{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    286      0 --:--:-- --:--:-- --:--:--   286\n\r100  302k  100  302k    0     0   494k      0 --:--:-- --:--:-- --:--:--  494k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 6 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 6\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (27.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/rawLog.txt\nCompleted 8.4 KiB/8.4 KiB (122.8 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 84%)\n  adding: outputs/Parmar2017_Rich_NoTracer.sedml/ (stored 0%)\n  adding: outputs/Parmar2017_Rich_NoTracer.sedml/plot_3_task1.pdf (deflated 32%)\n  adding: outputs/Parmar2017_Rich_NoTracer.sedml/plot_2_task1.pdf (deflated 33%)\n  adding: outputs/Parmar2017_Rich_NoTracer.sedml/plot_4_task1.pdf (deflated 34%)\n  adding: outputs/Parmar2017_Rich_NoTracer.sedml/plot_5_task1.pdf (deflated 33%)\n  adding: outputs/Parmar2017_Rich_NoTracer.sedml/plot_1_task1.pdf (deflated 32%)\n  adding: outputs/reports.h5 (deflated 29%)\n  adding: rawLog.txt (deflated 72%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 225.2 KiB/225.2 KiB (2.3 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/reports.h5\nCompleted 205.3 KiB/309.5 KiB (2.3 MiB/s) with 8 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/output.zip\nCompleted 205.3 KiB/309.5 KiB (2.3 MiB/s) with 7 file(s) remaining\rCompleted 215.9 KiB/309.5 KiB (1.8 MiB/s) with 7 file(s) remaining\rupload: outputs/Parmar2017_Rich_NoTracer.sedml/plot_2_task1.pdf to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/Parmar2017_Rich_NoTracer.sedml/plot_2_task1.pdf\nCompleted 215.9 KiB/309.5 KiB (1.8 MiB/s) with 6 file(s) remaining\rCompleted 225.3 KiB/309.5 KiB (1.6 MiB/s) with 6 file(s) remaining\rupload: outputs/Parmar2017_Rich_NoTracer.sedml/plot_4_task1.pdf to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/Parmar2017_Rich_NoTracer.sedml/plot_4_task1.pdf\nCompleted 225.3 KiB/309.5 KiB (1.6 MiB/s) with 5 file(s) remaining\rCompleted 237.4 KiB/309.5 KiB (1.7 MiB/s) with 5 file(s) remaining\rupload: outputs/Parmar2017_Rich_NoTracer.sedml/plot_5_task1.pdf to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/Parmar2017_Rich_NoTracer.sedml/plot_5_task1.pdf\nCompleted 237.4 KiB/309.5 KiB (1.7 MiB/s) with 4 file(s) remaining\rCompleted 249.0 KiB/309.5 KiB (1.7 MiB/s) with 4 file(s) remaining\rupload: outputs/Parmar2017_Rich_NoTracer.sedml/plot_3_task1.pdf to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/Parmar2017_Rich_NoTracer.sedml/plot_3_task1.pdf\nCompleted 249.0 KiB/309.5 KiB (1.7 MiB/s) with 3 file(s) remaining\rCompleted 266.5 KiB/309.5 KiB (1.8 MiB/s) with 3 file(s) remaining\rupload: outputs/Parmar2017_Rich_NoTracer.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/Parmar2017_Rich_NoTracer.sedml/plot_1_task1.pdf\nCompleted 266.5 KiB/309.5 KiB (1.8 MiB/s) with 2 file(s) remaining\rCompleted 269.6 KiB/309.5 KiB (1.7 MiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/rawLog.txt\nCompleted 269.6 KiB/309.5 KiB (1.7 MiB/s) with 1 file(s) remaining\rCompleted 309.5 KiB/309.5 KiB (1.7 MiB/s) with 1 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/outputs/plots.zip\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/MODEL1605030005-biopax2.owl  \n  inflating: contents/MODEL1605030005-biopax3.owl  \n  inflating: contents/MODEL1605030005.m  \n  inflating: contents/MODEL1605030005.png  \n  inflating: contents/MODEL1605030005.svg  \n  inflating: contents/MODEL1605030005_urn.xml  \n  inflating: contents/Parmar2017_Rich_NoTracer-biopax2.owl  \n  inflating: contents/Parmar2017_Rich_NoTracer-biopax3.owl  \n  inflating: contents/Parmar2017_Rich_NoTracer-matlab.m  \n  inflating: contents/Parmar2017_Rich_NoTracer-octave.m  \n  inflating: contents/Parmar2017_Rich_NoTracer.cps  \n  inflating: contents/Parmar2017_Rich_NoTracer.ode  \n  inflating: contents/Parmar2017_Rich_NoTracer.sedml  \n  inflating: contents/Parmar2017_Rich_NoTracer.