{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n % Total % Received % Xferd Average Speed Time Time Time Current\n Dload Upload Total Spent Left Speed\n\r 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0\r100 139 100 139 0 0 441 0 --:--:-- --:--:-- --:--:-- 442\n\r100 1612k 100 1612k 0 0 3149k 0 --:--:-- --:--:-- --:--:-- 3149k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO: Using cached SIF image\nCould not find GLIMDA.\nlibtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified in the user configuration file, set \"matplotlib_backend = \" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (1.21.4) with SciPy (1.7.3)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.0.0) - Python Simulator for Cellular Systems *\r\n* http://pysces.sourceforge.net *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2022 *\r\n* Triple-J Group for Molecular Cell Physiology *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see *\r\n* LICENCE.txt (supplied with this release) for details *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046 *\r\n***********************************************************************\r\n \u001b[34msucceeded\u001b[0m\n\n Executed 1 tasks and 2 outputs:\n Tasks:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 2 SED documents:\n SED documents (2):\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Tasks (2):\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs (4):\n Succeeded: 4\n Skipped: 0\n Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 2.9 KiB/2.9 KiB (41.4 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/rawLog.txt\nCompleted 176.9 KiB/176.9 KiB (2.1 MiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n adding: outputs/ (stored 0%)\n adding: outputs/MODEL8568434338_url.sedml/ (stored 0%)\n adding: outputs/MODEL8568434338_url.sedml/autogen_plot_for_task1.pdf (deflated 29%)\n adding: outputs/log.yml (deflated 93%)\n adding: outputs/MAP.sedml/ (stored 0%)\n adding: outputs/MAP.sedml/autogen_plot_for_task1.pdf (deflated 28%)\n adding: outputs/reports.h5 (deflated 85%)\n adding: rawLog.txt (deflated 64%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/388.6 KiB (5.7 MiB/s) with 1 file(s) remaining\rCompleted 388.6 KiB/388.6 KiB (3.7 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/outputs/reports.h5\nCompleted 22.6 KiB/198.3 KiB (252.5 KiB/s) with 8 file(s) remaining\rupload: ./_pystmptmpm419e5_parsetab.py to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/_pystmptmpm419e5_parsetab.py\nCompleted 22.6 KiB/198.3 KiB (252.5 KiB/s) with 7 file(s) remaining\rCompleted 22.6 KiB/198.3 KiB (183.1 KiB/s) with 7 file(s) remaining\rupload: ./MAP.xml-sbml_conversion_errors.txt to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/MAP.xml-sbml_conversion_errors.txt\nCompleted 22.6 KiB/198.3 KiB (183.1 KiB/s) with 6 file(s) remaining\rCompleted 34.8 KiB/198.3 KiB (252.4 KiB/s) with 6 file(s) remaining\rupload: outputs/MODEL8568434338_url.sedml/autogen_plot_for_task1.pdf to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/outputs/MODEL8568434338_url.sedml/autogen_plot_for_task1.pdf\nCompleted 34.8 KiB/198.3 KiB (252.4 KiB/s) with 5 file(s) remaining\rCompleted 57.3 KiB/198.3 KiB (389.8 KiB/s) with 5 file(s) remaining\rupload: ./_pystmptmpppbnnauo_parsetab.py to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/_pystmptmpppbnnauo_parsetab.py\nCompleted 57.3 KiB/198.3 KiB (389.8 KiB/s) with 4 file(s) remaining\rCompleted 61.5 KiB/198.3 KiB (409.3 KiB/s) with 4 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/rawLog.txt\nCompleted 61.5 KiB/198.3 KiB (409.3 KiB/s) with 3 file(s) remaining\rCompleted 83.6 KiB/198.3 KiB (488.8 KiB/s) with 3 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/outputs/plots.zip\nCompleted 83.6 KiB/198.3 KiB (488.8 KiB/s) with 2 file(s) remaining\rCompleted 178.5 KiB/198.3 KiB (1.0 MiB/s) with 2 file(s) remaining \rupload: ./output.zip to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/output.zip\nCompleted 178.5 KiB/198.3 KiB (1.0 MiB/s) with 1 file(s) remaining\rCompleted 198.3 KiB/198.3 KiB (1.1 MiB/s) with 1 file(s) remaining\rupload: outputs/MAP.sedml/autogen_plot_for_task1.pdf to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/outputs/MAP.sedml/autogen_plot_for_task1.pdf\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive: archive.omex\n inflating: contents/MAP-biopax2.owl \n inflating: contents/MAP-biopax3.owl \n inflating: contents/MAP.sedml \n inflating: contents/MAP.xml \n inflating: contents/MAP_FROG.zip \n inflating: contents/MAP_MEMOTE.pdf \n inflating: contents/MODEL8568434338-biopax2.owl \n inflating: contents/MODEL8568434338-biopax3.owl \n inflating: contents/MODEL8568434338.m \n inflating: contents/MODEL8568434338.pdf \n inflating: contents/MODEL8568434338.svg \n inflating: contents/MODEL8568434338_url.sedml \n inflating: contents/MODEL8568434338_url.xml \n inflating: contents/metadata.rdf \n inflating: contents/miniFROG_MAP.xlsx \n inflating: contents/manifest.xml \nCompleted 256.0 KiB/~5.8 MiB (5.6 MiB/s) with ~13 file(s) remaining (calculating...)\rCompleted 512.0 KiB/5.8 MiB (6.1 MiB/s) with 16 file(s) remaining \rCompleted 768.0 KiB/5.8 MiB (8.4 MiB/s) with 16 file(s) remaining \rCompleted 1.0 MiB/5.8 MiB (11.2 MiB/s) with 16 file(s) remaining \rCompleted 1.2 MiB/5.8 MiB (11.9 MiB/s) with 16 file(s) remaining \rCompleted 1.5 MiB/5.8 MiB (13.4 MiB/s) with 16 file(s) remaining \rCompleted 1.8 MiB/5.8 MiB (15.6 MiB/s) with 16 file(s) remaining \rCompleted 1.9 MiB/5.8 MiB (16.1 MiB/s) with 16 file(s) remaining \rupload: contents/MAP-biopax2.owl to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MAP-biopax2.owl\nCompleted 1.9 MiB/5.8 MiB (16.1 MiB/s) with 15 file(s) remaining\rCompleted 2.2 MiB/5.8 MiB (18.1 MiB/s) with 15 file(s) remaining\rCompleted 2.4 MiB/5.8 MiB (19.3 MiB/s) with 15 file(s) remaining\rCompleted 2.7 MiB/5.8 MiB (21.2 MiB/s) with 15 file(s) remaining\rCompleted 2.7 MiB/5.8 MiB (20.6 MiB/s) with 15 file(s) remaining\rupload: contents/MODEL8568434338.m to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MODEL8568434338.m\nCompleted 2.7 MiB/5.8 MiB (20.6 MiB/s) with 14 file(s) remaining\rCompleted 2.9 MiB/5.8 MiB (22.1 MiB/s) with 14 file(s) remaining\rCompleted 2.9 MiB/5.8 MiB (21.2 MiB/s) with 14 file(s) remaining\rupload: contents/MAP.sedml to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MAP.sedml\nCompleted 2.9 MiB/5.8 MiB (21.2 MiB/s) with 13 file(s) remaining\rCompleted 2.9 MiB/5.8 MiB (19.8 MiB/s) with 13 file(s) remaining\rupload: contents/MODEL8568434338.svg to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MODEL8568434338.svg\nCompleted 2.9 MiB/5.8 MiB (19.8 MiB/s) with 12 file(s) remaining\rCompleted 2.9 MiB/5.8 MiB (19.2 MiB/s) with 12 file(s) remaining\rupload: contents/MAP.xml to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MAP.xml\nCompleted 2.9 MiB/5.8 MiB (19.2 MiB/s) with 11 file(s) remaining\rCompleted 3.2 MiB/5.8 MiB (18.8 MiB/s) with 11 file(s) remaining\rCompleted 3.4 MiB/5.8 MiB (19.6 MiB/s) with 11 file(s) remaining\rupload: contents/MODEL8568434338-biopax3.owl to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MODEL8568434338-biopax3.owl\nCompleted 3.4 MiB/5.8 MiB (19.6 MiB/s) with 10 file(s) remaining\rCompleted 3.6 MiB/5.8 MiB (20.8 MiB/s) with 10 file(s) remaining\rupload: contents/MODEL8568434338_url.sedml to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MODEL8568434338_url.sedml\nCompleted 3.6 MiB/5.8 MiB (20.8 MiB/s) with 9 file(s) remaining\rCompleted 3.8 MiB/5.8 MiB (20.6 MiB/s) with 9 file(s) remaining\rupload: contents/MODEL8568434338_url.xml to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MODEL8568434338_url.xml\nCompleted 3.8 MiB/5.8 MiB (20.6 MiB/s) with 8 file(s) remaining\rCompleted 3.8 MiB/5.8 MiB (20.3 MiB/s) with 8 file(s) remaining\rupload: contents/MODEL8568434338.pdf to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MODEL8568434338.pdf\nCompleted 3.8 MiB/5.8 MiB (20.3 MiB/s) with 7 file(s) remaining\rCompleted 4.1 MiB/5.8 MiB (20.7 MiB/s) with 7 file(s) remaining\rCompleted 4.1 MiB/5.8 MiB (19.8 MiB/s) with 7 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/metadata.rdf\nCompleted 4.1 MiB/5.8 MiB (19.8 MiB/s) with 6 file(s) remaining\rCompleted 4.1 MiB/5.8 MiB (19.6 MiB/s) with 6 file(s) remaining\rCompleted 4.3 MiB/5.8 MiB (20.7 MiB/s) with 6 file(s) remaining\rCompleted 4.6 MiB/5.8 MiB (21.8 MiB/s) with 6 file(s) remaining\rCompleted 4.8 MiB/5.8 MiB (23.0 MiB/s) with 6 file(s) remaining\rCompleted 5.1 MiB/5.8 MiB (23.9 MiB/s) with 6 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/manifest.xml\nCompleted 5.1 MiB/5.8 MiB (23.9 MiB/s) with 5 file(s) remaining\rCompleted 5.1 MiB/5.8 MiB (23.4 MiB/s) with 5 file(s) remaining\rupload: contents/MAP_FROG.zip to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MAP_FROG.zip\nCompleted 5.1 MiB/5.8 MiB (23.4 MiB/s) with 4 file(s) remaining\rCompleted 5.3 MiB/5.8 MiB (24.4 MiB/s) with 4 file(s) remaining\rCompleted 5.6 MiB/5.8 MiB (25.2 MiB/s) with 4 file(s) remaining\rCompleted 5.6 MiB/5.8 MiB (24.5 MiB/s) with 4 file(s) remaining\rupload: contents/miniFROG_MAP.xlsx to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/miniFROG_MAP.xlsx\nCompleted 5.6 MiB/5.8 MiB (24.5 MiB/s) with 3 file(s) remaining\rCompleted 5.7 MiB/5.8 MiB (22.7 MiB/s) with 3 file(s) remaining\rupload: contents/MODEL8568434338-biopax2.owl to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MODEL8568434338-biopax2.owl\nCompleted 5.7 MiB/5.8 MiB (22.7 MiB/s) with 2 file(s) remaining\rCompleted 5.8 MiB/5.8 MiB (21.1 MiB/s) with 2 file(s) remaining\rupload: contents/MAP-biopax3.owl to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MAP-biopax3.owl\nCompleted 5.8 MiB/5.8 MiB (21.1 MiB/s) with 1 file(s) remaining\rCompleted 5.8 MiB/5.8 MiB (19.4 MiB/s) with 1 file(s) remaining\rupload: contents/MAP_MEMOTE.pdf to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/contents/MAP_MEMOTE.pdf\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 12.5 KiB/12.5 KiB (119.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488bd51da4ff2037f5924b9/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /MAP.sedml\ncreating dataset /MAP.sedml/autogen_plot_for_task1, shape: (199, 1001), type: float64\ndataset created, uuid: d-f5ca0429-e1a948e2-95e3-a36d78-3d302b, chunk_size: (199, 1001)\ncreating dataset /MAP.sedml/autogen_report_for_task1, shape: (452, 1001), type: float64\ndataset created, uuid: d-f5ca0429-e1a948e2-92de-61df98-5a9e20, chunk_size: (232, 1001)\ncreating group /MODEL8568434338_url.sedml\ncreating dataset /MODEL8568434338_url.sedml/autogen_plot_for_task1, shape: (226, 1001), type: float64\ndataset created, uuid: d-f5ca0429-e1a948e2-d3ee-2f1ae6-74ecf3, chunk_size: (226, 1001)\ncreating dataset /MODEL8568434338_url.sedml/autogen_report_for_task1, shape: (446, 1001), type: float64\ndataset created, uuid: d-f5ca0429-e1a948e2-c2e1-975460-f91437, chunk_size: (224, 1001)\ncreating attribute combineArchiveLocation in /MAP.sedml\ncreating attribute uri in /MAP.sedml\ncreating attribute _type in /MAP.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetDataTypes in /MAP.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetIds in /MAP.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetLabels in /MAP.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetNames in /MAP.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetShapes in /MAP.sedml/autogen_plot_for_task1\ncreating attribute sedmlId in /MAP.sedml/autogen_plot_for_task1\ncreating attribute sedmlName in /MAP.sedml/autogen_plot_for_task1\ncreating attribute uri in /MAP.sedml/autogen_plot_for_task1\ncreating attribute _type in /MAP.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /MAP.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /MAP.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /MAP.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /MAP.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /MAP.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /MAP.