{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    435      0 --:--:-- --:--:-- --:--:--   435\r100   139  100   139    0     0    435      0 --:--:-- --:--:-- --:--:--   434\n\r100 31995  100 31995    0     0  75579      0 --:--:-- --:--:-- --:--:-- 75579\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\ndocker: Command recieved::<-i /root/archive.omex -o /root/outputs>\n<-i>\nDefault case selected\nVCell shall execute <biosimulations -i /root/archive.omex -o /root/outputs>\n INFO (CLIStandalone:38) - Starting Vcell... []{}\n INFO (PropertyLoader:578) - Can't read propertyFile /usr/lib/jvm/java-8-openjdk-amd64/jre/vcell.properties specified by java home directory []{}\n INFO (PropertyLoader:584) - ServerID=7.3.0.16, SoftwareVersion=7.5.0.37 []{}\n INFO (BiosimulationsCommand:98) - Beginning execution []{}\n INFO (CLIPythonManager:116) - Initializing Python... []{}\n INFO (CLIPythonManager:136) - Python initialization success! []{}\n INFO (ExecuteImpl:100) - Preparing output directory... []{}\nERROR (RunUtils:507) - java.lang.Exception: File '/root/outputs' could not be deleted! []{}\n INFO (ExecutionJob:86) - Executing OMEX archive /root/archive.omex []{}\n-----------------------------------------------------------------------------------------------------\n INFO (NativeLib:29) - Loading combinej []{}\n INFO (RunUtils:475) - TempPath Created: /tmp/vcell_temp_b0434aba-16bc-4e49-99a4-f652729a90214866505820293258681 []{}\n INFO (SedmlJob:104) - Initializing SED-ML document... []{}\n WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}\n INFO (SedmlJob:117) - Processing SED-ML: VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml []{}\n INFO (SedmlJob:153) - Found one SED-ML document with 1 model(s), 1 simulation(s), 1 task(s), 1  report(s),  1 plot2D(s), and 0 plot3D(s)\n []{}\n INFO (SedmlJob:158) - Successful translation of SED-ML file : VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SedmlJob:162) - Creating pseudo SED-ML for HDF5 conversion... []{}\n INFO (SedmlJob:174) - Creating Biomodel from pseudo SED-ML []{}\n INFO (SedmlJob:235) - Building solvers and starting simulation of all tasks...  []{}\n WARN (SEDMLReader:249) - Unexpected [Element: <notes [Namespace: http://sed-ml.org/sed-ml/level1/version2]/>] []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n WARN (SolverUtilities:168) - KISAO - bad format, skipping []{}\n INFO (SEDMLImporter:182) - Task (id='tsk_0_0') is compatible, solver match found in ontology: 'KISAO:0000019' matched to CVODE []{}\ntaskToSimulationMap: 1\ntaskToListOfSubTasksMap: 1\ntaskToVariableMap: 1\ntopTaskToBaseTask: 1\n INFO (SolverHandler:422) - Solver: cbit.vcell.solver.ode.CVodeSolverStandalone@73d4066e []{}\n INFO (SolverHandler:423) - Status: Finished: SOLVER_FINISHED:completed []{}\n INFO (SolverHandler:469) - Succesful execution: Model 'archive_VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml_Application0' Task 'Pin1-FLw/p131_first titration point'. []{}\n INFO (SolverHandler:481) - Running simulation Pin1-FLw/p131_first titration point, 364 ms []{}\n-----------------------------------------------------------------------------------------------------\n INFO (SolverHandler:594) - Ran 1 simulation jobs for 1 biomodels. []{}\n INFO (SedmlJob:268) - Generating outputs...  []{}\n INFO (SedmlJob:322) - Generating CSV file...  []{}\n INFO (RunUtils:194) - Ignoring unsupported output `plot2d_Pin1_FLw_p131_first_titration_point` while CSV generation. []{}\n INFO (RunUtils:200) - Generating report `report_Pin1_FLw_p131_first_titration_point`. []{}\n INFO (RunUtils:380) - created csv file for report report_Pin1_FLw_p131_first_titration_point: /root/outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point.csv []{}\n INFO (RunUtils:200) - Generating report `__plot__plot2d_Pin1_FLw_p131_first_titration_point`. []{}\n INFO (RunUtils:380) - created csv file for report __plot__plot2d_Pin1_FLw_p131_first_titration_point: /root/outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/__plot__plot2d_Pin1_FLw_p131_first_titration_point.csv []{}\n INFO (SedmlJob:344) - Generating Plots...  []{}\n WARN (CLIPythonManager:78) - Using old style python invocation! []{}\n WARN (CLIPythonManager:250) - Temp out file didn't delete properly []{}\n WARN (CLIPythonManager:251) - Temp error file didn't delete properly []{}\n INFO (SedmlJob:356) - Generating HDF5 file...  []{}\n INFO (NonspatialResultsConverter:202) - Ignoring unsupported output `plot2d_Pin1_FLw_p131_first_titration_point` while CSV generation. []{}\n INFO (SpatialResultsConverter:155) - Ignoring unsupported output `plot2d_Pin1_FLw_p131_first_titration_point` while CSV generation. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:53) - Was not able to find simulation data for task with ID: tsk_0_0 []{}\n WARN (SpatialResultsConverter:115) - We encountered non-compatible (or non-existent) data. This may mean a problem has been encountered. []{}\n INFO (SedmlJob:308) - Archiving result files []{}\n INFO (RunUtils:449) - Archiving resultant PDF files to `plots.zip`. []{}\n INFO (RunUtils:449) - Archiving resultant CSV files to `reports.zip`. []{}\n INFO (SedmlJob:315) - SED-ML : VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml successfully completed []{}\n INFO (ExecutionJob:142) - Processing of SedML succeeded.