{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    448      0 --:--:-- --:--:-- --:--:--   448\n\r100  276k  100  276k    0     0   631k      0 --:--:-- --:--:-- --:--:--  631k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 5 SED documents:\n  SED documents (5):\n    Succeeded: 5\n    Skipped: 0\n    Failed: 0\n  Tasks (5):\n    Succeeded: 5\n    Skipped: 0\n    Failed: 0\n  Outputs (10):\n    Succeeded: 10\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (24.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/rawLog.txt\nCompleted 19.8 KiB/19.8 KiB (276.2 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 94%)\n  adding: outputs/Baker2017_Fig14.a_2.sedml/ (stored 0%)\n  adding: outputs/Baker2017_Fig14.a_2.sedml/plot_1_task1.pdf (deflated 21%)\n  adding: outputs/Baker2017_Fig14.a_3.sedml/ (stored 0%)\n  adding: outputs/Baker2017_Fig14.a_3.sedml/plot_1_task1.pdf (deflated 21%)\n  adding: outputs/Baker2017_Fig14.b_2.sedml/ (stored 0%)\n  adding: outputs/Baker2017_Fig14.b_2.sedml/plot_1_task1.pdf (deflated 20%)\n  adding: outputs/reports.h5 (deflated 29%)\n  adding: outputs/Baker2017_Fig14.b_1.sedml/ (stored 0%)\n  adding: outputs/Baker2017_Fig14.b_1.sedml/plot_1_task1.pdf (deflated 20%)\n  adding: outputs/Baker2017_Fig14.a_1.sedml/ (stored 0%)\n  adding: outputs/Baker2017_Fig14.a_1.sedml/plot_1_task1.pdf (deflated 21%)\n  adding: rawLog.txt (deflated 71%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/439.2 KiB (6.8 MiB/s) with 1 file(s) remaining\rCompleted 439.2 KiB/439.2 KiB (3.9 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/reports.h5\nCompleted 256.0 KiB/573.5 KiB (4.8 MiB/s) with 8 file(s) remaining\rCompleted 275.5 KiB/573.5 KiB (2.4 MiB/s) with 8 file(s) remaining\rupload: outputs/Baker2017_Fig14.a_1.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/Baker2017_Fig14.a_1.sedml/plot_1_task1.pdf\nCompleted 275.5 KiB/573.5 KiB (2.4 MiB/s) with 7 file(s) remaining\rCompleted 414.3 KiB/573.5 KiB (3.4 MiB/s) with 7 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/output.zip\nCompleted 414.3 KiB/573.5 KiB (3.4 MiB/s) with 6 file(s) remaining\rCompleted 433.6 KiB/573.5 KiB (3.5 MiB/s) with 6 file(s) remaining\rupload: outputs/Baker2017_Fig14.a_2.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/Baker2017_Fig14.a_2.sedml/plot_1_task1.pdf\nCompleted 433.6 KiB/573.5 KiB (3.5 MiB/s) with 5 file(s) remaining\rCompleted 454.0 KiB/573.5 KiB (3.4 MiB/s) with 5 file(s) remaining\rupload: outputs/Baker2017_Fig14.b_1.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/Baker2017_Fig14.b_1.sedml/plot_1_task1.pdf\nCompleted 454.0 KiB/573.5 KiB (3.4 MiB/s) with 4 file(s) remaining\rCompleted 474.3 KiB/573.5 KiB (3.6 MiB/s) with 4 file(s) remaining\rupload: outputs/Baker2017_Fig14.b_2.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/Baker2017_Fig14.b_2.sedml/plot_1_task1.pdf\nCompleted 474.3 KiB/573.5 KiB (3.6 MiB/s) with 3 file(s) remaining\rCompleted 493.5 KiB/573.5 KiB (3.2 MiB/s) with 3 file(s) remaining\rupload: outputs/Baker2017_Fig14.a_3.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/Baker2017_Fig14.a_3.sedml/plot_1_task1.pdf\nCompleted 493.5 KiB/573.5 KiB (3.2 MiB/s) with 2 file(s) remaining\rCompleted 496.7 KiB/573.5 KiB (3.0 MiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/rawLog.txt\nCompleted 496.7 KiB/573.5 KiB (3.0 MiB/s) with 1 file(s) remaining\rCompleted 573.5 KiB/573.5 KiB (3.0 MiB/s) with 1 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/outputs/plots.zip\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/Baker2017_Fig14-biopax2.owl  \n  inflating: contents/Baker2017_Fig14-biopax3.owl  \n  inflating: contents/Baker2017_Fig14-matlab.m  \n  inflating: contents/Baker2017_Fig14-octave.m  \n  inflating: contents/Baker2017_Fig14.a_1.sedml  \n  inflating: contents/Baker2017_Fig14.a_2.sedml  \n  inflating: contents/Baker2017_Fig14.a_3.sedml  \n  inflating: contents/Baker2017_Fig14.b_1.sedml  \n  inflating: contents/Baker2017_Fig14.b_2.sedml  \n  inflating: contents/Baker2017_Fig14.cps  \n  inflating: contents/Baker2017_Fig14.ode  \n  inflating: contents/Baker2017_Fig14.xml  \n  inflating: contents/MODEL1704120000-biopax2.owl  \n  inflating: contents/MODEL1704120000-biopax3.owl  \n  inflating: contents/MODEL1704120000-matlab.m  \n  inflating: contents/MODEL1704120000-octave.m  \n  inflating: contents/MODEL1704120000.m  \n  inflating: contents/MODEL1704120000.ode  \n  inflating: contents/MODEL1704120000.png  \n  inflating: contents/MODEL1704120000.sci  \n  inflating: contents/MODEL1704120000.svg  \n  inflating: contents/MODEL1704120000.vcml  \n  inflating: contents/MODEL1704120000_url.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 20.3 KiB/704.2 KiB (296.6 KiB/s) with 27 file(s) remaining\rupload: contents/Baker2017_Fig14-biopax2.owl to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14-biopax2.owl\nCompleted 20.3 KiB/704.2 KiB (296.6 KiB/s) with 26 file(s) remaining\rCompleted 27.8 KiB/704.2 KiB (239.6 KiB/s) with 26 file(s) remaining\rupload: contents/Baker2017_Fig14-matlab.m to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14-matlab.m\nCompleted 27.8 KiB/704.2 KiB (239.6 KiB/s) with 25 file(s) remaining\rCompleted 59.8 KiB/704.2 KiB (480.4 KiB/s) with 25 file(s) remaining\rupload: contents/Baker2017_Fig14-biopax3.owl to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14-biopax3.owl\nCompleted 59.8 KiB/704.2 KiB (480.4 KiB/s) with 24 file(s) remaining\rCompleted 64.7 KiB/704.2 KiB (510.3 KiB/s) with 24 file(s) remaining\rupload: contents/MODEL1704120000-matlab.m to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000-matlab.m\nCompleted 64.7 KiB/704.2 KiB (510.3 KiB/s) with 23 file(s) remaining\rCompleted 82.3 KiB/704.2 KiB (621.5 KiB/s) with 23 file(s) remaining\rupload: contents/Baker2017_Fig14.b_1.sedml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.b_1.sedml\nCompleted 82.3 KiB/704.2 KiB (621.5 KiB/s) with 22 file(s) remaining\rCompleted 100.0 KiB/704.2 KiB (683.1 KiB/s) with 22 file(s) remaining\rupload: contents/Baker2017_Fig14.b_2.sedml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.b_2.sedml\nCompleted 100.0 KiB/704.2 KiB (683.1 KiB/s) with 21 file(s) remaining\rCompleted 105.5 KiB/704.2 KiB (717.3 KiB/s) with 21 file(s) remaining\rupload: contents/Baker2017_Fig14.ode to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.ode\nCompleted 105.5 KiB/704.2 KiB (717.3 KiB/s) with 20 file(s) remaining\rCompleted 204.7 KiB/704.2 KiB (1.3 MiB/s) with 20 file(s) remaining  \rupload: contents/Baker2017_Fig14.cps to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.cps\nCompleted 204.7 KiB/704.2 KiB (1.3 MiB/s) with 19 file(s) remaining\rCompleted 220.1 KiB/704.2 KiB (1.3 MiB/s) with 19 file(s) remaining\rupload: contents/MODEL1704120000-biopax2.owl to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000-biopax2.owl\nCompleted 220.1 KiB/704.2 KiB (1.3 MiB/s) with 18 file(s) remaining\rCompleted 247.1 KiB/704.2 KiB (1.4 MiB/s) with 18 file(s) remaining\rupload: contents/MODEL1704120000-biopax3.owl to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000-biopax3.owl\nCompleted 247.1 KiB/704.2 KiB (1.4 MiB/s) with 17 file(s) remaining\rCompleted 252.1 KiB/704.2 KiB (1.2 MiB/s) with 17 file(s) remaining\rupload: contents/MODEL1704120000-octave.m to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000-octave.m\nCompleted 252.1 KiB/704.2 KiB (1.2 MiB/s) with 16 file(s) remaining\rCompleted 331.6 KiB/704.2 KiB (1.6 MiB/s) with 16 file(s) remaining\rupload: contents/MODEL1704120000.png to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000.png\nCompleted 331.6 KiB/704.2 KiB (1.6 MiB/s) with 15 file(s) remaining\rCompleted 336.6 KiB/704.2 KiB (1.6 MiB/s) with 15 file(s) remaining\rupload: contents/MODEL1704120000.m to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000.m\nCompleted 336.6 KiB/704.2 KiB (1.6 MiB/s) with 14 file(s) remaining\rCompleted 337.0 KiB/704.2 KiB (1.6 MiB/s) with 14 file(s) remaining\rupload: contents/MODEL1704120000.sci to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000.sci\nCompleted 337.0 KiB/704.2 KiB (1.6 MiB/s) with 13 file(s) remaining\rCompleted 413.4 KiB/704.2 KiB (1.9 MiB/s) with 13 file(s) remaining\rupload: contents/Baker2017_Fig14.xml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.xml\nCompleted 413.4 KiB/704.2 KiB (1.9 MiB/s) with 12 file(s) remaining\rCompleted 437.6 KiB/704.2 KiB (2.0 MiB/s) with 12 file(s) remaining\rupload: contents/MODEL1704120000.vcml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000.vcml\nCompleted 437.6 KiB/704.2 KiB (2.0 MiB/s) with 11 file(s) remaining\rCompleted 440.6 KiB/704.2 KiB (2.0 MiB/s) with 11 file(s) remaining\rupload: contents/MODEL1704120000.ode to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000.ode\nCompleted 440.6 KiB/704.2 KiB (2.0 MiB/s) with 10 file(s) remaining\rCompleted 460.4 KiB/704.2 KiB (2.0 MiB/s) with 10 file(s) remaining\rupload: contents/MODEL1704120000_url.xml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000_url.xml\nCompleted 460.4 KiB/704.2 KiB (2.0 MiB/s) with 9 file(s) remaining\rCompleted 483.9 KiB/704.2 KiB (2.0 MiB/s) with 9 file(s) remaining\rupload: contents/MODEL1704120000.svg to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/MODEL1704120000.svg\nCompleted 483.9 KiB/704.2 KiB (2.0 MiB/s) with 8 file(s) remaining\rCompleted 638.4 KiB/704.2 KiB (2.6 MiB/s) with 8 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/curation_image.png\nCompleted 638.4 KiB/704.2 KiB (2.6 MiB/s) with 7 file(s) remaining\rCompleted 638.6 KiB/704.2 KiB (2.4 MiB/s) with 7 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/curation_notes.txt\nCompleted 638.6 KiB/704.2 KiB (2.4 MiB/s) with 6 file(s) remaining\rCompleted 641.8 KiB/704.2 KiB (2.3 MiB/s) with 6 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/manifest.xml\nCompleted 641.8 KiB/704.2 KiB (2.3 MiB/s) with 5 file(s) remaining\rCompleted 659.9 KiB/704.2 KiB (2.4 MiB/s) with 5 file(s) remaining\rupload: contents/Baker2017_Fig14.a_1.sedml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.a_1.sedml\nCompleted 659.9 KiB/704.2 KiB (2.4 MiB/s) with 4 file(s) remaining\rCompleted 661.4 KiB/704.2 KiB (2.4 MiB/s) with 4 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/metadata.rdf\nCompleted 661.4 KiB/704.2 KiB (2.4 MiB/s) with 3 file(s) remaining\rCompleted 679.1 KiB/704.2 KiB (2.4 MiB/s) with 3 file(s) remaining\rupload: contents/Baker2017_Fig14.a_3.sedml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.a_3.sedml\nCompleted 679.1 KiB/704.2 KiB (2.4 MiB/s) with 2 file(s) remaining\rCompleted 686.5 KiB/704.2 KiB (2.4 MiB/s) with 2 file(s) remaining\rupload: contents/Baker2017_Fig14-octave.m to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14-octave.m\nCompleted 686.5 KiB/704.2 KiB (2.4 MiB/s) with 1 file(s) remaining\rCompleted 704.2 KiB/704.2 KiB (2.4 MiB/s) with 1 file(s) remaining\rupload: contents/Baker2017_Fig14.a_2.sedml to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/contents/Baker2017_Fig14.a_2.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 14.3 KiB/14.3 KiB (199.