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 52.0 KiB/944.0 KiB (450.2 KiB/s) with 18 file(s) remaining\rupload: contents/MODEL1605030005-biopax3.owl to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/MODEL1605030005-biopax3.owl\nCompleted 52.0 KiB/944.0 KiB (450.2 KiB/s) with 17 file(s) remaining\rCompleted 65.6 KiB/944.0 KiB (561.2 KiB/s) with 17 file(s) remaining\rupload: contents/MODEL1605030005.m to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/MODEL1605030005.m\nCompleted 65.6 KiB/944.0 KiB (561.2 KiB/s) with 16 file(s) remaining\rCompleted 96.7 KiB/944.0 KiB (713.1 KiB/s) with 16 file(s) remaining\rupload: contents/MODEL1605030005-biopax2.owl to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/MODEL1605030005-biopax2.owl\nCompleted 96.7 KiB/944.0 KiB (713.1 KiB/s) with 15 file(s) remaining\rCompleted 110.5 KiB/944.0 KiB (803.0 KiB/s) with 15 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer-matlab.m to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer-matlab.m\nCompleted 110.5 KiB/944.0 KiB (803.0 KiB/s) with 14 file(s) remaining\rCompleted 260.8 KiB/944.0 KiB (1.8 MiB/s) with 14 file(s) remaining  \rupload: contents/MODEL1605030005.png to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/MODEL1605030005.png\nCompleted 260.8 KiB/944.0 KiB (1.8 MiB/s) with 13 file(s) remaining\rCompleted 274.5 KiB/944.0 KiB (1.8 MiB/s) with 13 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer-octave.m to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer-octave.m\nCompleted 274.5 KiB/944.0 KiB (1.8 MiB/s) with 12 file(s) remaining\rCompleted 284.6 KiB/944.0 KiB (1.9 MiB/s) with 12 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer.ode to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer.ode\nCompleted 284.6 KiB/944.0 KiB (1.9 MiB/s) with 11 file(s) remaining\rCompleted 449.0 KiB/944.0 KiB (2.8 MiB/s) with 11 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer.cps to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer.cps\nCompleted 449.0 KiB/944.0 KiB (2.8 MiB/s) with 10 file(s) remaining\rCompleted 492.1 KiB/944.0 KiB (2.7 MiB/s) with 10 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer.sedml to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer.sedml\nCompleted 492.1 KiB/944.0 KiB (2.7 MiB/s) with 9 file(s) remaining\rCompleted 601.1 KiB/944.0 KiB (3.1 MiB/s) with 9 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer.xml to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer.xml\nCompleted 601.1 KiB/944.0 KiB (3.1 MiB/s) with 8 file(s) remaining\rCompleted 601.5 KiB/944.0 KiB (2.9 MiB/s) with 8 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/curation_notes.txt\nCompleted 601.5 KiB/944.0 KiB (2.9 MiB/s) with 7 file(s) remaining\rCompleted 657.3 KiB/944.0 KiB (3.1 MiB/s) with 7 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer-biopax3.owl to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer-biopax3.owl\nCompleted 657.3 KiB/944.0 KiB (3.1 MiB/s) with 6 file(s) remaining\rCompleted 755.3 KiB/944.0 KiB (3.4 MiB/s) with 6 file(s) remaining\rupload: contents/MODEL1605030005_urn.xml to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/MODEL1605030005_urn.xml\nCompleted 755.3 KiB/944.0 KiB (3.4 MiB/s) with 5 file(s) remaining\rCompleted 801.1 KiB/944.0 KiB (3.5 MiB/s) with 5 file(s) remaining\rupload: contents/MODEL1605030005.svg to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/MODEL1605030005.svg\nCompleted 801.1 KiB/944.0 KiB (3.5 MiB/s) with 4 file(s) remaining\rCompleted 904.6 KiB/944.0 KiB (3.9 MiB/s) with 4 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/curation_image.png\nCompleted 904.6 KiB/944.0 KiB (3.9 MiB/s) with 3 file(s) remaining\rCompleted 906.8 KiB/944.0 KiB (3.9 MiB/s) with 3 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/metadata.rdf\nCompleted 906.8 KiB/944.0 KiB (3.9 MiB/s) with 2 file(s) remaining\rCompleted 909.0 KiB/944.0 KiB (3.8 MiB/s) with 2 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/manifest.xml\nCompleted 909.0 KiB/944.0 KiB (3.8 MiB/s) with 1 file(s) remaining\rCompleted 944.0 KiB/944.0 KiB (3.9 MiB/s) with 1 file(s) remaining\rupload: contents/Parmar2017_Rich_NoTracer-biopax2.owl to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/contents/Parmar2017_Rich_NoTracer-biopax2.owl\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 11.3 KiB/11.3 KiB (172.7 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488f16dee26f4323c900303/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /Parmar2017_Rich_NoTracer.sedml\ncreating dataset /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1, shape: (72, 