{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n % Total % Received % Xferd Average Speed Time Time Time Current\n Dload Upload Total Spent Left Speed\n\r 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0\r100 139 100 139 0 0 447 0 --:--:-- --:--:-- --:--:-- 448\n\r100 71892 100 71892 0 0 163k 0 --:--:-- --:--:-- --:--:-- 163k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO: Converting OCI blobs to SIF format\nINFO: Starting build...\nGetting image source signatures\nCopying blob sha256:f0412dfb1aaea4892c13dab6f771bcd79641a4bdcb521ce881f5dcfc0df9a7a5\nCopying blob sha256:6e6c21f79a94cfcd8a94e9e627c4385196c175b1cda36e94f4984747ced55f78\nCopying blob sha256:f0bae54791394c7f1817bf659851be1f675460111e0381e3a9d41c84b4225518\nCopying blob sha256:6faf297c56dce5b78b744c0994a1371433c6ceb74b89918496cff5f4b5881c98\nCopying blob sha256:1bd3d33db5e82b6597b2e047d376488d0bc41490a130554db5712f7e78cce45c\nCopying blob sha256:6dc2498a14a7e0dcbe9e569c65f9ad9b786f0bc02d4464abc330ed09e48ec684\nCopying blob sha256:d0e2a868cb8ba1d1d9cf162bd095846575ce1cf53a471790ed1a89c72b52bace\nCopying blob sha256:fea6c5fbde7cc146aa2f598c4eac348a345b4df0ced0602b2887d8f6a0bfd753\nCopying blob sha256:0ba2d52ed6e86d173d376a8a16fe63c2e187b05621177bf3dbfdedfb0e8a78c9\nCopying blob sha256:b564a9d365bf80c7f72aa6ba1d72b687fe26032d74ee1926e725478ababcd3b8\nCopying blob sha256:352b453ff556e3ba71738a4d57f5b0598c2f75f92136684277c32556f80efd80\nCopying blob sha256:c9ae35d55cf936b1964aa55acc43e7a1e3d0eaf0090743329bf17b0bbd18760f\nCopying blob sha256:2d8cda8691ec3dd7d2e337adc3b357f96a56f4e46fa9f85e4b1d2c6221ca2c26\nCopying blob sha256:fab8f8e270e7cfa86fd57a039a62a10f2272407a8c5d3b12896298948e2077c0\nCopying blob sha256:bf4401851d8235e5ac282a63bb20e099488b67418da5d14b3c43f52b1891d398\nCopying blob sha256:9c5792f43d390307635480ab09a1dcc8dda1c747f7616bbcd66e96e55763f472\nCopying blob sha256:88d42a5db43f99001ad3117ee1e6f73ca1882425fce6df43b49a73b223ec7eac\nCopying config sha256:fda60e08fc9b9e71a8f9930085a78ebfb2a0416e985384e836c531d66d38ce70\nWriting manifest to image destination\nStoring signatures\n2023/06/27 22:29:06 info unpack layer: sha256:f0412dfb1aaea4892c13dab6f771bcd79641a4bdcb521ce881f5dcfc0df9a7a5\n2023/06/27 22:29:06 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:29:06 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/bin} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:29:23 info unpack layer: sha256:6e6c21f79a94cfcd8a94e9e627c4385196c175b1cda36e94f4984747ced55f78\n2023/06/27 22:29:23 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:29:23 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/var} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:29:24 info unpack layer: sha256:f0bae54791394c7f1817bf659851be1f675460111e0381e3a9d41c84b4225518\n2023/06/27 22:29:24 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:29:24 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/etc} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:30:50 info unpack layer: sha256:6faf297c56dce5b78b744c0994a1371433c6ceb74b89918496cff5f4b5881c98\n2023/06/27 22:30:50 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:30:50 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/etc} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:31:46 info unpack layer: sha256:1bd3d33db5e82b6597b2e047d376488d0bc41490a130554db5712f7e78cce45c\n2023/06/27 22:31:46 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:31:46 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/etc} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:31:46 info unpack layer: sha256:6dc2498a14a7e0dcbe9e569c65f9ad9b786f0bc02d4464abc330ed09e48ec684\n2023/06/27 22:31:46 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:31:46 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:31:46 info unpack layer: sha256:d0e2a868cb8ba1d1d9cf162bd095846575ce1cf53a471790ed1a89c72b52bace\n2023/06/27 22:31:46 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:31:46 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/root} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:33:20 info unpack layer: sha256:fea6c5fbde7cc146aa2f598c4eac348a345b4df0ced0602b2887d8f6a0bfd753\n2023/06/27 22:33:20 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:33:20 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/root} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:34:02 info unpack layer: sha256:0ba2d52ed6e86d173d376a8a16fe63c2e187b05621177bf3dbfdedfb0e8a78c9\n2023/06/27 22:34:02 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:34:02 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:34:09 info unpack layer: sha256:b564a9d365bf80c7f72aa6ba1d72b687fe26032d74ee1926e725478ababcd3b8\n2023/06/27 22:34:09 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:34:09 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:34:09 info unpack layer: sha256:352b453ff556e3ba71738a4d57f5b0598c2f75f92136684277c32556f80efd80\n2023/06/27 22:34:09 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:34:09 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/poetry} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:36:21 info unpack layer: sha256:c9ae35d55cf936b1964aa55acc43e7a1e3d0eaf0090743329bf17b0bbd18760f\n2023/06/27 22:36:21 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:36:21 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:36:23 info unpack layer: sha256:2d8cda8691ec3dd7d2e337adc3b357f96a56f4e46fa9f85e4b1d2c6221ca2c26\n2023/06/27 22:36:23 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:36:23 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:36:24 info unpack layer: sha256:fab8f8e270e7cfa86fd57a039a62a10f2272407a8c5d3b12896298948e2077c0\n2023/06/27 22:36:24 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:36:24 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:36:24 info unpack layer: sha256:bf4401851d8235e5ac282a63bb20e099488b67418da5d14b3c43f52b1891d398\n2023/06/27 22:36:24 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:36:24 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:36:25 info unpack layer: sha256:9c5792f43d390307635480ab09a1dcc8dda1c747f7616bbcd66e96e55763f472\n2023/06/27 22:36:25 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:36:25 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\n2023/06/27 22:36:25 info unpack layer: sha256:88d42a5db43f99001ad3117ee1e6f73ca1882425fce6df43b49a73b223ec7eac\n2023/06/27 22:36:25 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs} ignoring ENOTSUP on llistxattr\n2023/06/27 22:36:25 warn xattr{/scratch/singularity/build-temp-3962972669/rootfs/usr} destination filesystem does not support xattrs, further warnings will be suppressed\nINFO: Creating SIF file...