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /MAP.sedml/autogen_report_for_task1\ncreating attribute uri in /MAP.sedml/autogen_report_for_task1\ncreating attribute combineArchiveLocation in /MODEL8568434338_url.sedml\ncreating attribute uri in /MODEL8568434338_url.sedml\ncreating attribute _type in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetDataTypes in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetIds in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetLabels in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetNames in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetShapes in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlId in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlName in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute uri in /MODEL8568434338_url.sedml/autogen_plot_for_task1\ncreating attribute _type in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreating attribute uri in /MODEL8568434338_url.sedml/autogen_report_for_task1\ncreate_links: /\ngot link: MAP.sedml\ngot link: MODEL8568434338_url.sedml\ncreate_links: /MAP.sedml\ngot link: autogen_plot_for_task1\ngot link: autogen_report_for_task1\ncreate_links: /MODEL8568434338_url.sedml\ngot link: autogen_plot_for_task1\ngot link: autogen_report_for_task1\nwrite_dataset src: /MAP.sedml/autogen_plot_for_task1 to tgt: /MAP.sedml/autogen_plot_for_task1, shape: (199, 1001), type: float64\niterating over chunks for /MAP.sedml/autogen_plot_for_task1\nwriting dataset data for slice: (slice(0, 199, 1), slice(0, 1001, 1))\ndone with dataload for /MAP.sedml/autogen_plot_for_task1\nwrite_dataset src: /MAP.sedml/autogen_report_for_task1 to tgt: /MAP.sedml/autogen_report_for_task1, shape: (452, 1001), type: float64\niterating over chunks for /MAP.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 232, 1), slice(0, 1001, 1))\nskipping chunk for slice: (slice(232, 452, 1), slice(0, 1001, 1))\ndone with dataload for /MAP.sedml/autogen_report_for_task1\nwrite_dataset src: /MODEL8568434338_url.sedml/autogen_plot_for_task1 to tgt: /MODEL8568434338_url.sedml/autogen_plot_for_task1, shape: (226, 1001), type: float64\niterating over chunks for /MODEL8568434338_url.sedml/autogen_plot_for_task1\nwriting dataset data for slice: (slice(0, 226, 1), slice(0, 1001, 1))\ndone with dataload for /MODEL8568434338_url.sedml/autogen_plot_for_task1\nwrite_dataset src: /MODEL8568434338_url.sedml/autogen_report_for_task1 to tgt: /MODEL8568434338_url.sedml/autogen_report_for_task1, shape: (446, 1001), type: float64\niterating over chunks for /MODEL8568434338_url.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 224, 1), slice(0, 1001, 1))\nwriting dataset data for slice: (slice(224, 446, 1), slice(0, 1001, 1))\ndone with dataload for /MODEL8568434338_url.sedml/autogen_report_for_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6488bd51da4ff2037f5924b9\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":27.95807,"sedDocuments":[{"location":"MAP.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 2 SED-ML documents with 2 models, 2 simulations, 2 tasks, 2 reports, and 2 plots:\r\n MAP.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 452 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 198 curves\r\n MODEL8568434338_url.sedml:\r\n Tasks (1):\r\n task1\r\n Reports (1):\r\n autogen_report_for_task1: 446 data sets\r\n Plots (1):\r\n autogen_plot_for_task1: 225 curves\r\n\r\nExecuting SED-ML file 1: MAP.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...\r\nParsing file: /tmp/tmpm4_1_9e5.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"FB1N1\" has been initialised but does not occur in a rate equation\r\nInfo: \"FB2N0\" has been initialised but does not occur in a rate equation\r\nInfo: \"FB3N1\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . . . . . done.\r\n \r\nCVODE time for 1001 points: 0.4184248447418213\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...","duration":15.072294,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Check SBML support is at action level 2\r\nSBML file is L3V1\r\n\r\n\r\n\r\n*********ERRORS***********\r\n\r\nWARNING: Model is encoded as SBML Level 3, PySCeS only officially supports L2V5.\r\n\r\n*********ERRORS***********\r\n\r\n\r\nPossible errors detected in SBML conversion, Model may be incomplete. Please check the error log file \"MAP.xml-sbml_conversion_errors.txt\" for details.\r\n\r\nWARNING: No rate equation for reaction J001 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J002 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J003 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J004 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J005 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J006 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J007 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J008 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J009 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J010 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J011 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J012 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J013 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J014 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J015 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J016 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J017 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J018 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J019 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J020 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J021 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J022 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J023 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J024 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J025 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J026 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J027 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J028 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J029 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J030 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J031 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J032 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J033 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J034 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J035 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J036 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J037 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J038 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J039 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J040 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J041 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J042 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J043 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J044 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J045 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J046 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J047 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J048 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J049 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J050 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J051 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J052 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J053 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J054 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J055 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J056 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J057 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J058 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J059 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J060 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J061 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J062 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J063 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J064 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J065 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J066 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J067 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J068 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J069 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J070 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J071 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J072 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J073 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J074 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J075 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J076 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J077 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J078 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J079 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J080 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J081 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J082 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J083 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J084 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J085 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J086 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J087 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J088 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J089 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J090 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J091 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J092 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J093 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J094 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J095 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J096 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J097 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J098 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J099 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J100 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J101 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J102 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J103 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J104 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J105 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J106 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J107 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J108 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J109 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J110 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J111 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J112 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J113 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J114 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J115 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J116 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J117 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J118 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J119 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J120 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J121 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J122 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J123 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J124 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J125 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J126 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J127 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J128 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J129 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J130 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J131 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J132 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J133 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J134 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J135 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J136 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J137 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J138 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J139 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J140 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J141 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J142 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J143 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J144 