401), type: float64\ndataset created, uuid: d-9c198f63-8cee86c3-d62a-b44399-6e3538, chunk_size: (72, 401)\ncreating dataset /Parmar2017_Rich_NoTracer.sedml/plot_1_task1, shape: (21, 401), type: float64\ndataset created, uuid: d-9c198f63-8cee86c3-5233-432d42-745f16, chunk_size: (21, 401)\ncreating dataset /Parmar2017_Rich_NoTracer.sedml/plot_2_task1, shape: (2, 401), type: float64\ndataset created, uuid: d-9c198f63-8cee86c3-a465-edfc68-3ec4cc, chunk_size: (2, 401)\ncreating dataset /Parmar2017_Rich_NoTracer.sedml/plot_3_task1, shape: (2, 401), type: float64\ndataset created, uuid: d-9c198f63-8cee86c3-6130-467a1e-f5738f, chunk_size: (2, 401)\ncreating dataset /Parmar2017_Rich_NoTracer.sedml/plot_4_task1, shape: (2, 401), type: float64\ndataset created, uuid: d-9c198f63-8cee86c3-9a6d-f8832d-0c23f7, chunk_size: (2, 401)\ncreating dataset /Parmar2017_Rich_NoTracer.sedml/plot_5_task1, shape: (2, 401), type: float64\ndataset created, uuid: d-9c198f63-8cee86c3-1b38-00cb85-bec46e, chunk_size: (2, 401)\ncreating attribute combineArchiveLocation in /Parmar2017_Rich_NoTracer.sedml\ncreating attribute uri in /Parmar2017_Rich_NoTracer.sedml\ncreating attribute _type in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute uri in /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\ncreating attribute _type in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute sedmlId in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute sedmlName in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute uri in /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\ncreating attribute _type in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute sedmlDataSetDataTypes in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute sedmlDataSetIds in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute sedmlDataSetLabels in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute sedmlDataSetNames in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute sedmlDataSetShapes in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute sedmlId in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute uri in /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\ncreating attribute _type in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute sedmlDataSetDataTypes in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute sedmlDataSetIds in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute sedmlDataSetLabels in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute sedmlDataSetNames in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute sedmlDataSetShapes in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute sedmlId in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute uri in /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\ncreating attribute _type in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute sedmlDataSetDataTypes in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute sedmlDataSetIds in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute sedmlDataSetLabels in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute sedmlDataSetNames in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute sedmlDataSetShapes in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute sedmlId in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute uri in /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\ncreating attribute _type in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreating attribute sedmlDataSetDataTypes in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreating attribute sedmlDataSetIds in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreating attribute sedmlDataSetLabels in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreating attribute sedmlDataSetNames in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreating attribute sedmlDataSetShapes in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreating attribute sedmlId in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreating attribute uri in /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\ncreate_links: /\ngot link: Parmar2017_Rich_NoTracer.sedml\ncreate_links: /Parmar2017_Rich_NoTracer.