{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    351      0 --:--:-- --:--:-- --:--:--   351\r100   139  100   139    0     0    348      0 --:--:-- --:--:-- --:--:--   348\n\r100  747k  100  747k    0     0  1415k      0 --:--:-- --:--:-- --:--:-- 1415k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\nCould not find GLIMDA.\nlibtk8.6.so: cannot open shared object file: No such file or directory\r\n\r\nPySCeS defaults to matplotlib's TKagg backend if not specified                          in the user configuration file, set \"matplotlib_backend = <backend>\" \r\nMatplotlib interface loaded (pysces.plt.m)\r\nPitcon routines available\r\nNLEQ2 routines available\r\nSBML support available\r\nYou are using NumPy (1.21.4) with SciPy (1.7.3)\r\nAssimulo CVode available\r\nRateChar is available\r\nParallel scanner is available\r\n\r\nPySCeS environment\r\n******************\r\npysces.model_dir = /home/FCAM/crbmapi/Pysces/psc\r\npysces.output_dir = /home/FCAM/crbmapi/Pysces\r\n\r\n\r\n***********************************************************************\r\n* Welcome to PySCeS (1.0.0) - Python Simulator for Cellular Systems   *\r\n*                http://pysces.sourceforge.net                        *\r\n* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2022  *\r\n* Triple-J Group for Molecular Cell Physiology                        *\r\n* Stellenbosch University, ZA and VU University Amsterdam, NL         *\r\n* PySCeS is distributed under the PySCeS (BSD style) licence, see     *\r\n* LICENCE.txt (supplied with this release) for details                *\r\n* Please cite PySCeS with: doi:10.1093/bioinformatics/bti046          *\r\n***********************************************************************\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 3.0 KiB/3.0 KiB (42.6 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/rawLog.txt\nCompleted 17.4 KiB/17.4 KiB (178.9 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 85%)\n  adding: outputs/BIOMD0000000397_url.sedml/ (stored 0%)\n  adding: outputs/BIOMD0000000397_url.sedml/autogen_plot_for_task1.pdf (deflated 12%)\n  adding: outputs/reports.h5 (deflated 5%)\n  adding: rawLog.txt (deflated 64%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/961.6 KiB (5.4 MiB/s) with 1 file(s) remaining\rCompleted 512.0 KiB/961.6 KiB (9.4 MiB/s) with 1 file(s) remaining\rCompleted 768.0 KiB/961.6 KiB (11.3 MiB/s) with 1 file(s) remaining\rCompleted 961.6 KiB/961.6 KiB (6.7 MiB/s) with 1 file(s) remaining \rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/outputs/reports.h5\nCompleted 256.0 KiB/1003.3 KiB (2.7 MiB/s) with 5 file(s) remaining\rCompleted 278.6 KiB/1003.3 KiB (2.7 MiB/s) with 5 file(s) remaining\rupload: ./_pystmptmp2bcfdbyc_parsetab.py to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/_pystmptmp2bcfdbyc_parsetab.py\nCompleted 278.6 KiB/1003.3 KiB (2.7 MiB/s) with 4 file(s) remaining\rCompleted 534.6 KiB/1003.3 KiB (5.0 MiB/s) with 4 file(s) remaining\rCompleted 557.2 KiB/1003.3 KiB (4.6 MiB/s) with 4 file(s) remaining\rupload: outputs/BIOMD0000000397_url.sedml/autogen_plot_for_task1.pdf to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/outputs/BIOMD0000000397_url.sedml/autogen_plot_for_task1.pdf\nCompleted 557.2 KiB/1003.3 KiB (4.6 MiB/s) with 3 file(s) remaining\rCompleted 813.2 KiB/1003.3 KiB (6.7 MiB/s) with 3 file(s) remaining\rCompleted 833.1 KiB/1003.3 KiB (6.7 MiB/s) with 3 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/outputs/plots.zip\nCompleted 833.1 KiB/1003.3 KiB (6.7 MiB/s) with 2 file(s) remaining\rCompleted 837.3 KiB/1003.3 KiB (6.4 MiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/rawLog.txt\nCompleted 837.3 KiB/1003.3 KiB (6.4 MiB/s) with 1 file(s) remaining\rCompleted 1003.3 KiB/1003.3 KiB (5.5 MiB/s) with 1 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/output.zip\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/BIOMD0000000397-biopax2.owl  \n  inflating: contents/BIOMD0000000397-biopax3.owl  \n  inflating: contents/BIOMD0000000397-matlab.m  \n  inflating: contents/BIOMD0000000397.m  \n  inflating: contents/BIOMD0000000397.ode  \n  inflating: contents/BIOMD0000000397.pdf  \n  inflating: contents/BIOMD0000000397.png  \n  inflating: contents/BIOMD0000000397.sci  \n  inflating: contents/BIOMD0000000397.svg  \n  inflating: contents/BIOMD0000000397.vcml  \n  inflating: contents/BIOMD0000000397_url.sedml  \n  inflating: contents/BIOMD0000000397_url.