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J145 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J146 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J147 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J148 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J149 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J150 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J151 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J152 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J153 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J154 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J155 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J156 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J157 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J158 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J159 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J160 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J161 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J162 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J163 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J164 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J165 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J166 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J167 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J168 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J169 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J170 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J171 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J172 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J173 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J174 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J175 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J176 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J177 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J178 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J179 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J180 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J181 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J182 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J183 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J184 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J185 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J186 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J187 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J188 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J189 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J190 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J191 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J192 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J193 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J194 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J195 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J196 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J197 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J198 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J199 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J200 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J201 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J202 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J203 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J204 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J205 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J206 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J207 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J208 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J209 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J210 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J211 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J212 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J213 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J214 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J215 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J216 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J217 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J218 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction J219 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_coenzyme_A in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_apo_AcpM in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_ADP in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_acyl_carrier_protein in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_AccB in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_biotin in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_ATP in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_pyrophosphate in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_AMP in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction Sink_BCCP_biotin in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_HCO3 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_phosphate in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_H in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_acetyl_coA in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_ACP_FAS in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_CO2 in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_NADPH in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_NADP in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_H2O in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_NADH in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_NAD in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_S_adenosyl_L_methionine in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_S_adenosyl_L_homocysteine in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_alpha_mycolate in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_cis_methoxy_mycolate in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_trans_methoxy_mycolate in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_cis_keto_mycolate in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_trans_keto_mycolate in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction biomass in file: /tmp/tmpi6lzt4a4/MAP.xml\r\nWARNING: No rate equation for reaction EX_biomass in file: /tmp/tmpi6lzt4a4/MAP.xml\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpi6lzt4a4/MAP.xml\r\n*******************************************************************\r\n\r\nFast attribute ignored for reactions:\r\n['J001', 'J002', 'J003', 'J004', 'J005', 'J006', 'J007', 'J008', 'J009', 'J010', 'J011', 'J012', 'J013', 'J014', 'J015', 'J016', 'J017', 'J018', 'J019', 'J020', 'J021', 'J022', 'J023', 'J024', 'J025', 'J026', 'J027', 'J028', 'J029', 'J030', 'J031', 'J032', 'J033', 'J034', 'J035', 'J036', 'J037', 'J038', 'J039', 'J040', 'J041', 'J042', 'J043', 'J044', 'J045', 'J046', 'J047', 'J048', 'J049', 'J050', 'J051', 'J052', 'J053', 'J054', 'J055', 'J056', 'J057', 'J058', 'J059', 'J060', 'J061', 'J062', 'J063', 'J064', 'J065', 'J066', 'J067', 'J068', 'J069', 'J070', 'J071', 'J072', 'J073', 'J074', 'J075', 'J076', 'J077', 'J078', 'J079', 'J080', 'J081', 'J082', 'J083', 'J084', 'J085', 'J086', 'J087', 'J088', 'J089', 'J090', 'J091', 'J092', 'J093', 'J094', 'J095', 'J096', 'J097', 'J098', 'J099', 'J100', 'J101', 'J102', 'J103', 'J104', 'J105', 'J106', 'J107', 'J108', 'J109', 'J110', 'J111', 'J112', 'J113', 'J114', 'J115', 'J116', 'J117', 'J118', 'J119', 'J120', 'J121', 'J122', 'J123', 'J124', 'J125', 'J126', 'J127', 'J128', 'J129', 'J130', 'J131', 'J132', 'J133', 'J134', 'J135', 'J136', 'J137', 'J138', 'J139', 'J140', 'J141', 'J142', 'J143', 'J144', 'J145', 'J146', 'J147', 'J148', 'J149', 'J150', 'J151', 'J152', 'J153', 'J154', 'J155', 'J156', 'J157', 'J158', 'J159', 'J160', 'J161', 'J162', 'J163', 'J164', 'J165', 'J166', 'J167', 'J168', 'J169', 'J170', 'J171', 'J172', 'J173', 'J174', 'J175', 'J176', 'J177', 'J178', 'J179', 'J180', 'J181', 'J182', 'J183', 'J184', 'J185', 'J186', 'J187', 'J188', 'J189', 'J190', 'J191', 'J192', 'J193', 'J194', 'J195', 'J196', 'J197', 'J198', 'J199', 'J200', 'J201', 'J202', 'J203', 'J204', 'J205', 'J206', 'J207', 'J208', 'J209', 'J210', 'J211', 'J212', 'J213', 'J214', 'J215', 'J216', 'J217', 'J218', 'J219', 'EX_coenzyme_A', 'EX_apo_AcpM', 'EX_ADP', 'EX_acyl_carrier_protein', 'EX_AccB', 'EX_biotin', 'EX_ATP', 'EX_pyrophosphate', 'EX_AMP', 'Sink_BCCP_biotin', 'EX_HCO3', 'EX_phosphate', 'EX_H', 'EX_acetyl_coA', 'EX_ACP_FAS', 'EX_CO2', 'EX_NADPH', 'EX_NADP', 'EX_H2O', 'EX_NADH', 'EX_NAD', 'EX_S_adenosyl_L_methionine', 'EX_S_adenosyl_L_homocysteine', 'EX_alpha_mycolate', 'EX_cis_methoxy_mycolate', 'EX_trans_methoxy_mycolate', 'EX_cis_keto_mycolate', 'EX_trans_keto_mycolate', 'biomass', 'EX_biomass'] \r\n\r\n*******************************************************************\r\n\r\n\r\nWARNING: Uninitialised parameters: ['J'] (value set to zero)\r\nInfo: single compartment model: locating \"J001\" in default compartment\r\nInfo: single compartment model: locating \"J002\" in default compartment\r\nInfo: single compartment model: locating \"J003\" in default compartment\r\nInfo: single compartment model: locating \"J004\" in default compartment\r\nInfo: single compartment model: locating \"J005\" in default compartment\r\nInfo: single compartment model: locating \"J006\" in default compartment\r\nInfo: single compartment model: locating \"J007\" in default compartment\r\nInfo: single compartment model: locating \"J008\" in default compartment\r\nInfo: single compartment model: locating \"J009\" in default compartment\r\nInfo: single compartment model: locating \"J010\" in default compartment\r\nInfo: single compartment model: locating \"J011\" in default compartment\r\nInfo: single compartment model: locating \"J012\" in default compartment\r\nInfo: single compartment model: locating \"J013\" in default compartment\r\nInfo: single compartment model: locating \"J014\" in default compartment\r\nInfo: single compartment model: locating \"J015\" in default compartment\r\nInfo: single compartment model: locating \"J016\" in default compartment\r\nInfo: single compartment model: locating \"J017\" in default compartment\r\nInfo: single compartment model: locating \"J018\" in default compartment\r\nInfo: single compartment model: locating \"J019\" in default compartment\r\nInfo: single compartment model: locating \"J020\" in default compartment\r\nInfo: single compartment model: locating \"J021\" in default compartment\r\nInfo: single compartment model: locating \"J022\" in default compartment\r\nInfo: single compartment model: locating \"J023\" in default compartment\r\nInfo: single compartment model: locating \"J024\" in default compartment\r\nInfo: single compartment model: locating \"J025\" in default compartment\r\nInfo: single compartment model: locating \"J026\" in default compartment\r\nInfo: single compartment model: locating \"J027\" in default compartment\r\nInfo: single compartment model: locating \"J028\" in default compartment\r\nInfo: single compartment model: locating \"J029\" in default compartment\r\nInfo: single compartment model: locating \"J030\" in default compartment\r\nInfo: single compartment model: locating \"J031\" in default compartment\r\nInfo: single compartment model: locating \"J032\" in default compartment\r\nInfo: single compartment model: locating \"J033\" in default compartment\r\nInfo: single compartment model: locating \"J034\" in default compartment\r\nInfo: single compartment model: locating \"J035\" in default compartment\r\nInfo: single compartment model: locating \"J036\" in default compartment\r\nInfo: single compartment model: locating \"J037\" in default compartment\r\nInfo: single compartment model: locating \"J038\" in default compartment\r\nInfo: single compartment model: locating \"J039\" in default compartment\r\nInfo: single compartment model: locating \"J040\" in default compartment\r\nInfo: single compartment model: locating \"J041\" in default compartment\r\nInfo: single compartment model: locating \"J042\" in default compartment\r\nInfo: single compartment model: locating \"J043\" in default compartment\r\nInfo: single compartment model: locating \"J044\" in default compartment\r\nInfo: single compartment model: locating \"J045\" in default compartment\r\nInfo: single compartment model: locating \"J046\" in default compartment\r\nInfo: single compartment model: locating \"J047\" in default compartment\r\nInfo: single compartment model: locating \"J048\" in default compartment\r\nInfo: single compartment model: locating \"J049\" in default compartment\r\nInfo: single compartment model: locating \"J050\" in default compartment\r\nInfo: single compartment model: locating \"J051\" in default compartment\r\nInfo: single compartment model: locating \"J052\" in default compartment\r\nInfo: single compartment model: locating \"J053\" in default compartment\r\nInfo: single compartment model: locating \"J054\" in default compartment\r\nInfo: single compartment model: locating \"J055\" in default compartment\r\nInfo: single compartment model: locating \"J056\" in default compartment\r\nInfo: single compartment model: locating \"J057\" in default compartment\r\nInfo: single compartment model: locating \"J058\" in default compartment\r\nInfo: single compartment model: locating \"J059\" in default compartment\r\nInfo: single compartment model: locating \"J060\" in default compartment\r\nInfo: single compartment model: locating \"J061\" in default compartment\r\nInfo: single compartment model: locating \"J062\" in default compartment\r\nInfo: single compartment model: locating \"J063\" in default compartment\r\nInfo: single compartment model: locating \"J064\" in default compartment\r\nInfo: single compartment model: locating \"J065\" in default compartment\r\nInfo: single compartment model: locating \"J066\" in default compartment\r\nInfo: single compartment model: locating \"J067\" in default compartment\r\nInfo: single compartment model: locating \"J068\" in default compartment\r\nInfo: single compartment model: locating \"J069\" in default compartment\r\nInfo: single compartment model: locating \"J070\" in default compartment\r\nInfo: single compartment model: locating \"J071\" in default compartment\r\nInfo: single compartment model: locating \"J072\" in default compartment\r\nInfo: single compartment model: locating \"J073\" in default compartment\r\nInfo: single compartment model: locating \"J074\" in default compartment\r\nInfo: single compartment model: locating \"J075\" in default compartment\r\nInfo: single compartment model: locating \"J076\" in default compartment\r\nInfo: single compartment model: locating \"J077\" in default compartment\r\nInfo: single compartment model: locating \"J078\" in default compartment\r\nInfo: single compartment model: locating \"J079\" in default compartment\r\nInfo: single compartment model: locating \"J080\" in default compartment\r\nInfo: single compartment model: locating \"J081\" in default compartment\r\nInfo: single compartment model: locating \"J082\" in default compartment\r\nInfo: single compartment model: locating \"J083\" in default compartment\r\nInfo: single compartment model: locating \"J084\" in default compartment\r\nInfo: single compartment model: locating \"J085\" in default compartment\r\nInfo: single compartment model: locating \"J086\" in default compartment\r\nInfo: single compartment model: locating \"J087\" in default compartment\r\nInfo: single compartment model: locating \"J088\" in default compartment\r\nInfo: single compartment model: locating \"J089\" in default compartment\r\nInfo: single compartment model: locating \"J090\" in default compartment\r\nInfo: single compartment model: locating \"J091\" in default compartment\r\nInfo: single compartment model: locating \"J092\" in default compartment\r\nInfo: single compartment model: locating \"J093\" in default compartment\r\nInfo: single compartment model: locating \"J094\" in default compartment\r\nInfo: single compartment model: locating \"J095\" in default compartment\r\nInfo: single compartment model: locating \"J096\" in default compartment\r\nInfo: single compartment model: locating \"J097\" in default compartment\r\nInfo: single compartment model: locating \"J098\" in default compartment\r\nInfo: single compartment model: locating \"J099\" in default compartment\r\nInfo: single compartment model: locating \"J100\" in default compartment\r\nInfo: single compartment model: locating \"J101\" in default compartment\r\nInfo: single compartment model: locating \"J102\" in default compartment\r\nInfo: single compartment model: locating \"J103\" in default compartment\r\nInfo: single compartment model: locating \"J104\" in default compartment\r\nInfo: single compartment model: locating \"J105\" in default compartment\r\nInfo: single compartment model: locating \"J106\" in default compartment\r\nInfo: single compartment model: locating \"J107\" in default compartment\r\nInfo: single compartment model: locating \"J108\" in default compartment\r\nInfo: single compartment model: locating \"J109\" in default compartment\r\nInfo: single compartment model: locating \"J110\" in default compartment\r\nInfo: single compartment model: locating \"J111\" in default compartment\r\nInfo: single compartment model: locating \"J112\" in default compartment\r\nInfo: single compartment model: locating \"J113\" in default compartment\r\nInfo: single compartment model: locating \"J114\" in default compartment\r\nInfo: single compartment model: locating \"J115\" in default compartment\r\nInfo: single compartment model: locating \"J116\" in default compartment\r\nInfo: single compartment model: locating \"J117\" in default compartment\r\nInfo: single compartment model: locating \"J118\" in default compartment\r\nInfo: single compartment model: locating \"J119\" in default compartment\r\nInfo: single compartment model: locating \"J120\" in default compartment\r\nInfo: single compartment model: locating \"J121\" in default compartment\r\nInfo: single compartment model: locating \"J122\" in default compartment\r\nInfo: single compartment model: locating \"J123\" in default compartment\r\nInfo: single compartment model: locating \"J124\" in default compartment\r\nInfo: single compartment model: locating \"J125\" in default compartment\r\nInfo: single compartment model: locating \"J126\" in default compartment\r\nInfo: single compartment model: locating \"J127\" in default compartment\r\nInfo: single compartment model: locating \"J128\" in default compartment\r\nInfo: single compartment model: locating \"J129\" in default compartment\r\nInfo: single compartment model: locating \"J130\" in default compartment\r\nInfo: single compartment model: locating \"J131\" in default compartment\r\nInfo: single compartment model: locating \"J132\" in default compartment\r\nInfo: single compartment model: locating \"J133\" in default compartment\r\nInfo: single compartment model: locating \"J134\" in default compartment\r\nInfo: single compartment model: locating \"J135\" in default compartment\r\nInfo: single compartment model: locating \"J136\" in default compartment\r\nInfo: single compartment model: locating \"J137\" in default compartment\r\nInfo: single compartment model: locating \"J138\" in default compartment\r\nInfo: single compartment model: locating \"J139\" in default compartment\r\nInfo: single compartment model: locating \"J140\" in default compartment\r\nInfo: single compartment model: locating \"J141\" in default compartment\r\nInfo: single compartment model: locating \"J142\" in default compartment\r\nInfo: single compartment model: locating \"J143\" in default compartment\r\nInfo: single compartment model: locating \"J144\" in default compartment\r\nInfo: single compartment model: locating \"J145\" in default compartment\r\nInfo: single compartment model: locating \"J146\" in default compartment\r\nInfo: single compartment model: locating \"J147\" in default compartment\r\nInfo: single compartment model: locating \"J148\" in default compartment\r\nInfo: single compartment model: locating \"J149\" in default compartment\r\nInfo: single compartment model: locating \"J150\" in default compartment\r\nInfo: single compartment model: locating \"J151\" in default compartment\r\nInfo: single compartment model: locating \"J152\" in default compartment\r\nInfo: single compartment model: locating \"J153\" in default compartment\r\nInfo: single compartment model: locating \"J154\" in default compartment\r\nInfo: single compartment model: locating \"J155\" in default compartment\r\nInfo: single compartment model: locating \"J156\" in default compartment\r\nInfo: single compartment model: locating \"J157\" in default compartment\r\nInfo: single compartment model: locating \"J158\" in default compartment\r\nInfo: single compartment model: locating \"J159\" in default compartment\r\nInfo: single compartment model: locating \"J160\" in default compartment\r\nInfo: single compartment model: locating \"J161\" in default compartment\r\nInfo: single compartment model: locating \"J162\" in default compartment\r\nInfo: single compartment model: locating \"J163\" in default compartment\r\nInfo: single compartment model: locating \"J164\" in default compartment\r\nInfo: single compartment model: locating \"J165\" in default compartment\r\nInfo: single compartment model: locating \"J166\" in default compartment\r\nInfo: single compartment model: locating \"J167\" in default compartment\r\nInfo: single compartment model: locating \"J168\" in default compartment\r\nInfo: single compartment model: locating \"J169\" in default compartment\r\nInfo: single compartment model: locating \"J170\" in default compartment\r\nInfo: single compartment model: locating \"J171\" in default compartment\r\nInfo: single compartment model: locating \"J172\" in default compartment\r\nInfo: single compartment model: locating \"J173\" in default compartment\r\nInfo: single compartment model: locating \"J174\" in default compartment\r\nInfo: single compartment model: locating \"J175\" in default compartment\r\nInfo: single compartment model: locating \"J176\" in default compartment\r\nInfo: single compartment model: locating \"J177\" in default compartment\r\nInfo: single compartment model: locating \"J178\" in default compartment\r\nInfo: single compartment model: locating \"J179\" in default compartment\r\nInfo: single compartment model: locating \"J180\" in default compartment\r\nInfo: single compartment model: locating \"J181\" in default compartment\r\nInfo: single compartment model: locating \"J182\" in default compartment\r\nInfo: single compartment model: locating \"J183\" in default compartment\r\nInfo: single compartment model: locating \"J184\" in default compartment\r\nInfo: single compartment model: locating \"J185\" in default compartment\r\nInfo: single compartment model: locating \"J186\" in default compartment\r\nInfo: single compartment model: locating \"J187\" in default compartment\r\nInfo: single compartment model: locating \"J188\" in default compartment\r\nInfo: single compartment model: locating \"J189\" in default compartment\r\nInfo: single compartment model: locating \"J190\" in default compartment\r\nInfo: single compartment model: locating \"J191\" in default compartment\r\nInfo: single compartment model: locating \"J192\" in default compartment\r\nInfo: single compartment model: locating \"J193\" in default compartment\r\nInfo: single compartment model: locating \"J194\" in default compartment\r\nInfo: single compartment model: locating \"J195\" in default compartment\r\nInfo: single compartment model: locating \"J196\" in default compartment\r\nInfo: single compartment model: locating \"J197\" in default compartment\r\nInfo: single compartment model: locating \"J198\" in default compartment\r\nInfo: single compartment model: locating \"J199\" in default compartment\r\nInfo: single compartment model: locating \"J200\" in default compartment\r\nInfo: single compartment model: locating \"J201\" in default compartment\r\nInfo: single compartment model: locating \"J202\" in default compartment\r\nInfo: single compartment model: locating \"J203\" in default compartment\r\nInfo: single compartment model: locating \"J204\" in default compartment\r\nInfo: single compartment model: locating \"J205\" in default compartment\r\nInfo: single compartment model: locating \"J206\" in default compartment\r\nInfo: single compartment model: locating \"J207\" in default compartment\r\nInfo: single compartment model: locating \"J208\" in default compartment\r\nInfo: single compartment