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6480c751321246e8866e1640/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /Baker2017_Fig14.a_1.sedml\ncreating dataset /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1, shape: (33, 386), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-97f5-9d0dbe-248a9f, chunk_size: (33, 386)\ncreating dataset /Baker2017_Fig14.a_1.sedml/plot_1_task1, shape: (4, 386), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-4185-e190a2-5bc24c, chunk_size: (4, 386)\ncreating group /Baker2017_Fig14.a_2.sedml\ncreating dataset /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1, shape: (33, 501), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-e9bc-54c522-19b6d3, chunk_size: (33, 501)\ncreating dataset /Baker2017_Fig14.a_2.sedml/plot_1_task1, shape: (4, 501), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-be1d-c27a2c-fb59c6, chunk_size: (4, 501)\ncreating group /Baker2017_Fig14.a_3.sedml\ncreating dataset /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1, shape: (33, 376), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-7499-fb8f5c-35f9ba, chunk_size: (33, 376)\ncreating dataset /Baker2017_Fig14.a_3.sedml/plot_1_task1, shape: (4, 376), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-fed5-ec90a3-f8f9c8, chunk_size: (4, 376)\ncreating group /Baker2017_Fig14.b_1.sedml\ncreating dataset /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1, shape: (33, 501), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-380a-9c9071-1defad, chunk_size: (33, 501)\ncreating dataset /Baker2017_Fig14.b_1.sedml/plot_1_task1, shape: (4, 501), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-052d-f74bf1-f9daa7, chunk_size: (4, 501)\ncreating group /Baker2017_Fig14.b_2.sedml\ncreating dataset /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1, shape: (33, 501), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-1127-f12a3d-dc970b, chunk_size: (33, 501)\ncreating dataset /Baker2017_Fig14.b_2.sedml/plot_1_task1, shape: (4, 501), type: float64\ndataset created, uuid: d-7b6940df-b52741a3-f882-4ac769-913380, chunk_size: (4, 501)\ncreating attribute combineArchiveLocation in /Baker2017_Fig14.a_1.sedml\ncreating attribute uri in /Baker2017_Fig14.a_1.sedml\ncreating attribute _type in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute uri in /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\ncreating attribute _type in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute sedmlId in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute sedmlName in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute uri in /Baker2017_Fig14.a_1.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Baker2017_Fig14.a_2.sedml\ncreating attribute uri in /Baker2017_Fig14.a_2.sedml\ncreating attribute _type in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute uri in /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\ncreating attribute _type in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute sedmlId in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute sedmlName in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute uri in /Baker2017_Fig14.a_2.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Baker2017_Fig14.a_3.sedml\ncreating attribute uri in /Baker2017_Fig14.a_3.sedml\ncreating attribute _type in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute uri in /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\ncreating attribute _type in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute sedmlId in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute sedmlName in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute uri in /Baker2017_Fig14.a_3.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Baker2017_Fig14.b_1.sedml\ncreating attribute uri in /Baker2017_Fig14.b_1.sedml\ncreating attribute _type in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute uri in /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\ncreating attribute _type in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute sedmlId in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute sedmlName in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute uri in /Baker2017_Fig14.b_1.