\ndocker: Command recieved::<-i /root/archive.omex -o /root/outputs>\n<-i>\nDefault case selected\nVCell shall execute \n INFO (CLIStandalone:38) - Starting Vcell... []{}\n INFO (PropertyLoader:577) - Can't read propertyFile /usr/lib/jvm/java-8-openjdk-amd64/jre/vcell.properties specified by java home directory []{}\n INFO (PropertyLoader:583) - ServerID=7.3.0.16, SoftwareVersion=7.5.0.45 []{}\n INFO (BiosimulationsCommand:98) - Beginning execution []{}\n INFO (CLIPythonManager:116) - Initializing Python... []{}\n INFO (CLIPythonManager:136) - Python initialization success! []{}\n INFO (ExecuteImpl:119) - Preparing output directory... []{}\nERROR (RunUtils:507) - java.lang.Exception: File '/root/outputs' could not be deleted! []{}\n INFO (ExecutionJob:86) - Executing OMEX archive /root/archive.omex []{}\n-----------------------------------------------------------------------------------------------------\n INFO (NativeLib:29) - Loading combinej []{}\n INFO (RunUtils:475) - TempPath Created: /tmp/vcell_temp_176f71e2-2470-4666-b3ef-51b963c9c5115875421453557577860 []{}\n INFO (SedmlJob:107) - Initializing SED-ML document... []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n INFO (SedmlJob:120) - Processing SED-ML: VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml []{}\n INFO (SedmlJob:156) - Found one SED-ML document with 13 model(s), 12 simulation(s), 12 task(s), 12 report(s), 12 plot2D(s), and 0 plot3D(s)\n []{}\n INFO (SedmlJob:161) - Successful translation of SED-ML file : VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SedmlJob:165) - Creating pseudo SED-ML for HDF5 conversion... []{}\n INFO (SedmlJob:177) - Creating Biomodel from pseudo SED-ML []{}\n INFO (SedmlJob:238) - Building solvers and starting simulation of all tasks... []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SEDMLReader:249) - Unexpected [Element: ] []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_0') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_1') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_2') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_3') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_4') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_5') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_6') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_7') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_8') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_9') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_10') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_11') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\ntaskToSimulationMap: 12\ntaskToListOfSubTasksMap: 12\ntaskToVariableMap: 12\ntopTaskToBaseTask: 12\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@7f5538a1 []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'Sept and McCammon 1 uM'. []{}\n INFO (SolverHandler:481) - Running simulation Sept and McCammon 1 uM, 463 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@2e645fbd []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'Sept and McCammon 2.5 uM'. []{}\n INFO (SolverHandler:481) - Running simulation Sept and McCammon 2.5 uM, 200 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@1e1e9ef3 []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'Sept and McCammon 10 uM'. []{}\n INFO (SolverHandler:481) - Running simulation Sept and McCammon 10 uM, 176 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@31c628e7 []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'This paper 1 uM'. []{}\n INFO (SolverHandler:481) - Running simulation This paper 1 uM, 300 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@58434b19 []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'This paper 2.5 uM'. []{}\n INFO (SolverHandler:481) - Running simulation This paper 2.5 uM, 160 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@7dbe2ebf []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task 'This paper 10 uM'. []{}\n INFO (SolverHandler:481) - Running simulation This paper 10 uM, 160 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@885e7ff []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '7.5% pyrenyl-actin'. []{}\n INFO (SolverHandler:481) - Running simulation 7.5% pyrenyl-actin, 171 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@4fa9ab6 []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '15% pyrenyl-actin'. []{}\n INFO (SolverHandler:481) - Running simulation 15% pyrenyl-actin, 161 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@a2341c6 []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '25% pyrenyl-actin'. []{}\n INFO (SolverHandler:481) - Running simulation 25% pyrenyl-actin, 147 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@3e3315d9 []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '50% pyrenyl-actin'. []{}\n INFO (SolverHandler:481) - Running simulation 50% pyrenyl-actin, 182 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@74e6094b []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '75% pyrenyl-actin'. []{}\n