model: locating \"J209\" in default compartment\r\nInfo: single compartment model: locating \"J210\" in default compartment\r\nInfo: single compartment model: locating \"J211\" in default compartment\r\nInfo: single compartment model: locating \"J212\" in default compartment\r\nInfo: single compartment model: locating \"J213\" in default compartment\r\nInfo: single compartment model: locating \"J214\" in default compartment\r\nInfo: single compartment model: locating \"J215\" in default compartment\r\nInfo: single compartment model: locating \"J216\" in default compartment\r\nInfo: single compartment model: locating \"J217\" in default compartment\r\nInfo: single compartment model: locating \"J218\" in default compartment\r\nInfo: single compartment model: locating \"J219\" in default compartment\r\nInfo: single compartment model: locating \"EX_coenzyme_A\" in default compartment\r\nInfo: single compartment model: locating \"EX_apo_AcpM\" in default compartment\r\nInfo: single compartment model: locating \"EX_ADP\" in default compartment\r\nInfo: single compartment model: locating \"EX_acyl_carrier_protein\" in default compartment\r\nInfo: single compartment model: locating \"EX_AccB\" in default compartment\r\nInfo: single compartment model: locating \"EX_biotin\" in default compartment\r\nInfo: single compartment model: locating \"EX_ATP\" in default compartment\r\nInfo: single compartment model: locating \"EX_pyrophosphate\" in default compartment\r\nInfo: single compartment model: locating \"EX_AMP\" in default compartment\r\nInfo: single compartment model: locating \"Sink_BCCP_biotin\" in default compartment\r\nInfo: single compartment model: locating \"EX_HCO3\" in default compartment\r\nInfo: single compartment model: locating \"EX_phosphate\" in default compartment\r\nInfo: single compartment model: locating \"EX_H\" in default compartment\r\nInfo: single compartment model: locating \"EX_acetyl_coA\" in default compartment\r\nInfo: single compartment model: locating \"EX_ACP_FAS\" in default compartment\r\nInfo: single compartment model: locating \"EX_CO2\" in default compartment\r\nInfo: single compartment model: locating \"EX_NADPH\" in default compartment\r\nInfo: single compartment model: locating \"EX_NADP\" in default compartment\r\nInfo: single compartment model: locating \"EX_H2O\" in default compartment\r\nInfo: single compartment model: locating \"EX_NADH\" in default compartment\r\nInfo: single compartment model: locating \"EX_NAD\" in default compartment\r\nInfo: single compartment model: locating \"EX_S_adenosyl_L_methionine\" in default compartment\r\nInfo: single compartment model: locating \"EX_S_adenosyl_L_homocysteine\" in default compartment\r\nInfo: single compartment model: locating \"EX_alpha_mycolate\" in default compartment\r\nInfo: single compartment model: locating \"EX_cis_methoxy_mycolate\" in default compartment\r\nInfo: single compartment model: locating \"EX_trans_methoxy_mycolate\" in default compartment\r\nInfo: single compartment model: locating \"EX_cis_keto_mycolate\" in default compartment\r\nInfo: single compartment model: locating \"EX_trans_keto_mycolate\" in default compartment\r\nInfo: single compartment model: locating \"biomass\" in default compartment\r\nInfo: single compartment model: locating \"EX_biomass\" in default compartment\r\nWriting file: /tmp/tmpm4_1_9e5.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpi6lzt4a4/MAP.xml\r\nout: /tmp/tmpm4_1_9e5.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpm4_1_9e5.psc loading ..... ","duration":7.736528,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"pysces.PyscesModel.Simulate"},{"key":"arguments","value":{"cvode_abstol":1e-15,"cvode_mxstep":1000,"cvode_reltol":1e-9,"cvode_return_event_timepoints":false,"cvode_stats":false}}]}],"outputs":[{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":2.487667,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_M_coenzyme_A","status":"SUCCEEDED"},{"id":"autogen_task1_M_apo_AcpM","status":"SUCCEEDED"},{"id":"autogen_task1_M_ADP","status":"SUCCEEDED"},{"id":"autogen_task1_M_acyl_carrier_protein","status":"SUCCEEDED"},{"id":"autogen_task1_M_AccB","status":"SUCCEEDED"},{"id":"autogen_task1_M_biotin","status":"SUCCEEDED"},{"id":"autogen_task1_M_ATP","status":"SUCCEEDED"},{"id":"autogen_task1_M_pyrophosphate","status":"SUCCEEDED"},{"id":"autogen_task1_M_AMP","status":"SUCCEEDED"},{"id":"autogen_task1_M_BCCP_biotin","status":"SUCCEEDED"},{"id":"autogen_task1_M_HCO3","status":"SUCCEEDED"},{"id":"autogen_task1_M_phosphate","status":"SUCCEEDED"},{"id":"autogen_task1_M_BCCP_biotin_CO2","status":"SUCCEEDED"},{"id":"autogen_task1_M_H","status":"SUCCEEDED"},{"id":"autogen_task1_M_acetyl_coA","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_coA","status":"SUCCEEDED"},{"id":"autogen_task1_M_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C2_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C2_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C4_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_CO2","status":"SUCCEEDED"},{"id":"autogen_task1_M_NADPH","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C4_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_NADP","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C4_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_H2O","status":"SUCCEEDED"},{"id":"autogen_task1_M_NADH","status":"SUCCEEDED"},{"id":"autogen_task1_M_C4_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_NAD","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C4_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C6_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C6_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C6_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C6_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C6_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C8_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C8_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C8_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C8_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C8_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C10_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C10_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C10_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C10_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C10_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C12_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C12_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C12_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C12_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C12_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C14_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C14_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C14_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C14_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C14_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C16_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C16_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C16_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C16_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C16_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C18_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C18_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C18_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_C18_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_malonyl_C18_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_beta_keto_C20_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_D_3_hydroxy_C20_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_task1_M_trans_delta_2_enoyl_C20_acyl_ACP_FAS","status":"SUCCEEDED"},{"id":"autogen_ta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task1_M_19_31_cp_C54_acyl_ACP_AMP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_2_carboxyl_C24_acyl_CoA","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_alpha_mycolate","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_delta_37_methyl_hydroxy_C55_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_delta_37_methyl_hydroxymethyl_C56_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_methoxy_C57_meroacyl_cp_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_methoxy_C57_meroacyl_cp_ACP_AMP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_methoxy_mycolate","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_delta_2_cis_19_trans_37_enoyl_methyl_C55_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_delta_37_methyl_hydroxy_C56_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_delta_3_methyl_hydroxymethyl_C57_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_methoxy_C58_meroacyl_cp_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_methoxy_C58_meroacyl_cp_ACP_AMP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_methoxy_mycolate","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_delta_37_methyl_hydroxy_C59_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_delta_37_methyl_keto_C59_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_keto_C60_meroacyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_keto_C60_meroacyl_ACP_AMP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_cis_keto_mycolate","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_delta_37_methyl_hydroxy_C60_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_delta_37_methyl_keto_C60_acyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_keto_C61_meroacyl_ACP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_keto_C61_meroacyl_ACP_AMP","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_trans_keto_mycolate","status":"SUCCEEDED"},{"id":"autogen_curve_task1_M_biomass","status":"SUCCEEDED"}]}]},{"location":"MODEL8568434338_url.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n Executed 1 tasks and 2 outputs:\r\n Tasks:\r\n Succeeded: 1\r\n Skipped: 0\r\n Failed: 0\r\n Outputs:\r\n Succeeded: 2\r\n Skipped: 0\r\n Failed: 0\r\nExecuting SED-ML file 2: MODEL8568434338_url.sedml ...\r\n Found 1 tasks and 2 outputs:\r\n Tasks:\r\n `task1`\r\n Outputs:\r\n `autogen_plot_for_task1`\r\n `autogen_report_for_task1`\r\n Executing task 1: `task1`\r\n Executing simulation ...CVODE time for 1001 points: 0.598766565322876\r\n \u001b[34msucceeded\u001b[0m\r\n Generating 2 outputs ...\r\n Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n Generating output 2: `autogen_plot_for_task1` ...","duration":10.298514,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Check SBML support is at action level 2\r\nSBML file is L2V1\r\nWARNING: No rate equation for reaction J001 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J002 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J003 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J004 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J005 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J006 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J007 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J008 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J009 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J010 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J011 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J012 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J013 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J014 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J015 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J016 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J017 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J018 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J019 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J020 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J021 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J022 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J023 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J024 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J025 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J026 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J027 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J028 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J029 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J030 