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 86.3 KiB/1.8 MiB (971.0 KiB/s) with 16 file(s) remaining\rupload: contents/BIOMD0000000397-biopax3.owl to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397-biopax3.owl\nCompleted 86.3 KiB/1.8 MiB (971.0 KiB/s) with 15 file(s) remaining\rCompleted 342.3 KiB/1.8 MiB (2.7 MiB/s) with 15 file(s) remaining \rCompleted 357.3 KiB/1.8 MiB (2.7 MiB/s) with 15 file(s) remaining \rupload: contents/BIOMD0000000397.sci to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397.sci\nCompleted 357.3 KiB/1.8 MiB (2.7 MiB/s) with 14 file(s) remaining\rCompleted 440.3 KiB/1.8 MiB (3.2 MiB/s) with 14 file(s) remaining\rupload: contents/BIOMD0000000397.svg to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397.svg\nCompleted 440.3 KiB/1.8 MiB (3.2 MiB/s) with 13 file(s) remaining\rCompleted 489.9 KiB/1.8 MiB (3.4 MiB/s) with 13 file(s) remaining\rupload: contents/BIOMD0000000397-biopax2.owl to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397-biopax2.owl\nCompleted 489.9 KiB/1.8 MiB (3.4 MiB/s) with 12 file(s) remaining\rCompleted 491.7 KiB/1.8 MiB (3.3 MiB/s) with 12 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/manifest.xml\nCompleted 491.7 KiB/1.8 MiB (3.3 MiB/s) with 11 file(s) remaining\rCompleted 492.0 KiB/1.8 MiB (3.1 MiB/s) with 11 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/curation_notes.txt\nCompleted 492.0 KiB/1.8 MiB (3.1 MiB/s) with 10 file(s) remaining\rCompleted 510.5 KiB/1.8 MiB (3.2 MiB/s) with 10 file(s) remaining\rupload: contents/BIOMD0000000397-matlab.m to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397-matlab.m\nCompleted 510.5 KiB/1.8 MiB (3.2 MiB/s) with 9 file(s) remaining\rCompleted 766.5 KiB/1.8 MiB (4.5 MiB/s) with 9 file(s) remaining\rCompleted 902.6 KiB/1.8 MiB (5.1 MiB/s) with 9 file(s) remaining\rupload: contents/BIOMD0000000397.vcml to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397.vcml\nCompleted 902.6 KiB/1.8 MiB (5.1 MiB/s) with 8 file(s) remaining\rCompleted 928.1 KiB/1.8 MiB (5.2 MiB/s) with 8 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/curation_image.png\nCompleted 928.1 KiB/1.8 MiB (5.2 MiB/s) with 7 file(s) remaining\rCompleted 1005.6 KiB/1.8 MiB (5.5 MiB/s) with 7 file(s) remaining\rupload: contents/BIOMD0000000397_url.sedml to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397_url.sedml\nCompleted 1005.6 KiB/1.8 MiB (5.5 MiB/s) with 6 file(s) remaining\rCompleted 1.2 MiB/1.8 MiB (7.0 MiB/s) with 6 file(s) remaining   \rCompleted 1.5 MiB/1.8 MiB (8.2 MiB/s) with 6 file(s) remaining   \rCompleted 1.5 MiB/1.8 MiB (7.5 MiB/s) with 6 file(s) remaining   \rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/metadata.rdf\nCompleted 1.5 MiB/1.8 MiB (7.5 MiB/s) with 5 file(s) remaining\rCompleted 1.5 MiB/1.8 MiB (7.2 MiB/s) with 5 file(s) remaining\rupload: contents/BIOMD0000000397.ode to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397.ode\nCompleted 1.5 MiB/1.8 MiB (7.2 MiB/s) with 4 file(s) remaining\rCompleted 1.7 MiB/1.8 MiB (7.9 MiB/s) with 4 file(s) remaining\rupload: contents/BIOMD0000000397_url.xml to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397_url.xml\nCompleted 1.7 MiB/1.8 MiB (7.9 MiB/s) with 3 file(s) remaining\rCompleted 1.7 MiB/1.8 MiB (7.5 MiB/s) with 3 file(s) remaining\rupload: contents/BIOMD0000000397.m to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397.m\nCompleted 1.7 MiB/1.8 MiB (7.5 MiB/s) with 2 file(s) remaining\rCompleted 1.7 MiB/1.8 MiB (6.9 MiB/s) with 2 file(s) remaining\rupload: contents/BIOMD0000000397.png to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397.png\nCompleted 1.7 MiB/1.8 MiB (6.9 MiB/s) with 1 file(s) remaining\rCompleted 1.8 MiB/1.8 MiB (6.8 MiB/s) with 1 file(s) remaining\rupload: contents/BIOMD0000000397.pdf to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/contents/BIOMD0000000397.pdf\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 11.0 KiB/11.0 KiB (112.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6488baa2ee26f4323c8f0fd8/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /BIOMD0000000397_url.sedml\ncreating dataset /BIOMD0000000397_url.sedml/autogen_plot_for_task1, shape: (51, 1001), type: float64\ndataset created, uuid: d-ca36b6bb-f21998ac-2ba0-ad50ee-c04445, chunk_size: (51, 1001)\ncreating dataset /BIOMD0000000397_url.sedml/autogen_report_for_task1, shape: (140, 1001), type: float64\ndataset created, uuid: d-ca36b6bb-f21998ac-586b-a87ed4-ef9ff0, chunk_size: (140, 1001)\ncreating attribute combineArchiveLocation in /BIOMD0000000397_url.sedml\ncreating attribute uri in /BIOMD0000000397_url.sedml\ncreating attribute _type in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetDataTypes in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetIds in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetLabels in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetNames in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetShapes in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlId in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlName in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute uri in /BIOMD0000000397_url.sedml/autogen_plot_for_task1\ncreating attribute _type