INFO (SolverHandler:481) - Running simulation 75% pyrenyl-actin, 154 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@5cf3157b []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml_Simulations_of_Sept_and_McCammon_and_this_paper' Task '100% pyrenyl-actin'. []{}\n INFO (SolverHandler:481) - Running simulation 100% pyrenyl-actin, 157 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:594) - Ran 12 simulation jobs for 1 biomodels. []{}\n INFO (SedmlJob:273) - Generating outputs... []{}\n INFO (SedmlJob:327) - Generating CSV file... []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d_Sept_and_McCammon_1_uM` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d_Sept_and_McCammon_2_5_uM` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d_Sept_and_McCammon_10_uM` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d_This_paper_1_uM` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d_This_paper_2_5_uM` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d_This_paper_10_uM` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d__7_5__pyrenyl_actin` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d__15__pyrenyl_actin` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d__25__pyrenyl_actin` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d__50__pyrenyl_actin` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d__75__pyrenyl_actin` while CSV generation. []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d__100__pyrenyl_actin` while CSV generation. []{}\n INFO (RunUtils:200) - Generating report `report_Sept_and_McCammon_1_uM`. []{}\n INFO (RunUtils:380) - created csv file for report report_Sept_and_McCammon_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_1_uM.csv []{}\n INFO (RunUtils:200) - Generating report `report_Sept_and_McCammon_2_5_uM`. []{}\n INFO (RunUtils:380) - created csv file for report report_Sept_and_McCammon_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_2_5_uM.csv []{}\n INFO (RunUtils:200) - Generating report `report_Sept_and_McCammon_10_uM`. []{}\n INFO (RunUtils:380) - created csv file for report report_Sept_and_McCammon_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_10_uM.csv []{}\n INFO (RunUtils:200) - Generating report `report_This_paper_1_uM`. []{}\n INFO (RunUtils:380) - created csv file for report report_This_paper_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_1_uM.csv []{}\n INFO (RunUtils:200) - Generating report `report_This_paper_2_5_uM`. []{}\n INFO (RunUtils:380) - created csv file for report report_This_paper_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM.csv []{}\n INFO (RunUtils:200) - Generating report `report_This_paper_10_uM`. []{}\n INFO (RunUtils:380) - created csv file for report report_This_paper_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_10_uM.csv []{}\n INFO (RunUtils:200) - Generating report `report__7_5__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report report__7_5__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `report__15__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report report__15__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `report__25__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report report__25__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `report__50__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report report__50__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `report__75__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report report__75__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `report__100__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report report__100__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d_Sept_and_McCammon_1_uM`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d_Sept_and_McCammon_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_Sept_and_McCammon_1_uM.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d_Sept_and_McCammon_2_5_uM`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d_Sept_and_McCammon_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_Sept_and_McCammon_2_5_uM.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d_Sept_and_McCammon_10_uM`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d_Sept_and_McCammon_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_Sept_and_McCammon_10_uM.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d_This_paper_1_uM`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d_This_paper_1_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_This_paper_1_uM.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d_This_paper_2_5_uM`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d_This_paper_2_5_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_This_paper_2_5_uM.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d_This_paper_10_uM`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d_This_paper_10_uM: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d_This_paper_10_uM.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d__7_5__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d__7_5__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__7_5__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d__15__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d__15__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__15__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d__25__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d__25__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__25__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d__50__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d__50__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__50__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d__75__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d__75__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__75__pyrenyl_actin.