\norg.vcell.cli.run.SedmlStatistics@1e0895f5 []{}\n INFO (NativeLib:29) - Loading jhdf5 []{}\n INFO (Hdf5Writer:42) - Creating hdf5 file `reports.h5` in/root/outputs []{}\n INFO (Hdf5Writer:108) - HDF5 file successfully written to. []{}\n INFO (ExecutionJob:171) - Omex archive.omex processing completed (10s) []{}\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 7.9 KiB/7.9 KiB (63.9 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/rawLog.txt\nCompleted 2.2 KiB/2.2 KiB (18.2 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 78%)\n  adding: outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/ (stored 0%)\n  adding: outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point.csv (deflated 97%)\n  adding: outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point.csv (deflated 97%)\n  adding: outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point.pdf (deflated 32%)\n  adding: outputs/reports.zip (stored 0%)\n  adding: outputs/log.json (deflated 86%)\n  adding: outputs/reports.h5 (deflated 92%)\n  adding: rawLog.txt (deflated 74%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 100.6 KiB/100.6 KiB (747.4 KiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/reports.h5\nCompleted 36.9 KiB/285.9 KiB (238.5 KiB/s) with 10 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/output.zip\nCompleted 36.9 KiB/285.9 KiB (238.5 KiB/s) with 9 file(s) remaining\rCompleted 46.4 KiB/285.9 KiB (263.1 KiB/s) with 9 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/plots.zip\nCompleted 46.4 KiB/285.9 KiB (263.1 KiB/s) with 8 file(s) remaining\rCompleted 53.7 KiB/285.9 KiB (294.5 KiB/s) with 8 file(s) remaining\rupload: outputs/reports.zip to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/reports.zip\nCompleted 53.7 KiB/285.9 KiB (294.5 KiB/s) with 7 file(s) remaining\rCompleted 54.1 KiB/285.9 KiB (279.7 KiB/s) with 7 file(s) remaining\rupload: ./stdOut.txt to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/stdOut.txt\nCompleted 54.1 KiB/285.9 KiB (279.7 KiB/s) with 6 file(s) remaining\rCompleted 63.5 KiB/285.9 KiB (309.8 KiB/s) with 6 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/rawLog.txt\nCompleted 63.5 KiB/285.9 KiB (309.8 KiB/s) with 5 file(s) remaining\rCompleted 69.3 KiB/285.9 KiB (310.2 KiB/s) with 5 file(s) remaining\rupload: ./temp16879189758469308861804289383.tmp to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/temp16879189758469308861804289383.tmp\nCompleted 69.3 KiB/285.9 KiB (310.2 KiB/s) with 4 file(s) remaining\rCompleted 82.8 KiB/285.9 KiB (352.1 KiB/s) with 4 file(s) remaining\rCompleted 87.0 KiB/285.9 KiB (365.6 KiB/s) with 4 file(s) remaining\rupload: outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point.pdf to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point.pdf\nCompleted 87.0 KiB/285.9 KiB (365.6 KiB/s) with 3 file(s) remaining\rupload: outputs/log.json to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/log.json\nCompleted 87.0 KiB/285.9 KiB (365.6 KiB/s) with 2 file(s) remaining\rCompleted 186.3 KiB/285.9 KiB (728.2 KiB/s) with 2 file(s) remaining\rupload: outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point.csv to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point.csv\nCompleted 186.3 KiB/285.9 KiB (728.2 KiB/s) with 1 file(s) remaining\rCompleted 285.9 KiB/285.9 KiB (1.1 MiB/s) with 1 file(s) remaining  \rupload: outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point.csv to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/outputs/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point.csv\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml  \n  inflating: contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673_Application0.xml  \n  inflating: contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.vcml  \n  inflating: contents/diagram.png    \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 24.7 KiB/65.1 KiB (177.9 KiB/s) with 6 file(s) remaining\rupload: contents/diagram.png to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/contents/diagram.png\nCompleted 24.7 KiB/65.1 KiB (177.9 KiB/s) with 5 file(s) remaining\rCompleted 40.7 KiB/65.1 KiB (286.5 KiB/s) with 5 file(s) remaining\rupload: contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.vcml to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.vcml\nCompleted 40.7 KiB/65.1 KiB (286.5 KiB/s) with 4 file(s) remaining\rCompleted 41.6 KiB/65.1 KiB (249.1 KiB/s) with 4 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/contents/manifest.xml\nCompleted 41.6 KiB/65.1 KiB (249.1 KiB/s) with 3 file(s) remaining\rCompleted 47.4 KiB/65.1 KiB (267.4 KiB/s) with 3 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/contents/metadata.rdf\nCompleted 47.4 KiB/65.1 KiB (267.4 KiB/s) with 2 file(s) remaining\rCompleted 58.3 KiB/65.1 KiB (296.9 KiB/s) with 2 file(s) remaining\rupload: contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673_Application0.xml to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673_Application0.xml\nCompleted 58.3 KiB/65.1 KiB (296.9 KiB/s) with 1 file(s) remaining\rCompleted 65.1 KiB/65.1 KiB (325.8 KiB/s) with 1 file(s) remaining\rupload: contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/contents/VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 14.9 KiB/14.9 KiB (112.4 