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Baker2017_Fig14.b_2.sedml\ncreating attribute uri in /Baker2017_Fig14.b_2.sedml\ncreating attribute _type in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute uri in /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\ncreating attribute _type in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute sedmlId in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute sedmlName in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreating attribute uri in /Baker2017_Fig14.b_2.sedml/plot_1_task1\ncreate_links: /\ngot link: Baker2017_Fig14.a_1.sedml\ngot link: Baker2017_Fig14.a_2.sedml\ngot link: Baker2017_Fig14.a_3.sedml\ngot link: Baker2017_Fig14.b_1.sedml\ngot link: Baker2017_Fig14.b_2.sedml\ncreate_links: /Baker2017_Fig14.a_1.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Baker2017_Fig14.a_2.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Baker2017_Fig14.a_3.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Baker2017_Fig14.b_1.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Baker2017_Fig14.b_2.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\nwrite_dataset src: /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1 to tgt: /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1, shape: (33, 386), type: float64\niterating over chunks for /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 33, 1), slice(0, 386, 1))\ndone with dataload for /Baker2017_Fig14.a_1.sedml/autogen_report_for_task1\nwrite_dataset src: /Baker2017_Fig14.a_1.sedml/plot_1_task1 to tgt: /Baker2017_Fig14.a_1.sedml/plot_1_task1, shape: (4, 386), type: float64\niterating over chunks for /Baker2017_Fig14.a_1.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 386, 1))\ndone with dataload for /Baker2017_Fig14.a_1.sedml/plot_1_task1\nwrite_dataset src: /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1 to tgt: /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1, shape: (33, 501), type: float64\niterating over chunks for /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 33, 1), slice(0, 501, 1))\ndone with dataload for /Baker2017_Fig14.a_2.sedml/autogen_report_for_task1\nwrite_dataset src: /Baker2017_Fig14.a_2.sedml/plot_1_task1 to tgt: /Baker2017_Fig14.a_2.sedml/plot_1_task1, shape: (4, 501), type: float64\niterating over chunks for /Baker2017_Fig14.a_2.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 501, 1))\ndone with dataload for /Baker2017_Fig14.a_2.sedml/plot_1_task1\nwrite_dataset src: /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1 to tgt: /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1, shape: (33, 376), type: float64\niterating over chunks for /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 33, 1), slice(0, 376, 1))\ndone with dataload for /Baker2017_Fig14.a_3.sedml/autogen_report_for_task1\nwrite_dataset src: /Baker2017_Fig14.a_3.sedml/plot_1_task1 to tgt: /Baker2017_Fig14.a_3.sedml/plot_1_task1, shape: (4, 376), type: float64\niterating over chunks for /Baker2017_Fig14.a_3.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 376, 1))\ndone with dataload for /Baker2017_Fig14.a_3.sedml/plot_1_task1\nwrite_dataset src: /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1 to tgt: /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1, shape: (33, 501), type: float64\niterating over chunks for /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 33, 1), slice(0, 501, 1))\ndone with dataload for /Baker2017_Fig14.b_1.sedml/autogen_report_for_task1\nwrite_dataset src: /Baker2017_Fig14.b_1.sedml/plot_1_task1 to tgt: /Baker2017_Fig14.b_1.sedml/plot_1_task1, shape: (4, 501), type: float64\niterating over chunks for /Baker2017_Fig14.b_1.