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d__100__pyrenyl_actin`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d__100__pyrenyl_actin: /root/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/__plot__plot2d__100__pyrenyl_actin.csv []{}\n INFO (SedmlJob:349) - Generating Plots... []{}\n WARN (CLIPythonManager:78) - Using old style python invocation! []{}\n WARN (CLIPythonManager:250) - Temp out file didn't delete properly []{}\n WARN (CLIPythonManager:251) - Temp error file didn't delete properly []{}\n INFO (SedmlJob:361) - Generating HDF5 file... []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_Sept_and_McCammon_1_uM` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_Sept_and_McCammon_2_5_uM` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_Sept_and_McCammon_10_uM` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_This_paper_1_uM` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_This_paper_2_5_uM` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_This_paper_10_uM` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__7_5__pyrenyl_actin` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__15__pyrenyl_actin` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__25__pyrenyl_actin` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__50__pyrenyl_actin` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__75__pyrenyl_actin` while CSV generation. []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d__100__pyrenyl_actin` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_Sept_and_McCammon_1_uM` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_Sept_and_McCammon_2_5_uM` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_Sept_and_McCammon_10_uM` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_This_paper_1_uM` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_This_paper_2_5_uM` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_This_paper_10_uM` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__7_5__pyrenyl_actin` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__15__pyrenyl_actin` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__25__pyrenyl_actin` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__50__pyrenyl_actin` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__75__pyrenyl_actin` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d__100__pyrenyl_actin` while CSV generation. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_1 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_2 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_3 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_4 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_5 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_6 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_7 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_8 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_9 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_10 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_11 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n INFO (SedmlJob:313) - Archiving result files []{}\n INFO (RunUtils:449) - Archiving resultant PDF files to `plots.zip`. []{}\n INFO (RunUtils:449) - Archiving resultant CSV files to `reports.zip`. []{}\n INFO (SedmlJob:320) - SED-ML : VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml successfully completed []{}\n INFO (ExecutionJob:143) - Processing of SedML succeeded.\norg.vcell.cli.run.SedmlStatistics@53c6f96d []{}\n INFO (NativeLib:29) - Loading jhdf5 []{}\n INFO (Hdf5Writer:42) - Creating hdf5 file `reports.h5` in/root/outputs []{}\n INFO (Hdf5Writer:108) - HDF5 file successfully written to. []{}\n INFO (ExecutionJob:172) - Omex archive.omex processing completed (61s) []{}\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 59.4 KiB/59.4 KiB (475.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/rawLog.txt\nCompleted 23.2 KiB/23.2 KiB (162.5 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n adding: outputs/ (stored 0%)\n adding: outputs/log.yml (deflated 93%)\n adding: outputs/reports.zip (stored 0%)\n adding: outputs/log.json (deflated 96%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/ (stored 0%)\n adding: 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(deflated 63%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__15__pyrenyl_actin.csv (deflated 62%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_10_uM.pdf (deflated 28%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__100__pyrenyl_actin.pdf (deflated 29%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM.csv (deflated 60%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM.csv (deflated 61%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM.csv (deflated 62%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__15__pyrenyl_actin.pdf (deflated 29%)\n adding: 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outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__50__pyrenyl_actin.pdf (deflated 28%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_10_uM.csv (deflated 63%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM.pdf (deflated 29%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM.pdf (deflated 28%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_2_5_uM.csv (deflated 60%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__25__pyrenyl_actin.pdf (deflated 29%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin.csv (deflated 63%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM.pdf (deflated 28%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM.csv (deflated 62%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM.pdf (deflated 28%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin.pdf (deflated 29%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM.csv (deflated 