{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    478      0 --:--:-- --:--:-- --:--:--   479\n\r100  418k  100  418k    0     0   977k      0 --:--:-- --:--:-- --:--:--  977k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 9 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 9\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (9):\n    Succeeded: 9\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (18.4 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/rawLog.txt\nCompleted 7.4 KiB/7.4 KiB (99.3 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 84%)\n  adding: outputs/FatehiChenar2018.sedml/ (stored 0%)\n  adding: outputs/FatehiChenar2018.sedml/plot_3_task1.pdf (deflated 35%)\n  adding: outputs/FatehiChenar2018.sedml/plot_2_task1.pdf (deflated 37%)\n  adding: outputs/FatehiChenar2018.sedml/plot_4_task1.pdf (deflated 34%)\n  adding: outputs/FatehiChenar2018.sedml/plot_7_task1.pdf (deflated 33%)\n  adding: outputs/FatehiChenar2018.sedml/plot_5_task1.pdf (deflated 34%)\n  adding: outputs/FatehiChenar2018.sedml/plot_8_task1.pdf (deflated 33%)\n  adding: outputs/FatehiChenar2018.sedml/plot_1_task1.pdf (deflated 34%)\n  adding: outputs/FatehiChenar2018.sedml/plot_6_task1.pdf (deflated 33%)\n  adding: outputs/reports.h5 (deflated 28%)\n  adding: rawLog.txt (deflated 71%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/391.4 KiB (5.9 MiB/s) with 1 file(s) remaining\rCompleted 391.4 KiB/391.4 KiB (2.8 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/reports.h5\nCompleted 256.0 KiB/444.5 KiB (4.3 MiB/s) with 11 file(s) remaining\rCompleted 263.4 KiB/444.5 KiB (1.9 MiB/s) with 11 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_2_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_2_task1.pdf\nCompleted 263.4 KiB/444.5 KiB (1.9 MiB/s) with 10 file(s) remaining\rCompleted 338.3 KiB/444.5 KiB (2.4 MiB/s) with 10 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/output.zip\nCompleted 338.3 KiB/444.5 KiB (2.4 MiB/s) with 9 file(s) remaining\rCompleted 341.4 KiB/444.5 KiB (2.1 MiB/s) with 9 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/rawLog.txt\nCompleted 341.4 KiB/444.5 KiB (2.1 MiB/s) with 8 file(s) remaining\rCompleted 349.7 KiB/444.5 KiB (2.0 MiB/s) with 8 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_1_task1.pdf\nCompleted 349.7 KiB/444.5 KiB (2.0 MiB/s) with 7 file(s) remaining\rCompleted 358.3 KiB/444.5 KiB (2.1 MiB/s) with 7 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_7_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_7_task1.pdf\nCompleted 358.3 KiB/444.5 KiB (2.1 MiB/s) with 6 file(s) remaining\rCompleted 367.1 KiB/444.5 KiB (2.1 MiB/s) with 6 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_3_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_3_task1.pdf\nCompleted 367.1 KiB/444.5 KiB (2.1 MiB/s) with 5 file(s) remaining\rCompleted 375.8 KiB/444.5 KiB (2.1 MiB/s) with 5 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_4_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_4_task1.pdf\nCompleted 375.8 KiB/444.5 KiB (2.1 MiB/s) with 4 file(s) remaining\rCompleted 418.9 KiB/444.5 KiB (2.0 MiB/s) with 4 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/plots.zip\nCompleted 418.9 KiB/444.5 KiB (2.0 MiB/s) with 3 file(s) remaining\rCompleted 426.6 KiB/444.5 KiB (2.0 MiB/s) with 3 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_5_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_5_task1.pdf\nCompleted 426.6 KiB/444.5 KiB (2.0 MiB/s) with 2 file(s) remaining\rCompleted 435.9 KiB/444.5 KiB (1.9 MiB/s) with 2 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_8_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_8_task1.pdf\nCompleted 435.9 KiB/444.5 KiB (1.9 MiB/s) with 1 file(s) remaining\rCompleted 444.5 KiB/444.5 KiB (1.9 MiB/s) with 1 file(s) remaining\rupload: outputs/FatehiChenar2018.sedml/plot_6_task1.pdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/outputs/FatehiChenar2018.sedml/plot_6_task1.pdf\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/FatehiChenar2018-biopax2.owl  \n  inflating: contents/FatehiChenar2018-biopax3.owl  \n  inflating: contents/FatehiChenar2018-matlab.m  \n  inflating: contents/FatehiChenar2018-octave.m  \n  inflating: contents/FatehiChenar2018.cps  \n  inflating: contents/FatehiChenar2018.ode  \n  inflating: contents/FatehiChenar2018.sedml  \n  inflating: contents/FatehiChenar2018.