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ngot link: plot_2_task1\ngot link: plot_3_task1\ngot link: plot_4_task1\ngot link: plot_5_task1\nwrite_dataset src: /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1 to tgt: /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1, shape: (72, 401), type: float64\niterating over chunks for /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 72, 1), slice(0, 401, 1))\ndone with dataload for /Parmar2017_Rich_NoTracer.sedml/autogen_report_for_task1\nwrite_dataset src: /Parmar2017_Rich_NoTracer.sedml/plot_1_task1 to tgt: /Parmar2017_Rich_NoTracer.sedml/plot_1_task1, shape: (21, 401), type: float64\niterating over chunks for /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 21, 1), slice(0, 401, 1))\ndone with dataload for /Parmar2017_Rich_NoTracer.sedml/plot_1_task1\nwrite_dataset src: /Parmar2017_Rich_NoTracer.sedml/plot_2_task1 to tgt: /Parmar2017_Rich_NoTracer.sedml/plot_2_task1, shape: (2, 401), type: float64\niterating over chunks for /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 401, 1))\ndone with dataload for /Parmar2017_Rich_NoTracer.sedml/plot_2_task1\nwrite_dataset src: /Parmar2017_Rich_NoTracer.sedml/plot_3_task1 to tgt: /Parmar2017_Rich_NoTracer.sedml/plot_3_task1, shape: (2, 401), type: float64\niterating over chunks for /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 401, 1))\ndone with dataload for /Parmar2017_Rich_NoTracer.sedml/plot_3_task1\nwrite_dataset src: /Parmar2017_Rich_NoTracer.sedml/plot_4_task1 to tgt: /Parmar2017_Rich_NoTracer.sedml/plot_4_task1, shape: (2, 401), type: float64\niterating over chunks for /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 401, 1))\ndone with dataload for /Parmar2017_Rich_NoTracer.sedml/plot_4_task1\nwrite_dataset src: /Parmar2017_Rich_NoTracer.sedml/plot_5_task1 to tgt: /Parmar2017_Rich_NoTracer.sedml/plot_5_task1, shape: (2, 401), type: float64\niterating over chunks for /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 401, 1))\ndone with dataload for /Parmar2017_Rich_NoTracer.sedml/plot_5_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6488f16dee26f4323c900303\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.483959,"sedDocuments":[{"location":"Parmar2017_Rich_NoTracer.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 5 plots:\r\n  Parmar2017_Rich_NoTracer.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 72 data sets\r\n    Plots (5):\r\n      plot_1_task1: 20 curves\r\n      plot_2_task1: 1 curves\r\n      plot_3_task1: 1 curves\r\n      plot_4_task1: 1 curves\r\n      plot_5_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: Parmar2017_Rich_NoTracer.sedml ...\r\n  Found 1 tasks and 6 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n      `plot_2_task1`\r\n      `plot_3_task1`\r\n      `plot_4_task1`\r\n      `plot_5_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 6 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_2_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `plot_3_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 4: `plot_4_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 5: `plot_5_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 6: `autogen_report_for_task1` ...","duration":1.964348,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.267845,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.464078,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"},{"id":"p1_curve_4_task1","status":"SUCCEEDED"},{"id":"p1_curve_5_task1","status":"SUCCEEDED"},{"id":"p1_curve_6_task1","status":"SUCCEEDED"},{"id":"p1_curve_7_task1","status":"SUCCEEDED"},{"id":"p1_curve_8_task1","status":"SUCCEEDED"},{"id":"p1_curve_9_task1","status":"SUCCEEDED"},{"id":"p1_curve_10_task1","status":"SUCCEEDED"},{"id":"p1_curve_11_task1","status":"SUCCEEDED"},{"id":"p1_curve_12_task1","status":"SUCCEEDED"},{"id":"p1_curve_13_task1","status":"SUCCEEDED"},{"id":"p1_curve_14_task1","status":"SUCCEEDED"},{"id":"p1_curve_15_task1","status":"SUCCEEDED"},{"id":"p1_curve_16_task1","status":"SUCCEEDED"},{"id":"p1_curve_17_task1","status":"SUCCEEDED"},{"id":"p1_curve_18_task1","status":"SUCCEEDED"},{"id":"p1_curve_19_task1","status":"SUCCEEDED"},{"id":"p1_curve_20_task1","status":"SUCCEEDED"}]},{"id":"plot_2_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.135049,"curves":[{"id":"p2_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_3_