62%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin.csv (deflated 61%)\n adding: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM.pdf (deflated 29%)\n adding: outputs/reports.h5 (deflated 25%)\n adding: rawLog.txt\n\tzip warning: file size changed 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remaining\rCompleted 13.2 MiB/13.7 MiB (17.8 MiB/s) with 8 file(s) remaining\rCompleted 13.3 MiB/13.7 MiB (17.5 MiB/s) with 8 file(s) remaining\rCompleted 13.4 MiB/13.7 MiB (17.5 MiB/s) with 8 file(s) remaining\rupload: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin.csv to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin.csv\nCompleted 13.4 MiB/13.7 MiB (17.5 MiB/s) with 7 file(s) remaining\rCompleted 13.5 MiB/13.7 MiB (17.6 MiB/s) with 7 file(s) remaining\rupload: outputs/log.json to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/outputs/log.json\nCompleted 13.5 MiB/13.7 MiB (17.6 MiB/s) with 6 file(s) remaining\rupload: outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin.csv to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/outputs/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin.csv\nCompleted 13.5 MiB/13.7 MiB (17.6 MiB/s) with 5 file(s) remaining\rCompleted 13.5 MiB/13.7 MiB (17.5 MiB/s) with 5 file(s) remaining\rCompleted 13.6 MiB/13.7 MiB (17.6 MiB/s) with 5 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/outputs/plots.zip\nCompleted 13.6 MiB/13.7 MiB (17.6 MiB/s) with 4 file(s) remaining\rupload: ./stdOut.txt to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/stdOut.txt\nCompleted 13.6 MiB/13.7 MiB (17.6 MiB/s) with 3 file(s) remaining\rCompleted 13.6 MiB/13.7 MiB (17.5 MiB/s) with 3 file(s) remaining\rCompleted 13.7 MiB/13.7 MiB (17.5 MiB/s) with 3 file(s) remaining\rupload: ./temp16879381248469308861804289383.tmp to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/temp16879381248469308861804289383.tmp\nCompleted 13.7 MiB/13.7 MiB (17.5 MiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/rawLog.txt\nCompleted 13.7 MiB/13.7 MiB (17.5 MiB/s) with 1 file(s) remaining\rCompleted 13.7 MiB/13.7 MiB (16.1 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.zip to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/outputs/reports.zip\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive: archive.omex\n inflating: contents/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml \n inflating: contents/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744_Simulations_of_Sept_and_McCammon_and_this_paper.xml \n inflating: contents/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.vcml \n inflating: contents/diagram.png \n inflating: contents/metadata.rdf \n inflating: contents/manifest.xml \nCompleted 34.5 KiB/222.1 KiB (244.4 KiB/s) with 6 file(s) remaining\rupload: contents/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.vcml to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/contents/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.vcml\nCompleted 34.5 KiB/222.1 KiB (244.4 KiB/s) with 5 file(s) remaining\rCompleted 39.5 KiB/222.1 KiB (221.8 KiB/s) with 5 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/contents/metadata.rdf\nCompleted 39.5 KiB/222.1 KiB (221.8 KiB/s) with 4 file(s) remaining\rCompleted 97.5 KiB/222.1 KiB (526.5 KiB/s) with 4 file(s) remaining\rupload: contents/diagram.png to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/contents/diagram.png\nCompleted 97.5 KiB/222.1 KiB (526.5 KiB/s) with 3 file(s) 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s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/contents/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 87.1 KiB/87.1 KiB (646.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/649b9ae87f806acb848541ec/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml\ncreating dataset /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM, shape: (8, 1001), type: float64\ndataset created, uuid: d-a629f8de-f60d854e-0433-18ccd3-f21649, chunk_size: (8, 1001)\ncreating dataset 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/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute sedmlDataSetIds in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute sedmlDataSetLabels in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM\ncreating attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM\ncreating attribute sedmlDataSetIds in 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sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute sedmlDataSetIds in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute sedmlDataSetLabels in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\ncreating attribute _type in 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attribute sedmlDataSetLabels in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\ncreating attribute sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__7_5__pyrenyl_actin\ncreating attribute scanParameterNames in 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attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin\ncreating attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin\ncreating attribute sedmlDataSetIds in 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attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\ncreating attribute sedmlDataSetIds in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\ncreating attribute sedmlDataSetLabels in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\ncreating attribute sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\ncreating attribute sedmlName in 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/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute sedmlDataSetIds in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute sedmlDataSetLabels in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute sedmlDataSetIds