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 28.7 KiB/923.2 KiB (360.9 KiB/s) with 12 file(s) remaining\rupload: contents/FatehiChenar2018-biopax2.owl to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018-biopax2.owl\nCompleted 28.7 KiB/923.2 KiB (360.9 KiB/s) with 11 file(s) remaining\rCompleted 284.7 KiB/923.2 KiB (2.4 MiB/s) with 11 file(s) remaining \rCompleted 540.7 KiB/923.2 KiB (4.3 MiB/s) with 11 file(s) remaining \rCompleted 551.8 KiB/923.2 KiB (3.8 MiB/s) with 11 file(s) remaining \rupload: contents/FatehiChenar2018-octave.m to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018-octave.m\nCompleted 551.8 KiB/923.2 KiB (3.8 MiB/s) with 10 file(s) remaining\rCompleted 635.4 KiB/923.2 KiB (4.2 MiB/s) with 10 file(s) remaining\rupload: contents/FatehiChenar2018.xml to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018.xml\nCompleted 635.4 KiB/923.2 KiB (4.2 MiB/s) with 9 file(s) remaining\rCompleted 635.6 KiB/923.2 KiB (4.0 MiB/s) with 9 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/curation_notes.txt\nCompleted 635.6 KiB/923.2 KiB (4.0 MiB/s) with 8 file(s) remaining\rCompleted 646.7 KiB/923.2 KiB (4.0 MiB/s) with 8 file(s) remaining\rupload: contents/FatehiChenar2018-matlab.m to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018-matlab.m\nCompleted 646.7 KiB/923.2 KiB (4.0 MiB/s) with 7 file(s) remaining\rCompleted 681.2 KiB/923.2 KiB (4.0 MiB/s) with 7 file(s) remaining\rupload: contents/FatehiChenar2018.sedml to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018.sedml\nCompleted 681.2 KiB/923.2 KiB (4.0 MiB/s) with 6 file(s) remaining\rCompleted 804.5 KiB/923.2 KiB (4.3 MiB/s) with 6 file(s) remaining\rupload: contents/FatehiChenar2018.cps to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018.cps\nCompleted 804.5 KiB/923.2 KiB (4.3 MiB/s) with 5 file(s) remaining\rCompleted 807.7 KiB/923.2 KiB (4.2 MiB/s) with 5 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/metadata.rdf\nCompleted 807.7 KiB/923.2 KiB (4.2 MiB/s) with 4 file(s) remaining\rCompleted 871.7 KiB/923.2 KiB (4.4 MiB/s) with 4 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/curation_image.png\nCompleted 871.7 KiB/923.2 KiB (4.4 MiB/s) with 3 file(s) remaining\rCompleted 873.1 KiB/923.2 KiB (4.3 MiB/s) with 3 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/manifest.xml\nCompleted 873.1 KiB/923.2 KiB (4.3 MiB/s) with 2 file(s) remaining\rCompleted 881.5 KiB/923.2 KiB (4.1 MiB/s) with 2 file(s) remaining\rupload: contents/FatehiChenar2018.ode to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018.ode\nCompleted 881.5 KiB/923.2 KiB (4.1 MiB/s) with 1 file(s) remaining\rCompleted 923.2 KiB/923.2 KiB (3.6 MiB/s) with 1 file(s) remaining\rupload: contents/FatehiChenar2018-biopax3.owl to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/contents/FatehiChenar2018-biopax3.owl\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 10.4 KiB/10.4 KiB (101.4 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a618d77b6669655064b4b/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /FatehiChenar2018.sedml\ncreating dataset /FatehiChenar2018.sedml/autogen_report_for_task1, shape: (60, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-78c5-838c76-591356, chunk_size: (60, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_1_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-acb9-0674f4-edfa8c, chunk_size: (2, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_2_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-9aa9-1912ac-b0ee1d, chunk_size: (2, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_3_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-814f-05aa12-a1ed88, chunk_size: (2, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_4_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-9f32-f6c858-c013bb, chunk_size: (2, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_5_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-b444-dc324e-f5f90c, chunk_size: (2, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_6_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-046b-196e86-8cd185, chunk_size: (2, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_7_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-9109-b2dd5d-ffe48c, chunk_size: (2, 1001)\ncreating dataset /FatehiChenar2018.sedml/plot_8_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-9e0a807d-1bbd7362-7a63-558d9f-63ca34, chunk_size: (2, 1001)\ncreating attribute combineArchiveLocation in /FatehiChenar2018.sedml\ncreating attribute uri in /FatehiChenar2018.sedml\ncreating attribute _type in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute uri in /FatehiChenar2018.sedml/autogen_report_for_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_1_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_2_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_3_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_4_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_5_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_6_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_7_task1\ncreating