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 501, 1))\ndone with dataload for /Baker2017_Fig14.b_1.sedml/plot_1_task1\nwrite_dataset src: /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1 to tgt: /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1, shape: (33, 501), type: float64\niterating over chunks for /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 33, 1), slice(0, 501, 1))\ndone with dataload for /Baker2017_Fig14.b_2.sedml/autogen_report_for_task1\nwrite_dataset src: /Baker2017_Fig14.b_2.sedml/plot_1_task1 to tgt: /Baker2017_Fig14.b_2.sedml/plot_1_task1, shape: (4, 501), type: float64\niterating over chunks for /Baker2017_Fig14.b_2.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 501, 1))\ndone with dataload for /Baker2017_Fig14.b_2.sedml/plot_1_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6480c751321246e8866e1640\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":5.117875,"sedDocuments":[{"location":"Baker2017_Fig14.a_1.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 5 SED-ML documents with 5 models, 5 simulations, 5 tasks, 5 reports, and 5 plots:\r\n  Baker2017_Fig14.a_1.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 33 data sets\r\n    Plots (1):\r\n      plot_1_task1: 3 curves\r\n  Baker2017_Fig14.a_2.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 33 data sets\r\n    Plots (1):\r\n      plot_1_task1: 3 curves\r\n  Baker2017_Fig14.a_3.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 33 data sets\r\n    Plots (1):\r\n      plot_1_task1: 3 curves\r\n  Baker2017_Fig14.b_1.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 33 data sets\r\n    Plots (1):\r\n      plot_1_task1: 3 curves\r\n  Baker2017_Fig14.b_2.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 33 data sets\r\n    Plots (1):\r\n      plot_1_task1: 3 curves\r\n\r\nExecuting SED-ML file 1: Baker2017_Fig14.a_1.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.926486,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.22533,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.350909,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.135677,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_solution3","status":"SUCCEEDED"},{"id":"autogen_task1_solution2","status":"SUCCEEDED"},{"id":"autogen_task1_solution0","status":"SUCCEEDED"},{"id":"autogen_task1_solution1","status":"SUCCEEDED"},{"id":"autogen_task1_Afh","status":"SUCCEEDED"},{"id":"autogen_task1_Afp","status":"SUCCEEDED"},{"id":"autogen_task1_Aph","status":"SUCCEEDED"},{"id":"autogen_task1_App","status":"SUCCEEDED"},{"id":"autogen_task1_Fdam","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_f","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_m","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_p","status":"SUCCEEDED"},{"id":"autogen_task1_Mbp","status":"SUCCEEDED"},{"id":"autogen_task1_Mph","status":"SUCCEEDED"},{"id":"autogen_task1_Mpp","status":"SUCCEEDED"},{"id":"autogen_task1_Pbp","status":"SUCCEEDED"},{"id":"autogen_task1_Pfp","status":"SUCCEEDED"},{"id":"autogen_task1_Ppp","status":"SUCCEEDED"},{"id":"autogen_task1_compartmentOne","status":"SUCCEEDED"},{"id":"autogen_task1_R_1","status":"SUCCEEDED"},{"id":"autogen_task1_R_2","status":"SUCCEEDED"},{"id":"autogen_task1_R_3","status":"SUCCEEDED"},{"id":"autogen_task1_R_4","status":"SUCCEEDED"},{"id":"autogen_task1_R_5","status":"SUCCEEDED"},{"id":"autogen_task1_R_6","status":"SUCCEEDED"},{"id":"autogen_task1_R_7","status":"SUCCEEDED"},{"id":"autogen_task1_R_8","status":"SUCCEEDED"},{"id":"autogen_task1_R_9","status":"SUCCEEDED"},{"id":"autogen_task1_R_10","status":"SUCCEEDED"},{"id":"autogen_task1_R_11","status":"SUCCEEDED"},{"id":"autogen_task1_R_12","status":"SUCCEEDED"},{"id":"autogen_task1_R_13","status":"SUCCEEDED"}]}]},{"location":"Baker2017_Fig14.a_2.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: Baker2017_Fig14.a_2.