in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute sedmlDataSetLabels in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\ncreating attribute _type in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute scanParameterNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute sedmlDataSetDataTypes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute sedmlDataSetIds in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute sedmlDataSetLabels in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute sedmlDataSetNames in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute sedmlDataSetShapes in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute sedmlId in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute sedmlName in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreating attribute uri in /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\ncreate_links: /\ngot link: VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml\ncreate_links: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml\ngot link: plot2d_Sept_and_McCammon_10_uM\ngot link: plot2d_Sept_and_McCammon_1_uM\ngot link: plot2d_Sept_and_McCammon_2_5_uM\ngot link: plot2d_This_paper_10_uM\ngot link: plot2d_This_paper_1_uM\ngot link: plot2d_This_paper_2_5_uM\ngot link: plot2d__100__pyrenyl_actin\ngot link: plot2d__15__pyrenyl_actin\ngot link: plot2d__25__pyrenyl_actin\ngot link: plot2d__50__pyrenyl_actin\ngot link: plot2d__75__pyrenyl_actin\ngot link: plot2d__7_5__pyrenyl_actin\ngot link: report_Sept_and_McCammon_10_uM\ngot link: report_Sept_and_McCammon_1_uM\ngot link: report_Sept_and_McCammon_2_5_uM\ngot link: report_This_paper_10_uM\ngot link: report_This_paper_1_uM\ngot link: report_This_paper_2_5_uM\ngot link: report__100__pyrenyl_actin\ngot link: report__15__pyrenyl_actin\ngot link: report__25__pyrenyl_actin\ngot link: report__50__pyrenyl_actin\ngot link: report__75__pyrenyl_actin\ngot link: report__7_5__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM, shape: (8, 1001), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 1001, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_10_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM, shape: (8, 5001), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 5001, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_1_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_Sept_and_McCammon_2_5_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_10_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_10_uM, shape: (8, 1001), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_10_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 1001, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_10_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM, shape: (8, 5001), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 5001, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_1_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d_This_paper_2_5_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__100__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__100__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__100__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__100__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__15__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__15__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__15__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__15__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__25__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__25__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__25__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__25__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__50__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__50__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__50__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__50__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__75__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__7_5__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__7_5__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__7_5__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/plot2d__7_5__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_10_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_10_uM, shape: (8, 1001), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_10_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 1001, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_10_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_1_uM to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_1_uM, shape: (8, 5001), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_Sept_and_McCammon_1_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 5001, 1))\ndone with dataload for 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/VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report_This_paper_2_5_uM\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__100__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__15__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__25__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__50__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__75__pyrenyl_actin\nwrite_dataset src: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin to tgt: /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin, shape: (8, 746), type: float64\niterating over chunks for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\nwriting dataset data for slice: (slice(0, 8, 1), slice(0, 746, 1))\ndone with dataload for /VCDB_217669650_Rosenbloom_BiophysJ_20211336731597647559744.sedml/report__7_5__pyrenyl_actin\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/649b9ae87f806acb848541ec\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. 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