in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreating attribute uri in /BIOMD0000000397_url.sedml/autogen_report_for_task1\ncreate_links: /\ngot link: BIOMD0000000397_url.sedml\ncreate_links: /BIOMD0000000397_url.sedml\ngot link: autogen_plot_for_task1\ngot link: autogen_report_for_task1\nwrite_dataset src: /BIOMD0000000397_url.sedml/autogen_plot_for_task1 to tgt: /BIOMD0000000397_url.sedml/autogen_plot_for_task1, shape: (51, 1001), type: float64\niterating over chunks for /BIOMD0000000397_url.sedml/autogen_plot_for_task1\nwriting dataset data for slice: (slice(0, 51, 1), slice(0, 1001, 1))\ndone with dataload for /BIOMD0000000397_url.sedml/autogen_plot_for_task1\nwrite_dataset src: /BIOMD0000000397_url.sedml/autogen_report_for_task1 to tgt: /BIOMD0000000397_url.sedml/autogen_report_for_task1, shape: (140, 1001), type: float64\niterating over chunks for /BIOMD0000000397_url.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 140, 1), slice(0, 1001, 1))\ndone with dataload for /BIOMD0000000397_url.sedml/autogen_report_for_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6488baa2ee26f4323c8f0fd8\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":4.020541,"sedDocuments":[{"location":"BIOMD0000000397_url.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n  BIOMD0000000397_url.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 140 data sets\r\n    Plots (1):\r\n      autogen_plot_for_task1: 50 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000397_url.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_plot_for_task1`\r\n      `autogen_report_for_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ...Check SBML support is at action level 2\r\nSBML file is L2V1\r\n\r\n*******************************************************************\r\nIssues encountered in SBML translation (model processed anyway)\r\nSBML source: /tmp/tmpiqgifjyu/BIOMD0000000397_url.xml\r\n*******************************************************************\r\n\r\nFast attribute ignored for reactions:\r\n['r1', 'r5', 'r47', 'r48', 'r54', 'r58', 'r63', 'r66', 'r88', 'r90', 'r91', 'r92', 'r96', 'r98', 'r99', 'r102', 'r103', 'r105', 'r106', 'r107', 'r104', 'r85', 'r65', 'r64', 're65', 're64', 'r67', 'r86'] \r\n\r\n*******************************************************************\r\n\r\nInfo: multiple compartments defined but reaction r68 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r1 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r5 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r47 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r48 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r54 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r58 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r63 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r66 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r88 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r90 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r91 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r92 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r96 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r98 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r99 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r102 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r103 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r105 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r106 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r107 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r104 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r85 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r65 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r64 is not located in any of them.\r\nInfo: multiple compartments defined but reaction re65 is not located in any of them.\r\nInfo: multiple compartments defined but reaction re64 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r67 is not located in any of them.\r\nInfo: multiple compartments defined but reaction r86 is not located in any of them.\r\nWriting file: /tmp/tmp2bcfdbyc.psc\r\n\r\nSBML2PSC\r\nin : /tmp/tmpiqgifjyu/BIOMD0000000397_url.xml\r\nout: /tmp/tmp2bcfdbyc.psc\r\nUsing model directory: /home/FCAM/crbmapi/Pysces/psc\r\n/tmp/tmp2bcfdbyc.psc loading ..... \r\nParsing file: /tmp/tmp2bcfdbyc.psc\r\nInfo: No reagents have been fixed\r\n \r\nCalculating L matrix . . . . . . .  done.\r\nCalculating K matrix . . . . . . . no flux conservation\r\n done.