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J031 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J032 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J033 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J034 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J035 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J036 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J037 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J038 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J039 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J040 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J041 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J042 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J043 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J044 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J045 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J046 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J047 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J048 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J049 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J050 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J051 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J052 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J053 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J054 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J055 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J056 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J057 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J058 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J059 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J060 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J061 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J062 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J063 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J064 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J065 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J066 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J067 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J068 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J069 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J070 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J071 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J072 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J073 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J074 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J075 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J076 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J077 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J078 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J079 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J080 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J081 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J082 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J083 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J084 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J085 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J086 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J087 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J088 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J089 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J090 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J091 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J092 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J093 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J094 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J095 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J096 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J097 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J098 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J099 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J100 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J101 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J102 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J103 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J104 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J105 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J106 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J107 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J108 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J109 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J110 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J111 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J112 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J113 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J114 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J115 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J116 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J117 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J118 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J119 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J120 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J121 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J122 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J123 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J124 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J125 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J126 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J127 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J128 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J129 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J130 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J131 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J132 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J133 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J134 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J135 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J136 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J137 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J138 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J139 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J140 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J141 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J142 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J143 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J144 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J145 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J146 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J147 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J148 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J149 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J150 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J151 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J152 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J153 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J154 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J155 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J156 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J157 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J158 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J159 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J160 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J161 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J162 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J163 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J164 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J165 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J166 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J167 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J168 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J169 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J170 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J171 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J172 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J173 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J174 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J175 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J176 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J177 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J178 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J179 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J180 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J181 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J182 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J183 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J184 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J185 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J186 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J187 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J188 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J189 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J190 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J191 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J192 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J193 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J194 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J195 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J196 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J197 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J198 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J199 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J200 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J201 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J202 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J203 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J204 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J205 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J206 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J207 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J208 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J209 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J210 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J211 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J212 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J213 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J214 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J215 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J216 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J217 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J218 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nWARNING: No rate equation for reaction J219 in file: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\n*******************************************************************\r\n\r\nFast attribute ignored for reactions:\r\n['J001', 'J002', 'J003', 'J004', 'J005', 'J006', 'J007', 'J008', 'J009', 'J010', 'J011', 'J012', 'J013', 'J014', 'J015', 'J016', 'J017', 'J018', 'J019', 'J020', 'J021', 'J022', 'J023', 'J024', 'J025', 'J026', 'J027', 'J028', 'J029', 'J030', 'J031', 'J032', 'J033', 'J034', 'J035', 'J036', 'J037', 'J038', 'J039', 'J040', 'J041', 'J042', 'J043', 'J044', 'J045', 'J046', 'J047', 'J048', 'J049', 'J050', 'J051', 'J052', 'J053', 'J054', 'J055', 'J056', 'J057', 'J058', 'J059', 'J060', 'J061', 'J062', 'J063', 'J064', 'J065', 'J066', 'J067', 'J068', 'J069', 'J070', 'J071', 'J072', 'J073', 'J074', 'J075', 'J076', 'J077', 'J078', 'J079', 'J080', 'J081', 'J082', 'J083', 'J084', 'J085', 'J086', 'J087', 'J088', 'J089', 'J090', 'J091', 'J092', 'J093', 'J094', 'J095', 'J096', 'J097', 'J098', 'J099', 'J100', 'J101', 'J102', 'J103', 'J104', 'J105', 'J106', 'J107', 'J108', 'J109', 'J110', 'J111', 'J112', 'J113', 'J114', 'J115', 'J116', 'J117', 'J118', 'J119', 'J120', 'J121', 'J122', 'J123', 'J124', 'J125', 'J126', 'J127', 'J128', 'J129', 'J130', 'J131', 'J132', 'J133', 'J134', 'J135', 'J136', 'J137', 'J138', 'J139', 'J140', 'J141', 'J142', 'J143', 'J144', 'J145', 'J146', 'J147', 'J148', 'J149', 'J150', 'J151', 'J152', 'J153', 'J154', 'J155', 