W","status":"SKIPPED"}]}]}]}