\r\n \r\nCVODE time for 1001 points: 0.3104238510131836\r\n \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_plot_for_task1` ...","duration":3.447503,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":1.532371,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"pysces.PyscesModel.Simulate"},{"key":"arguments","value":{"cvode_abstol":1e-15,"cvode_mxstep":1000,"cvode_reltol":1e-9,"cvode_return_event_timepoints":false,"cvode_stats":false}}]}],"outputs":[{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.772894,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_s5","status":"SUCCEEDED"},{"id":"autogen_task1_s16","status":"SUCCEEDED"},{"id":"autogen_task1_s1","status":"SUCCEEDED"},{"id":"autogen_task1_s27","status":"SUCCEEDED"},{"id":"autogen_task1_s28","status":"SUCCEEDED"},{"id":"autogen_task1_s30","status":"SUCCEEDED"},{"id":"autogen_task1_s31","status":"SUCCEEDED"},{"id":"autogen_task1_s32","status":"SUCCEEDED"},{"id":"autogen_task1_s33","status":"SUCCEEDED"},{"id":"autogen_task1_s37","status":"SUCCEEDED"},{"id":"autogen_task1_s46","status":"SUCCEEDED"},{"id":"autogen_task1_s75","status":"SUCCEEDED"},{"id":"autogen_task1_s101","status":"SUCCEEDED"},{"id":"autogen_task1_s102","status":"SUCCEEDED"},{"id":"autogen_task1_s107","status":"SUCCEEDED"},{"id":"autogen_task1_s121","status":"SUCCEEDED"},{"id":"autogen_task1_s155","status":"SUCCEEDED"},{"id":"autogen_task1_s164","status":"SUCCEEDED"},{"id":"autogen_task1_s171","status":"SUCCEEDED"},{"id":"autogen_task1_s172","status":"SUCCEEDED"},{"id":"autogen_task1_s173","status":"SUCCEEDED"},{"id":"autogen_task1_s170","status":"SUCCEEDED"},{"id":"autogen_task1_s195","status":"SUCCEEDED"},{"id":"autogen_task1_s174","status":"SUCCEEDED"},{"id":"autogen_task1_s239","status":"SUCCEEDED"},{"id":"autogen_task1_s36","status":"SUCCEEDED"},{"id":"autogen_task1_s123","status":"SUCCEEDED"},{"id":"autogen_task1_s129","status":"SUCCEEDED"},{"id":"autogen_task1_s159","status":"SUCCEEDED"},{"id":"autogen_task1_s232","status":"SUCCEEDED"},{"id":"autogen_task1_s176","status":"SUCCEEDED"},{"id":"autogen_task1_s179","status":"SUCCEEDED"},{"id":"autogen_task1_s183","status":"SUCCEEDED"},{"id":"autogen_task1_s188","status":"SUCCEEDED"},{"id":"autogen_task1_s245","status":"SUCCEEDED"},{"id":"autogen_task1_s252","status":"SUCCEEDED"},{"id":"autogen_task1_s268","status":"SUCCEEDED"},{"id":"autogen_task1_s260","status":"SUCCEEDED"},{"id":"autogen_task1_s270","status":"SUCCEEDED"},{"id":"autogen_task1_s275","status":"SUCCEEDED"},{"id":"autogen_task1_s278","status":"SUCCEEDED"},{"id":"autogen_task1_s286","status":"SUCCEEDED"},{"id":"autogen_task1_s288","status":"SUCCEEDED"},{"id":"autogen_task1_s292","status":"SUCCEEDED"},{"id":"autogen_task1_s61","status":"SUCCEEDED"},{"id":"autogen_task1_s259","status":"SUCCEEDED"},{"id":"autogen_task1_s266","status":"SUCCEEDED"},{"id":"autogen_task1_s267","status":"SUCCEEDED"},{"id":"autogen_task1_s304","status":"SUCCEEDED"},{"id":"autogen_task1_s305","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r1","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r1","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r5","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r5","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r47","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r47","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r48","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r48","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r54","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r54","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r58","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r58","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r63","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r63","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r64","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r64","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r65","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r65","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r66","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r66","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r68","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r88","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r88","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r90","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r90","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r91","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r91","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r92","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r92","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r96","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r96","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r98","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r98","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r99","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r99","status":"SUCCEEDED"},{"id":"autogen_task1_kass_r102","status":"SUCCEEDED"},{"id":"autogen_task1_kdiss_r102","status":"SUCCEEDED"},{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