'J156', 'J157', 'J158', 'J159', 'J160', 'J161', 'J162', 'J163', 'J164', 'J165', 'J166', 'J167', 'J168', 'J169', 'J170', 'J171', 'J172', 'J173', 'J174', 'J175', 'J176', 'J177', 'J178', 'J179', 'J180', 'J181', 'J182', 'J183', 'J184', 'J185', 'J186', 'J187', 'J188', 'J189', 'J190', 'J191', 'J192', 'J193', 'J194', 'J195', 'J196', 'J197', 'J198', 'J199', 'J200', 'J201', 'J202', 'J203', 'J204', 'J205', 'J206', 'J207', 'J208', 'J209', 'J210', 'J211', 'J212', 'J213', 'J214', 'J215', 'J216', 'J217', 'J218', 'J219'] \r\n\r\n*******************************************************************\r\n\r\n\r\nWARNING: Uninitialised parameters: ['J'] (value set to zero)\r\nInfo: single compartment model: locating \"J001\" in default compartment\r\nInfo: single compartment model: locating \"J002\" in default compartment\r\nInfo: single compartment model: locating \"J003\" in default compartment\r\nInfo: single compartment model: locating \"J004\" in default compartment\r\nInfo: single compartment model: locating \"J005\" in default compartment\r\nInfo: single compartment model: locating \"J006\" in default compartment\r\nInfo: single compartment model: locating \"J007\" in default compartment\r\nInfo: single compartment model: locating \"J008\" in default compartment\r\nInfo: single compartment model: locating \"J009\" in default compartment\r\nInfo: single compartment model: locating \"J010\" in default compartment\r\nInfo: single compartment model: locating \"J011\" in default compartment\r\nInfo: single compartment model: locating \"J012\" in default compartment\r\nInfo: single compartment model: locating \"J013\" in default compartment\r\nInfo: single compartment model: locating \"J014\" in default compartment\r\nInfo: single compartment model: locating \"J015\" in default compartment\r\nInfo: single compartment model: locating \"J016\" in default compartment\r\nInfo: single compartment model: locating \"J017\" in default compartment\r\nInfo: single compartment model: locating \"J018\" in default compartment\r\nInfo: single compartment model: locating \"J019\" in default compartment\r\nInfo: single compartment model: locating \"J020\" in default compartment\r\nInfo: single compartment model: locating \"J021\" in default compartment\r\nInfo: single compartment model: locating \"J022\" in default compartment\r\nInfo: single compartment model: locating \"J023\" in default compartment\r\nInfo: single compartment model: locating \"J024\" in default compartment\r\nInfo: single compartment model: locating \"J025\" in default compartment\r\nInfo: single compartment model: locating \"J026\" in default compartment\r\nInfo: single compartment model: locating \"J027\" in default compartment\r\nInfo: single compartment model: locating \"J028\" in default compartment\r\nInfo: single compartment model: locating \"J029\" in default compartment\r\nInfo: single compartment model: locating \"J030\" in default compartment\r\nInfo: single compartment model: locating \"J031\" in default compartment\r\nInfo: single compartment model: locating \"J032\" in default compartment\r\nInfo: single compartment model: locating \"J033\" in default compartment\r\nInfo: single compartment model: locating \"J034\" in default compartment\r\nInfo: single compartment model: locating \"J035\" in default compartment\r\nInfo: single compartment model: locating \"J036\" in default compartment\r\nInfo: single compartment model: locating \"J037\" in default compartment\r\nInfo: single compartment model: locating \"J038\" in default compartment\r\nInfo: single compartment model: locating \"J039\" in default compartment\r\nInfo: single compartment model: locating \"J040\" in default compartment\r\nInfo: single compartment model: locating \"J041\" in default compartment\r\nInfo: single compartment model: locating \"J042\" in default compartment\r\nInfo: single compartment model: locating \"J043\" in default compartment\r\nInfo: single compartment model: locating \"J044\" in default compartment\r\nInfo: single compartment model: locating \"J045\" in default compartment\r\nInfo: single compartment model: locating \"J046\" in default compartment\r\nInfo: single compartment model: locating \"J047\" in default compartment\r\nInfo: single compartment model: locating \"J048\" in default compartment\r\nInfo: single compartment model: locating \"J049\" in default compartment\r\nInfo: single compartment model: locating \"J050\" in default compartment\r\nInfo: single compartment model: locating \"J051\" in default compartment\r\nInfo: single compartment model: locating \"J052\" in default compartment\r\nInfo: single compartment model: locating \"J053\" in default compartment\r\nInfo: single compartment model: locating \"J054\" in default compartment\r\nInfo: single compartment model: locating \"J055\" in default compartment\r\nInfo: single compartment model: locating \"J056\" in default compartment\r\nInfo: single compartment model: locating \"J057\" in default compartment\r\nInfo: single compartment model: locating \"J058\" in default compartment\r\nInfo: single compartment model: locating \"J059\" in default compartment\r\nInfo: single compartment model: locating \"J060\" in default compartment\r\nInfo: single compartment model: locating \"J061\" in default compartment\r\nInfo: single compartment model: locating \"J062\" in default compartment\r\nInfo: single compartment model: locating \"J063\" in default compartment\r\nInfo: single compartment model: locating \"J064\" in default compartment\r\nInfo: single compartment model: locating \"J065\" in default compartment\r\nInfo: single compartment model: locating \"J066\" in default compartment\r\nInfo: single compartment model: locating \"J067\" in default compartment\r\nInfo: single compartment model: locating \"J068\" in default compartment\r\nInfo: single compartment model: locating \"J069\" in default compartment\r\nInfo: single compartment model: locating \"J070\" in default compartment\r\nInfo: single compartment model: locating \"J071\" in default compartment\r\nInfo: single compartment model: locating \"J072\" in default compartment\r\nInfo: single compartment model: locating \"J073\" in default compartment\r\nInfo: single compartment model: locating \"J074\" in default compartment\r\nInfo: single compartment model: locating \"J075\" in default compartment\r\nInfo: single compartment model: locating \"J076\" in default compartment\r\nInfo: single compartment model: locating \"J077\" in default compartment\r\nInfo: single compartment model: locating \"J078\" in default compartment\r\nInfo: single compartment model: locating \"J079\" in default compartment\r\nInfo: single compartment model: locating \"J080\" in default compartment\r\nInfo: single compartment model: locating \"J081\" in default compartment\r\nInfo: single compartment model: locating \"J082\" in default compartment\r\nInfo: single compartment model: locating \"J083\" in default compartment\r\nInfo: single compartment model: locating \"J084\" in default compartment\r\nInfo: single compartment model: locating \"J085\" in default compartment\r\nInfo: single compartment model: locating \"J086\" in default compartment\r\nInfo: single compartment model: locating \"J087\" in default compartment\r\nInfo: single compartment model: locating \"J088\" in default compartment\r\nInfo: single compartment model: locating \"J089\" in default compartment\r\nInfo: single compartment model: locating \"J090\" in default compartment\r\nInfo: single compartment model: locating \"J091\" in default compartment\r\nInfo: single compartment model: locating \"J092\" in default compartment\r\nInfo: single compartment model: locating \"J093\" in default compartment\r\nInfo: single compartment model: locating \"J094\" in default compartment\r\nInfo: single compartment model: locating \"J095\" in default compartment\r\nInfo: single compartment model: locating \"J096\" in default compartment\r\nInfo: single compartment model: locating \"J097\" in default compartment\r\nInfo: single compartment model: locating \"J098\" in default compartment\r\nInfo: single compartment model: locating \"J099\" in default compartment\r\nInfo: single compartment model: locating \"J100\" in default compartment\r\nInfo: single compartment model: locating \"J101\" in default compartment\r\nInfo: single compartment model: locating \"J102\" in default compartment\r\nInfo: single compartment model: locating \"J103\" in default compartment\r\nInfo: single compartment model: locating \"J104\" in default compartment\r\nInfo: single compartment model: locating \"J105\" in default compartment\r\nInfo: single compartment model: locating \"J106\" in default compartment\r\nInfo: single compartment model: locating \"J107\" in default compartment\r\nInfo: single compartment model: locating \"J108\" in default compartment\r\nInfo: single compartment model: locating \"J109\" in default compartment\r\nInfo: single compartment model: locating \"J110\" in default compartment\r\nInfo: single compartment model: locating \"J111\" in default compartment\r\nInfo: single compartment model: locating \"J112\" in default compartment\r\nInfo: single compartment model: locating \"J113\" in default compartment\r\nInfo: single compartment model: locating \"J114\" in default compartment\r\nInfo: single compartment model: locating \"J115\" in default compartment\r\nInfo: single compartment model: locating \"J116\" in default compartment\r\nInfo: single compartment model: locating \"J117\" in default compartment\r\nInfo: single compartment model: locating \"J118\" in default compartment\r\nInfo: single compartment model: locating \"J119\" in default compartment\r\nInfo: single compartment model: locating \"J120\" in default compartment\r\nInfo: single compartment model: locating \"J121\" in default compartment\r\nInfo: single compartment model: locating \"J122\" in default compartment\r\nInfo: single compartment model: locating \"J123\" in default compartment\r\nInfo: single compartment model: locating \"J124\" in default compartment\r\nInfo: single compartment model: locating \"J125\" in default compartment\r\nInfo: single compartment model: locating \"J126\" in default compartment\r\nInfo: single compartment model: locating \"J127\" in default compartment\r\nInfo: single compartment model: locating \"J128\" in default compartment\r\nInfo: single compartment model: locating \"J129\" in default compartment\r\nInfo: single compartment model: locating \"J130\" in default compartment\r\nInfo: single compartment model: locating \"J131\" in default compartment\r\nInfo: single compartment model: locating \"J132\" in default compartment\r\nInfo: single compartment model: locating \"J133\" in default compartment\r\nInfo: single compartment model: locating \"J134\" in default compartment\r\nInfo: single compartment model: locating \"J135\" in default compartment\r\nInfo: single compartment model: locating \"J136\" in default compartment\r\nInfo: single compartment model: locating \"J137\" in default compartment\r\nInfo: single compartment model: locating \"J138\" in default compartment\r\nInfo: single compartment model: locating \"J139\" in default compartment\r\nInfo: single compartment model: locating \"J140\" in default compartment\r\nInfo: single compartment model: locating \"J141\" in default compartment\r\nInfo: single compartment model: locating \"J142\" in default compartment\r\nInfo: single compartment model: locating \"J143\" in default compartment\r\nInfo: single compartment model: locating \"J144\" in default compartment\r\nInfo: single compartment model: locating \"J145\" in default compartment\r\nInfo: single compartment model: locating \"J146\" in default compartment\r\nInfo: single compartment model: locating \"J147\" in default compartment\r\nInfo: single compartment model: locating \"J148\" in default compartment\r\nInfo: single compartment model: locating \"J149\" in default compartment\r\nInfo: single compartment model: locating \"J150\" in default compartment\r\nInfo: single compartment model: locating \"J151\" in default compartment\r\nInfo: single compartment model: locating \"J152\" in default compartment\r\nInfo: single compartment model: locating \"J153\" in default compartment\r\nInfo: single compartment model: locating \"J154\" in default compartment\r\nInfo: single compartment model: locating \"J155\" in