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.708162,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.126083,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.18626,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.164025,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_solution3","status":"SUCCEEDED"},{"id":"autogen_task1_solution2","status":"SUCCEEDED"},{"id":"autogen_task1_solution0","status":"SUCCEEDED"},{"id":"autogen_task1_solution1","status":"SUCCEEDED"},{"id":"autogen_task1_Afh","status":"SUCCEEDED"},{"id":"autogen_task1_Afp","status":"SUCCEEDED"},{"id":"autogen_task1_Aph","status":"SUCCEEDED"},{"id":"autogen_task1_App","status":"SUCCEEDED"},{"id":"autogen_task1_Fdam","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_f","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_m","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_p","status":"SUCCEEDED"},{"id":"autogen_task1_Mbp","status":"SUCCEEDED"},{"id":"autogen_task1_Mph","status":"SUCCEEDED"},{"id":"autogen_task1_Mpp","status":"SUCCEEDED"},{"id":"autogen_task1_Pbp","status":"SUCCEEDED"},{"id":"autogen_task1_Pfp","status":"SUCCEEDED"},{"id":"autogen_task1_Ppp","status":"SUCCEEDED"},{"id":"autogen_task1_compartmentOne","status":"SUCCEEDED"},{"id":"autogen_task1_R_1","status":"SUCCEEDED"},{"id":"autogen_task1_R_2","status":"SUCCEEDED"},{"id":"autogen_task1_R_3","status":"SUCCEEDED"},{"id":"autogen_task1_R_4","status":"SUCCEEDED"},{"id":"autogen_task1_R_5","status":"SUCCEEDED"},{"id":"autogen_task1_R_6","status":"SUCCEEDED"},{"id":"autogen_task1_R_7","status":"SUCCEEDED"},{"id":"autogen_task1_R_8","status":"SUCCEEDED"},{"id":"autogen_task1_R_9","status":"SUCCEEDED"},{"id":"autogen_task1_R_10","status":"SUCCEEDED"},{"id":"autogen_task1_R_11","status":"SUCCEEDED"},{"id":"autogen_task1_R_12","status":"SUCCEEDED"},{"id":"autogen_task1_R_13","status":"SUCCEEDED"}]}]},{"location":"Baker2017_Fig14.a_3.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 3: Baker2017_Fig14.a_3.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.680213,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.125648,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.16934,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.139738,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_solution3","status":"SUCCEEDED"},{"id":"autogen_task1_solution2","status":"SUCCEEDED"},{"id":"autogen_task1_solution0","status":"SUCCEEDED"},{"id":"autogen_task1_solution1","status":"SUCCEEDED"},{"id":"autogen_task1_Afh","status":"SUCCEEDED"},{"id":"autogen_task1_Afp","status":"SUCCEEDED"},{"id":"autogen_task1_Aph","status":"SUCCEEDED"},{"id":"autogen_task1_App","status":"SUCCEEDED"},{"id":"autogen_task1_Fdam","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_f","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_m","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_p","status":"SUCCEEDED"},{"id":"autogen_task1_Mbp","status":"SUCCEEDED"},{"id":"autogen_task1_Mph","status":"SUCCEEDED"},{"id":"autogen_task1_Mpp","status":"SUCCEEDED"},{"id":"autogen_task1_Pbp","status":"SUCCEEDED"},{"id":"autogen_task1_Pfp","status":"SUCCEEDED"},{"id":"autogen_task1_Ppp","status":"SUCCEEDED"},{"id":"autogen_task1_compartmentOne","status":"SUCCEEDED"},{"id":"autogen_task1_R_1","status":"SUCCEEDED"},{"id":"autogen_task1_R_2","status":"SUCCEEDED"},{"id":"autogen_task1_R_3","status":"SUCCEEDED"},{"id":"autogen_task1_R_4","status":"SUCCEEDED"},{"id":"autogen_task1_R_5","status":"SUCCEEDED"},{"id":"autogen_task1_R_6","status":"SUCCEEDED"},{"id":"autogen_task1_R_7","status":"SUCCEEDED"},{"id":"autogen_task1_R_8","status":"SUCCEEDED"},{"id":"autogen_task1_R_9","status":"SUCCEEDED"},{"id":"autogen_task1_R_10","status":"SUCCEEDED"},{"id":"autogen_task1_R_11","status":"SUCCEEDED"},{"id":"autogen_task1_R_12","status":"SUCCEEDED"},{"id":"autogen_task1_R_13","status":"SUCCEEDED"}]}]},{"location":"Baker2017_Fig14.b_1.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 4: Baker2017_Fig14.b_1.