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/649b5322642531fcf940a7da/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml\ncreating dataset /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point, shape: (6, 1001), type: float64\ndataset created, uuid: d-da7491e9-90bc2300-0929-62dfcb-2ad684, chunk_size: (6, 1001)\ncreating dataset /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point, shape: (6, 1001), type: float64\ndataset created, uuid: d-da7491e9-90bc2300-c673-f0fe99-00c477, chunk_size: (6, 1001)\ncreating attribute combineArchiveLocation in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml\ncreating attribute uri in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml\ncreating attribute _type in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute scanParameterNames in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetDataTypes in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetIds in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetLabels in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetNames in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetShapes in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlId in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlName in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute uri in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\ncreating attribute _type in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute scanParameterNames in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetDataTypes in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetIds in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetLabels in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetNames in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlDataSetShapes in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlId in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute sedmlName in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreating attribute uri in /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\ncreate_links: /\ngot link: VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml\ncreate_links: /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml\ngot link: plot2d_Pin1_FLw_p131_first_titration_point\ngot link: report_Pin1_FLw_p131_first_titration_point\nwrite_dataset src: /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point to tgt: /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point, shape: (6, 1001), type: float64\niterating over chunks for /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\nwriting dataset data for slice: (slice(0, 6, 1), slice(0, 1001, 1))\ndone with dataload for /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/plot2d_Pin1_FLw_p131_first_titration_point\nwrite_dataset src: /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point to tgt: /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point, shape: (6, 1001), type: float64\niterating over chunks for /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\nwriting dataset data for slice: (slice(0, 6, 1), slice(0, 1001, 1))\ndone with dataload for /VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml/report_Pin1_FLw_p131_first_titration_point\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/649b5322642531fcf940a7da\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":10,"sedDocuments":[{"location":"VCDB_116898345_Jung_ProcNatlAcadSciUSA_2017997379761607318673.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Initializing SED-ML document... done. Successful translation of SED-ML file. Building solvers and starting simulation of all tasks... Generating outputs... Generating CSV file... Done. Generating HDF5 file...","duration":null,"tasks":[{"id":"tsk_0_0","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Initializing simulation job 0 ... done. Starting simulation... done.","duration":1,"algorithm":"KISAO_0000019","simulatorDetails":null}],"outputs":[{"id":"plot2d_Pin1_FLw_p131_first_titration_point","status":"SUCCEEDED","exception":null,"skipReason":null,"output":null,"duration":null,"curves":[{"id":"curve_plot2d_Pin1_FLw_p131_first_titration_point_dataGen_tsk_0_0_P_A","status":"SUCCEEDED"},{"id":"curve_plot2d_Pin1_FLw_p131_first_titration_point_dataGen_tsk_0_0_A","status":"SUCCEEDED"},{"id":"curve_plot2d_Pin1_FLw_p131_first_titration_point_dataGen_tsk_0_0_PAA","status":"SUCCEEDED"},{"id":"curve_plot2d_Pin1_FLw_p131_first_titration_point_dataGen_tsk_0_0_P","status":"SUCCEEDED"},{"id":"curve_plot2d_Pin1_FLw_p131_first_titration_point_dataGen_tsk_0_0_PA_","status":"SUCCEEDED"}]},{"id":"report_Pin1_FLw_p131_first_titration_point","status":"SUCCEEDED","exception":null,"skipReason":null,"output":null,"duration":null,"dataSets":[{"id":"__data_set__plot2d_Pin1_FLw_p131_first_titration_pointtime_tsk_0_0","status":"SUCCEEDED"},{"id":"__data_set__plot2d_Pin1_FLw_p131_first_titration_pointdataGen_tsk_0_0_P_A","status":"SUCCEEDED"},{"id":"__data_set__plot2d_Pin1_FLw_p131_first_titration_pointdataGen_tsk_0_0_A","status":"SUCCEEDED"},{"id":"__data_set__plot2d_Pin1_FLw_p131_first_titration_pointdataGen_tsk_0_0_PAA","status":"SUCCEEDED"},{"id":"__data_set__plot2d_Pin1_FLw_p131_first_titration_pointdataGen_tsk_0_0_P","status":"SUCCEEDED"},{"id":"__data_set__plot2d_Pin1_FLw_p131_first_titration_pointdataGen_tsk_0_0_PA_","status":"SUCCEEDED"}]}]}]}