default compartment\r\nInfo: single compartment model: locating \"J156\" in default compartment\r\nInfo: single compartment model: locating \"J157\" in default compartment\r\nInfo: single compartment model: locating \"J158\" in default compartment\r\nInfo: single compartment model: locating \"J159\" in default compartment\r\nInfo: single compartment model: locating \"J160\" in default compartment\r\nInfo: single compartment model: locating \"J161\" in default compartment\r\nInfo: single compartment model: locating \"J162\" in default compartment\r\nInfo: single compartment model: locating \"J163\" in default compartment\r\nInfo: single compartment model: locating \"J164\" in default compartment\r\nInfo: single compartment model: locating \"J165\" in default compartment\r\nInfo: single compartment model: locating \"J166\" in default compartment\r\nInfo: single compartment model: locating \"J167\" in default compartment\r\nInfo: single compartment model: locating \"J168\" in default compartment\r\nInfo: single compartment model: locating \"J169\" in default compartment\r\nInfo: single compartment model: locating \"J170\" in default compartment\r\nInfo: single compartment model: locating \"J171\" in default compartment\r\nInfo: single compartment model: locating \"J172\" in default compartment\r\nInfo: single compartment model: locating \"J173\" in default compartment\r\nInfo: single compartment model: locating \"J174\" in default compartment\r\nInfo: single compartment model: locating \"J175\" in default compartment\r\nInfo: single compartment model: locating \"J176\" in default compartment\r\nInfo: single compartment model: locating \"J177\" in default compartment\r\nInfo: single compartment model: locating \"J178\" in default compartment\r\nInfo: single compartment model: locating \"J179\" in default compartment\r\nInfo: single compartment model: locating \"J180\" in default compartment\r\nInfo: single compartment model: locating \"J181\" in default compartment\r\nInfo: single compartment model: locating \"J182\" in default compartment\r\nInfo: single compartment model: locating \"J183\" in default compartment\r\nInfo: single compartment model: locating \"J184\" in default compartment\r\nInfo: single compartment model: locating \"J185\" in default compartment\r\nInfo: single compartment model: locating \"J186\" in default compartment\r\nInfo: single compartment model: locating \"J187\" in default compartment\r\nInfo: single compartment model: locating \"J188\" in default compartment\r\nInfo: single compartment model: locating \"J189\" in default compartment\r\nInfo: single compartment model: locating \"J190\" in default compartment\r\nInfo: single compartment model: locating \"J191\" in default compartment\r\nInfo: single compartment model: locating \"J192\" in default compartment\r\nInfo: single compartment model: locating \"J193\" in default compartment\r\nInfo: single compartment model: locating \"J194\" in default compartment\r\nInfo: single compartment model: locating \"J195\" in default compartment\r\nInfo: single compartment model: locating \"J196\" in default compartment\r\nInfo: single compartment model: locating \"J197\" in default compartment\r\nInfo: single compartment model: locating \"J198\" in default compartment\r\nInfo: single compartment model: locating \"J199\" in default compartment\r\nInfo: single compartment model: locating \"J200\" in default compartment\r\nInfo: single compartment model: locating \"J201\" in default compartment\r\nInfo: single compartment model: locating \"J202\" in default compartment\r\nInfo: single compartment model: locating \"J203\" in default compartment\r\nInfo: single compartment model: locating \"J204\" in default compartment\r\nInfo: single compartment model: locating \"J205\" in default compartment\r\nInfo: single compartment model: locating \"J206\" in default compartment\r\nInfo: single compartment model: locating \"J207\" in default compartment\r\nInfo: single compartment model: locating \"J208\" in default compartment\r\nInfo: single compartment model: locating \"J209\" in default compartment\r\nInfo: single compartment model: locating \"J210\" in default compartment\r\nInfo: single compartment model: locating \"J211\" in default compartment\r\nInfo: single compartment model: locating \"J212\" in default compartment\r\nInfo: single compartment model: locating \"J213\" in default compartment\r\nInfo: single compartment model: locating \"J214\" in default compartment\r\nInfo: single compartment model: locating \"J215\" in default compartment\r\nInfo: single compartment model: locating \"J216\" in default compartment\r\nInfo: single compartment model: locating \"J217\" in default compartment\r\nInfo: single compartment model: locating \"J218\" in default compartment\r\nInfo: single compartment model: locating \"J219\" in default compartment\r\nWriting file: /tmp/tmpppbnnauo.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpi6lzt4a4/MODEL8568434338_url.xml\r\nout: /tmp/tmpppbnnauo.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmpppbnnauo.psc loading ..... \r\nParsing file: /tmp/tmpppbnnauo.psc\r\nInfo: No reagents have been fixed\r\nInfo: \"G001\" has been initialised but does not occur in a rate equation\r\nInfo: \"G002\" has been initialised but does not occur in a rate equation\r\nInfo: \"G003\" has been initialised but does not occur in a rate equation\r\nInfo: \"G004\" has been initialised but does not occur in a rate equation\r\nInfo: \"G005\" has been initialised but does not occur in a rate equation\r\nInfo: \"G006\" has been initialised but does not occur in a rate equation\r\nInfo: \"G007\" has been initialised but does not occur in a rate equation\r\nInfo: \"G008\" has been initialised but does not occur in a rate equation\r\nInfo: \"G009\" has been initialised but does not occur in a rate equation\r\nInfo: \"G010\" has been initialised but does not occur in a rate equation\r\nInfo: \"G011\" has been initialised but does not occur in a rate equation\r\nInfo: \"G012\" has been initialised but does not occur in a rate equation\r\nInfo: \"G013\" has been initialised but does not occur in a rate equation\r\nInfo: \"G014\" has been initialised but does not occur in a rate equation\r\nInfo: \"G015\" has been initialised but does not occur in a rate equation\r\nInfo: \"G016\" has been initialised but does not occur in a rate equation\r\nInfo: \"G017\" has been initialised but does not occur in a rate equation\r\nInfo: \"G018\" has been initialised but does not occur in a rate equation\r\nInfo: \"G019\" has been initialised but does not occur in a rate equation\r\nInfo: \"G020\" has been initialised but does not occur in a rate equation\r\nInfo: \"G021\" has been initialised but does not occur in a rate equation\r\nInfo: \"G022\" has been initialised but does not occur in a rate equation\r\nInfo: \"G023\" has been initialised but does not occur in a rate equation\r\nInfo: \"G024\" has been initialised but does not occur in a rate equation\r\nInfo: \"G025\" has been initialised but does not occur in a rate equation\r\nInfo: \"G026\" has been initialised but does not occur in a rate equation\r\nInfo: \"G027\" has been initialised but does not occur in a rate equation\r\nInfo: \"G028\" has been initialised but does not occur in a rate equation\r\n \r\nCalculating L matrix . . . . . . . . . . . done.\r\nCalculating K matrix . . . . . . . . . . . . . done.\r\n \r\n","duration":2.897312,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"pysces.PyscesModel.Simulate"},{"key":"arguments","value":{"cvode_abstol":1e-15,"cvode_mxstep":1000,"cvode_reltol":1e-9,"cvode_return_event_timepoints":false,"cvode_stats":false}}]}],"outputs":[{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":2.528769,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_G001","status":"SUCCEEDED"},{"id":"autogen_task1_X001","status":"SUCCEEDED"},{"id":"autogen_task1_X002","status":"SUCCEEDED"},{"id":"autogen_task1_X003","status":"SUCCEEDED"},{"id":"autogen_task1_X004","status":"SUCCEEDED"},{"id":"autogen_task1_G002","status":"SUCCEEDED"},{"id":"autogen_task1_X005","status":"SUCCEEDED"},{"id":"autogen_task1_X006","status":"SUCCEEDED"},{"id":"autogen_task1_X007","status":"SUCCEEDED"},{"id":"autogen_task1_X008","status":"SUCCEEDED"},{"id":"autogen_task1_X009","status":"SUCCEEDED"},{"id":"autogen_task1_X010","status":"SUCCEEDED"},{"id":"autogen_task1_G003","status":"SUCCEEDED"},{"id":"autogen_task1_X011","status":"SUCCEEDED"},{"id":"autogen_task1_X012","status":"SUCCEEDED"},{"id":"autogen_task1_X013","status":"SUCCEEDED"},{"id":"autogen_task1_X014","status":"SUCCEEDED"},{"id":"autogen_task1_G004","status":"SUCCEEDED"},{"id":"autogen_task1_X015","status":"SUCCEEDED"},{"id":"autogen_task1_X016","status":"SUCCEEDED"},{"id":"autogen_task1_G005","status":"SUCCEEDED"},{"id":"autogen_task1_X017","status":"SUCCEEDED"},{"id":"autogen_task1_X018","status":"SUCCEEDED"},{"id":"autogen_task1_X019","status":"SUCCEEDED"},{"id":"autogen_task1_X020","status":"SUCCEEDED"},{"id":"autogen_task1_X021","status":"SUCCEEDED"},{"id":"autogen_task1_X022","status":"SUCCEEDED"},{"id":"autogen_task1_X023","status":"SUCCEEDED"},{"id":"autogen_task1_X024","status":"SUCCEEDED"},{"id":"autogen_task1_X025","status":"SUCCEEDED"},{"id":"autogen_task1_X026","status":"SUCCEEDED"},{"id":"autogen_task1_X027","status":"SUCCEEDED"},{"id":"autogen_task1_X028","status":"SUCCEEDED"},{"id":"autogen_task1_X029","status":"SUCCEEDED"},{"id":"autogen_task1_X030","status":"SUCCEEDED"},{"id":"autogen_task1_X031","status":"SUCCEEDED"},{"id":"autogen_task1_X032","status":"SUCCEEDED"},{"id":"autogen_task1_X033","status":"SUCCEEDED"},{"id":"autogen_task1_X034","status":"SUCCEEDED"},{"id":"autogen_task1_X035","status":"SUCCEEDED"},{"id":"autogen_task1_X036","status":"SUCCEEDED"},{"id":"autogen_task1_X037","status":"SUCCEEDED"},{"id":"autogen_task1_X038","status":"SUCCEEDED"},{"id":"autogen_task1_X039","status":"SUCCEEDED"},{"id":"autogen_task1_X040","status":"SUCCEEDED"},{"id":"autogen_task1_X041","status":"SUCCEEDED"},{"id":"autogen_task1_X042","status":"SUCCEEDED"},{"id":"autogen_task1_X043","status":"SUCCEEDED"},{"id":"autogen_task1_X044","status":"SUCCEEDED"},{"id":"autogen_task1_X045","status":"SUCCEEDED"},{"id":"autogen_task1_X046","status":"SUCCEEDED"},{"id":"autogen_task1_X047","status":"SUCCEEDED"},{"id":"autogen_task1_X048","status":"SUCCEEDED"},{"id":"autogen_task1_X049","status":"SUCCEEDED"},{"id":"autogen_task1_X050","status":"SUCCEEDED"},{"id":"autogen_task1_X051","status":"SUCCEEDED"},{"id":"autogen_task1_X052","status":"SUCCEEDED"},{"id":"autogen_task1_X053","status":"SUCCEEDED"},{"id":"autogen_task1_X054","status":"SUCCEEDED"},{"id":"autogen_task1_X055","status":"SUCCEEDED"},{"id":"autogen_task1_X056","status":"SUCCEEDED"},{"id":"autogen_task1_X057","status":"SUCCEEDED"},{"id":"autogen_task1_X058","status":"SUCCEEDED"},{"id":"autogen_task1_X059","status":"SUCCEEDED"},{"id":"autogen_task1_X060","status":"SUCCEEDED"},{"id":"autogen_task1_X061","status":"SUCCEEDED"},{"id":"autogen_task1_X062","status":"SUCCEEDED"},{"id":"autogen_task1_X063","status":"SUCCEEDED"},{"id":"autogen_task1_X064","status":"SUCCEEDED"},{"id":"autogen_task1_X065","status":"SUCCEEDED"},{"id":"autogen_task1_X066","status":"SUCCEEDED"},{"id":"autogen_task1_X067","status":"SUCCEEDED"},{"id":"autogen_task1_X068","status":"SUCCEEDED"},{"id":"autogen_task1_X069","status":"SUCCEEDED"},{"id":"autogen_task1_X070","status":"SUCCEEDED"},{"id":"autogen_task1_X071","status":"SUCCEEDED"},{"id":"autogen_task1_X072","status":"SUCCEEDED"},{"id":"autogen_task1_X073","status":"SUCCEEDED"},{"id":"autogen_task1_X074","status":"SUCCEEDED"},{"id":"autogen_task1_X075","status":"SUCCEEDED"},{"id":"autogen_task1_X076","status":"SUCCEEDED"},{"id":"autogen_task1_X077","status":"SUCCEEDED"},{"id":"autogen_task1_X078","status":"SUCCEEDED"},{"id":"autogen_task1_X079","status":"SUCCEEDED"},{"id":"autogen_task1_X080","status":"SUCCEEDED"},{"id":"autogen_task1_X081","status":"SUCCEEDED"},{"id":"autogen_task1_G006","status":"SUCCEEDED"},{"id":"autogen_task1_X082","status":"SUCCEEDED"},{"id":"autogen_task1_G007","status":"SUCCEEDED"},{"id":"autogen_task1_X083","status":"SUCCEEDED"},{"id":"autogen_task1_G008","status":"SUCCEEDED"},{"id":"autogen_task1_X084","status":"SUCCEEDED"},{"id":"autogen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