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.143317,"curves":[{"id":"p3_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_4_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.135259,"curves":[{"id":"p4_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_5_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.253536,"curves":[{"id":"p5_curve_1_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.213884,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_FeDuo","status":"SUCCEEDED"},{"id":"autogen_task1_FeRBC","status":"SUCCEEDED"},{"id":"autogen_task1_FeSpleen","status":"SUCCEEDED"},{"id":"autogen_task1_FeLiver","status":"SUCCEEDED"},{"id":"autogen_task1_Tf","status":"SUCCEEDED"},{"id":"autogen_task1_Hepcidin","status":"SUCCEEDED"},{"id":"autogen_task1_Fe2Tf","status":"SUCCEEDED"},{"id":"autogen_task1_Fe1Tf","status":"SUCCEEDED"},{"id":"autogen_task1_NTBI","status":"SUCCEEDED"},{"id":"autogen_task1_FeRest","status":"SUCCEEDED"},{"id":"autogen_task1_FeBM","status":"SUCCEEDED"},{"id":"autogen_task1_Total_Fe__particle","status":"SUCCEEDED"},{"id":"autogen_task1_Total_Fe__conc","status":"SUCCEEDED"},{"id":"autogen_task1_FePlasma__particle","status":"SUCCEEDED"},{"id":"autogen_task1_Total_Fe__g","status":"SUCCEEDED"},{"id":"autogen_task1_Total_Tf__particle","status":"SUCCEEDED"},{"id":"autogen_task1_Total_Tf__conc","status":"SUCCEEDED"},{"id":"autogen_task1_Total_Tf__mg_ml","status":"SUCCEEDED"},{"id":"autogen_task1_FePlasma_conc","status":"SUCCEEDED"},{"id":"autogen_task1_TfSaturation","status":"SUCCEEDED"},{"id":"autogen_task1_FeOutside","status":"SUCCEEDED"},{"id":"autogen_task1_kNTBI_Fe1Tf","status":"SUCCEEDED"},{"id":"autogen_task1_kInDuo","status":"SUCCEEDED"},{"id":"autogen_task1_kInLiver","status":"SUCCEEDED"},{"id":"autogen_task1_kInRBC","status":"SUCCEEDED"},{"id":"autogen_task1_kInRest","status":"SUCCEEDED"},{"id":"autogen_task1_Km","status":"SUCCEEDED"},{"id":"autogen_task1_Ki","status":"SUCCEEDED"},{"id":"autogen_task1_kFe1Tf_Fe2Tf","status":"SUCCEEDED"},{"id":"autogen_task1_VDuoNTBI","status":"SUCCEEDED"},{"id":"autogen_task1_VLiverNTBI","status":"SUCCEEDED"},{"id":"autogen_task1_VSpleenNTBI","status":"SUCCEEDED"},{"id":"autogen_task1_VRestNTBI","status":"SUCCEEDED"},{"id":"autogen_task1_kDuoLoss","status":"SUCCEEDED"},{"id":"autogen_task1_vRBCSpleen","status":"SUCCEEDED"},{"id":"autogen_task1_kRestLoss","status":"SUCCEEDED"},{"id":"autogen_task1_kInBM","status":"SUCCEEDED"},{"id":"autogen_task1_kBMSpleen","status":"SUCCEEDED"},{"id":"autogen_task1_vDiet","status":"SUCCEEDED"},{"id":"autogen_task1_quantity_to_number_factor","status":"SUCCEEDED"},{"id":"autogen_task1_Avogadro","status":"SUCCEEDED"},{"id":"autogen_task1_ModelValue_57_0","status":"SUCCEEDED"},{"id":"autogen_task1_Duodenum","status":"SUCCEEDED"},{"id":"autogen_task1_RBC","status":"SUCCEEDED"},{"id":"autogen_task1_Spleen","status":"SUCCEEDED"},{"id":"autogen_task1_Liver","status":"SUCCEEDED"},{"id":"autogen_task1_Plasma","status":"SUCCEEDED"},{"id":"autogen_task1_RestOfBody","status":"SUCCEEDED"},{"id":"autogen_task1_BoneMarrow","status":"SUCCEEDED"},{"id":"autogen_task1_Diet","status":"SUCCEEDED"},{"id":"autogen_task1_HepcidinSynthesis","status":"SUCCEEDED"},{"id":"autogen_task1_HepcidinDecay","status":"SUCCEEDED"},{"id":"autogen_task1_Duo_NTBI","status":"SUCCEEDED"},{"id":"autogen_task1_Fe2Tf_BM","status":"SUCCEEDED"},{"id":"autogen_task1_RBC_Spleen","status":"SUCCEEDED"},{"id":"autogen_task1_Spleen_NTBI","status":"SUCCEEDED"},{"id":"autogen_task1_Liver_NTBI","status":"SUCCEEDED"},{"id":"autogen_task1_NTBI_Fe1Tf","status":"SUCCEEDED"},{"id":"autogen_task1_DuoLoss","status":"SUCCEEDED"},{"id":"autogen_task1_Fe2Tf_Liver","status":"SUCCEEDED"},{"id":"autogen_task1_Fe2Tf_Rest","status":"SUCCEEDED"},{"id":"autogen_task1_RestLoss","status":"SUCCEEDED"},{"id":"autogen_task1_Fe2Tf_Duo","status":"SUCCEEDED"},{"id":"autogen_task1_Rest_NTBI","status":"SUCCEEDED"},{"id":"autogen_task1_Fe1Tf_Fe2Tf","status":"SUCCEEDED"},{"id":"autogen_task1_Fe1Tf_Liver","status":"SUCCEEDED"},{"id":"autogen_task1_Fe1Tf_BM","status":"SUCCEEDED"},{"id":"autogen_task1_Fe1Tf_Rest","status":"SUCCEEDED"},{"id":"autogen_task1_Fe1Tf_Duo","status":"SUCCEEDED"},{"id":"autogen_task1_BM_RBC","status":"SUCCEEDED"},{"id":"autogen_task1_BM_Spleen","status":"SUCCEEDED"}]}]}]}