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.744719,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.127142,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.186106,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.166527,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_solution3","status":"SUCCEEDED"},{"id":"autogen_task1_solution2","status":"SUCCEEDED"},{"id":"autogen_task1_solution0","status":"SUCCEEDED"},{"id":"autogen_task1_solution1","status":"SUCCEEDED"},{"id":"autogen_task1_Afh","status":"SUCCEEDED"},{"id":"autogen_task1_Afp","status":"SUCCEEDED"},{"id":"autogen_task1_Aph","status":"SUCCEEDED"},{"id":"autogen_task1_App","status":"SUCCEEDED"},{"id":"autogen_task1_Fdam","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_f","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_m","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_p","status":"SUCCEEDED"},{"id":"autogen_task1_Mbp","status":"SUCCEEDED"},{"id":"autogen_task1_Mph","status":"SUCCEEDED"},{"id":"autogen_task1_Mpp","status":"SUCCEEDED"},{"id":"autogen_task1_Pbp","status":"SUCCEEDED"},{"id":"autogen_task1_Pfp","status":"SUCCEEDED"},{"id":"autogen_task1_Ppp","status":"SUCCEEDED"},{"id":"autogen_task1_compartmentOne","status":"SUCCEEDED"},{"id":"autogen_task1_R_1","status":"SUCCEEDED"},{"id":"autogen_task1_R_2","status":"SUCCEEDED"},{"id":"autogen_task1_R_3","status":"SUCCEEDED"},{"id":"autogen_task1_R_4","status":"SUCCEEDED"},{"id":"autogen_task1_R_5","status":"SUCCEEDED"},{"id":"autogen_task1_R_6","status":"SUCCEEDED"},{"id":"autogen_task1_R_7","status":"SUCCEEDED"},{"id":"autogen_task1_R_8","status":"SUCCEEDED"},{"id":"autogen_task1_R_9","status":"SUCCEEDED"},{"id":"autogen_task1_R_10","status":"SUCCEEDED"},{"id":"autogen_task1_R_11","status":"SUCCEEDED"},{"id":"autogen_task1_R_12","status":"SUCCEEDED"},{"id":"autogen_task1_R_13","status":"SUCCEEDED"}]}]},{"location":"Baker2017_Fig14.b_2.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 5: Baker2017_Fig14.b_2.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.754407,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.126543,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.17371,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.18459,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_solution3","status":"SUCCEEDED"},{"id":"autogen_task1_solution2","status":"SUCCEEDED"},{"id":"autogen_task1_solution0","status":"SUCCEEDED"},{"id":"autogen_task1_solution1","status":"SUCCEEDED"},{"id":"autogen_task1_Afh","status":"SUCCEEDED"},{"id":"autogen_task1_Afp","status":"SUCCEEDED"},{"id":"autogen_task1_Aph","status":"SUCCEEDED"},{"id":"autogen_task1_App","status":"SUCCEEDED"},{"id":"autogen_task1_Fdam","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_f","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_m","status":"SUCCEEDED"},{"id":"autogen_task1_Gamma_p","status":"SUCCEEDED"},{"id":"autogen_task1_Mbp","status":"SUCCEEDED"},{"id":"autogen_task1_Mph","status":"SUCCEEDED"},{"id":"autogen_task1_Mpp","status":"SUCCEEDED"},{"id":"autogen_task1_Pbp","status":"SUCCEEDED"},{"id":"autogen_task1_Pfp","status":"SUCCEEDED"},{"id":"autogen_task1_Ppp","status":"SUCCEEDED"},{"id":"autogen_task1_compartmentOne","status":"SUCCEEDED"},{"id":"autogen_task1_R_1","status":"SUCCEEDED"},{"id":"autogen_task1_R_2","status":"SUCCEEDED"},{"id":"autogen_task1_R_3","status":"SUCCEEDED"},{"id":"autogen_task1_R_4","status":"SUCCEEDED"},{"id":"autogen_task1_R_5","status":"SUCCEEDED"},{"id":"autogen_task1_R_6","status":"SUCCEEDED"},{"id":"autogen_task1_R_7","status":"SUCCEEDED"},{"id":"autogen_task1_R_8","status":"SUCCEEDED"},{"id":"autogen_task1_R_9","status":"SUCCEEDED"},{"id":"autogen_task1_R_10","status":"SUCCEEDED"},{"id":"autogen_task1_R_11","status":"SUCCEEDED"},{"id":"autogen_task1_R_12","status":"SUCCEEDED"},{"id":"autogen_task1_R_13","status":"SUCCEEDED"}]}]}]}