attribute _type in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute sedmlDataSetDataTypes in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute sedmlDataSetIds in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute sedmlDataSetLabels in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute sedmlDataSetNames in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute sedmlDataSetShapes in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute sedmlId in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute sedmlName in /FatehiChenar2018.sedml/plot_8_task1\ncreating attribute uri in /FatehiChenar2018.sedml/plot_8_task1\ncreate_links: /\ngot link: FatehiChenar2018.sedml\ncreate_links: /FatehiChenar2018.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ngot link: plot_2_task1\ngot link: plot_3_task1\ngot link: plot_4_task1\ngot link: plot_5_task1\ngot link: plot_6_task1\ngot link: plot_7_task1\ngot link: plot_8_task1\nwrite_dataset src: /FatehiChenar2018.sedml/autogen_report_for_task1 to tgt: /FatehiChenar2018.sedml/autogen_report_for_task1, shape: (60, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 60, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/autogen_report_for_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_1_task1 to tgt: /FatehiChenar2018.sedml/plot_1_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_1_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_2_task1 to tgt: /FatehiChenar2018.sedml/plot_2_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_2_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_2_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_3_task1 to tgt: /FatehiChenar2018.sedml/plot_3_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_3_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_3_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_4_task1 to tgt: /FatehiChenar2018.sedml/plot_4_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_4_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_4_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_5_task1 to tgt: /FatehiChenar2018.sedml/plot_5_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_5_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_5_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_6_task1 to tgt: /FatehiChenar2018.sedml/plot_6_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_6_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_6_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_7_task1 to tgt: /FatehiChenar2018.sedml/plot_7_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_7_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_7_task1\nwrite_dataset src: /FatehiChenar2018.sedml/plot_8_task1 to tgt: /FatehiChenar2018.sedml/plot_8_task1, shape: (2, 1001), type: float64\niterating over chunks for /FatehiChenar2018.sedml/plot_8_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FatehiChenar2018.sedml/plot_8_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/647a618d77b6669655064b4b\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.70742,"sedDocuments":[{"location":"FatehiChenar2018.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 8 plots:\r\n  FatehiChenar2018.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 60 data sets\r\n    Plots (8):\r\n      plot_1_task1: 1 curves\r\n      plot_2_task1: 1 curves\r\n      plot_3_task1: 1 curves\r\n      plot_4_task1: 1 curves\r\n      plot_5_task1: 1 curves\r\n      plot_6_task1: 1 curves\r\n      plot_7_task1: 1 curves\r\n      plot_8_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: FatehiChenar2018.sedml ...\r\n  Found 1 tasks and 9 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n      `plot_2_task1`\r\n      `plot_3_task1`\r\n      `plot_4_task1`\r\n      `plot_5_task1`\r\n      `plot_6_task1`\r\n      `plot_7_task1`\r\n      `plot_8_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 9 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_2_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `plot_3_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 4: `plot_4_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 5: `plot_5_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 6: `plot_6_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 7: `plot_7_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 8: `plot_8_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 9: `autogen_report_for_task1` ...","duration":2.26103,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.16441,"algorithm":"KISAO_0000560","simulatorDetails":[{"key":"methodName","value":"deterministic"},{"key":"methodCode","value":22},{"key":"parameters","value":{"Absolute Tolerance":1e-12,"Integrate Reduced Model":false,"Max Internal Steps":10000,"Relative Tolerance":0.000001}}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.277986,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_2_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.134769,"curves":[{"id":"p2_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_3_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.137497,"curves":[{"id":"p3_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_4_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.133944,"curves":[{"id":"p4_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_5_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.131139,"curves":[{"id":"p5_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_6_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.221066,"curves":[{"id":"p6_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_7_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.137476,"curves":[{"id":"p7_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_8_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.140791,"curves":[{"id":"p8_curve_1_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.387878,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_T","status":"SUCCEEDED"},{"id":"autogen_task1_I","status":"SUCCEEDED"},{"id":"autogen_task1_F_1","status":"SUCCEEDED"},{"id":"autogen_task1_F_2","status":"SUCCEEDED"},{"id":"autogen_task1_R","status":"SUCCEEDED"},{"id":"autogen_task1_A","status":"SUCCEEDED"},{"id":"autogen_task1_N","status":"SUCCEEDED"},{"id":"autogen_task1_E","status":"SUCCEEDED"},{"id":"autogen_task1_V","status":"SUCCEEDED"},{"id":"autogen_task1_d","status":"SUCCEEDED"},{"id":"autogen_task1_beta","status":"SUCCEEDED"},{"id":"autogen_task1_rho","status":"SUCCEEDED"},{"id":"autogen_task1_psi_1","status":"SUCCEEDED"},{"id":"autogen_task1_delta","status":"SUCCEEDED"},{"id":"autogen_task1_mu_1","status":"SUCCEEDED"},{"id":"autogen_task1_s_1","status":"SUCCEEDED"},{"id":"autogen_task1_s_2","status":"SUCCEEDED"},{"id":"autogen_task1_mu_2","status":"SUCCEEDED"},{"id":"autogen_task1_s_1_prime","status":"SUCCEEDED"},{"id":"autogen_task1_s_2_prime","status":"SUCCEEDED"},{"id":"autogen_task1_psi_2","status":"SUCCEEDED"},{"id":"autogen_task1_p_1","status":"SUCCEEDED"},{"id":"autogen_task1_delta_1","status":"SUCCEEDED"},{"id":"autogen_task1_p_2","status":"SUCCEEDED"},{"id":"autogen_task1_p_3","status":"SUCCEEDED"},{"id":"autogen_task1_delta_2","status":"SUCCEEDED"},{"id":"autogen_task1_q_1","status":"SUCCEEDED"},{"id":"autogen_task1_q_2","status":"SUCCEEDED"},{"id":"autogen_task1_r_e","status":"SUCCEEDED"},{"id":"autogen_task1_alpha","status":"SUCCEEDED"},{"id":"autogen_task1_p","status":"SUCCEEDED"},{"id":"autogen_task1_s_3","status":"SUCCEEDED"},{"id":"autogen_task1_s_4","status":"SUCCEEDED"},{"id":"autogen_task1_c","status":"SUCCEEDED"},{"id":"autogen_task1_k","status":"SUCCEEDED"},{"id":"autogen_task1_d_a","status":"SUCCEEDED"},{"id":"autogen_task1_q","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_Death","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_Infection","status":"SUCCEEDED"},{"id":"autogen_task1_Refractory_To_Uninfected","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_To_Refractory_IFN","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_Death","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_Killing_Immune","status":"SUCCEEDED"},{"id":"autogen_task1_IFN_AB_Production_Infected","status":"SUCCEEDED"},{"id":"autogen_task1_IFN_AB_Degradation","status":"SUCCEEDED"},{"id":"autogen_task1_IFN_G_Production_CTLs","status":"SUCCEEDED"},{"id":"autogen_task1_IFN_G_Production_NK","status":"SUCCEEDED"},{"id":"autogen_task1_IFN_G_Degradation","status":"SUCCEEDED"},{"id":"autogen_task1_NK_Cells_Proliferaton","status":"SUCCEEDED"},{"id":"autogen_task1_NK_Cells_Production_IFN","status":"SUCCEEDED"},{"id":"autogen_task1_HBV_S_CTL_Proliferation","status":"SUCCEEDED"},{"id":"autogen_task1_HBV_S_CTL_Proliferation_Antigen","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_To_Refractory","status":"SUCCEEDED"},{"id":"autogen_task1_Virus_Production","status":"SUCCEEDED"},{"id":"autogen_task1_Virus_Clearance_Natural","status":"SUCCEEDED"},{"id":"autogen_task1_Virus_Clearance_Antibodies","status":"SUCCEEDED"},{"id":"autogen_task1_Antibody_Turnover","status":"SUCCEEDED"},{"id":"autogen_task1_Antibody_Production_Virus","status":"SUCCEEDED"}]}]}]}