{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    480      0 --:--:-- --:--:-- --:--:--   480\n\r100 99792  100 99792    0     0   242k      0 --:--:-- --:--:-- --:--:--  242k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 2 SED documents:\n  SED documents (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Tasks (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Outputs (4):\n    Succeeded: 4\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (17.2 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/rawLog.txt\nCompleted 6.0 KiB/6.0 KiB (52.1 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 84%)\n  adding: outputs/Al-Tuwairqi2020 - Fig2b simulation.sedml/ (stored 0%)\n  adding: outputs/Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1.pdf (deflated 30%)\n  adding: outputs/Al-Tuwairqi2020 - Fig2a simulation.sedml/ (stored 0%)\n  adding: outputs/Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1.pdf (deflated 30%)\n  adding: outputs/reports.h5 (deflated 25%)\n  adding: rawLog.txt (deflated 70%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 192.7 KiB/192.7 KiB (1.5 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/outputs/reports.h5\nCompleted 13.0 KiB/212.4 KiB (109.8 KiB/s) with 5 file(s) remaining\rupload: outputs/Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/outputs/Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1.pdf\nCompleted 13.0 KiB/212.4 KiB (109.8 KiB/s) with 4 file(s) remaining\rCompleted 179.2 KiB/212.4 KiB (1.4 MiB/s) with 4 file(s) remaining \rupload: ./output.zip to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/output.zip\nCompleted 179.2 KiB/212.4 KiB (1.4 MiB/s) with 3 file(s) remaining\rCompleted 191.9 KiB/212.4 KiB (1.3 MiB/s) with 3 file(s) remaining\rupload: outputs/Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/outputs/Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1.pdf\nCompleted 191.9 KiB/212.4 KiB (1.3 MiB/s) with 2 file(s) remaining\rCompleted 209.6 KiB/212.4 KiB (1.4 MiB/s) with 2 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/outputs/plots.zip\nCompleted 209.6 KiB/212.4 KiB (1.4 MiB/s) with 1 file(s) remaining\rCompleted 212.4 KiB/212.4 KiB (1.2 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/Al-Tuwairqi2020 - Fig2a simulation.sedml  \n  inflating: contents/Al-Tuwairqi2020 - Fig2b simulation.sedml  \n  inflating: contents/Al-Tuwairqi2020 - Phase I virotherapy-biopax2.owl  \n  inflating: contents/Al-Tuwairqi2020 - Phase I virotherapy-biopax3.owl  \n  inflating: contents/Al-Tuwairqi2020 - Phase I virotherapy-matlab.m  \n  inflating: contents/Al-Tuwairqi2020 - Phase I virotherapy-octave.m  \n  inflating: contents/Al-Tuwairqi2020 - Phase I virotherapy.cps  \n  inflating: contents/Al-Tuwairqi2020 - Phase I virotherapy.ode  \n  inflating: contents/Al-Tuwairqi2020 - Phase I virotherapy.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 8.5 KiB/213.1 KiB (88.7 KiB/s) with 13 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Fig2b simulation.sedml to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Fig2b simulation.sedml\nCompleted 8.5 KiB/213.1 KiB (88.7 KiB/s) with 12 file(s) remaining\rCompleted 20.6 KiB/213.1 KiB (148.7 KiB/s) with 12 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Phase I virotherapy-biopax2.owl to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Phase I virotherapy-biopax2.owl\nCompleted 20.6 KiB/213.1 KiB (148.7 KiB/s) with 11 file(s) remaining\rCompleted 20.7 KiB/213.1 KiB (143.1 KiB/s) with 11 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/curation_notes.txt\nCompleted 20.7 KiB/213.1 KiB (143.1 KiB/s) with 10 file(s) remaining\rCompleted 29.9 KiB/213.1 KiB (202.2 KiB/s) with 10 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Fig2a simulation.sedml to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Fig2a simulation.sedml\nCompleted 29.9 KiB/213.1 KiB (202.2 KiB/s) with 9 file(s) remaining\rCompleted 45.4 KiB/213.1 KiB (301.2 KiB/s) with 9 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Phase I virotherapy-biopax3.owl to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Phase I virotherapy-biopax3.owl\nCompleted 45.4 KiB/213.1 KiB (301.2 KiB/s) with 8 file(s) remaining\rCompleted 70.9 KiB/213.1 KiB (451.5 KiB/s) with 8 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Phase I virotherapy.xml to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Phase I virotherapy.xml\nCompleted 70.9 KiB/213.1 KiB (451.5 KiB/s) with 7 file(s) remaining\rCompleted 149.4 KiB/213.1 KiB (747.7 KiB/s) with 7 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/curation_image.png\nCompleted 149.4 KiB/213.1 KiB (747.7 KiB/s) with 6 file(s) remaining\rCompleted 197.7 KiB/213.1 KiB (974.7 KiB/s) with 6 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Phase I virotherapy.cps to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Phase I virotherapy.cps\nCompleted 197.7 KiB/213.1 KiB (974.7 KiB/s) with 5 file(s) remaining\rCompleted 201.7 KiB/213.1 KiB (981.0 KiB/s) with 5 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Phase I virotherapy-octave.m to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Phase I virotherapy-octave.m\nCompleted 201.7 KiB/213.1 KiB (981.0 KiB/s) with 4 file(s) remaining\rCompleted 205.0 KiB/213.1 KiB (965.7 KiB/s) with 4 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/metadata.rdf\nCompleted 205.0 KiB/213.1 KiB (965.7 KiB/s) with 3 file(s) remaining\rCompleted 206.8 KiB/213.1 KiB (957.0 KiB/s) with 3 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/manifest.xml\nCompleted 206.8 KiB/213.1 KiB (957.0 KiB/s) with 2 file(s) remaining\rCompleted 209.1 KiB/213.1 KiB (956.7 KiB/s) with 2 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Phase I virotherapy.ode to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Phase I virotherapy.ode\nCompleted 209.1 KiB/213.1 KiB (956.7 KiB/s) with 1 file(s) remaining\rCompleted 213.1 KiB/213.1 KiB (957.9 KiB/s) with 1 file(s) remaining\rupload: contents/Al-Tuwairqi2020 - Phase I virotherapy-matlab.m to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/contents/Al-Tuwairqi2020 - Phase I virotherapy-matlab.m\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 9.0 KiB/9.0 KiB (92.5 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a5f6577b6669655063f77/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\nERROR 2023-06-02 17:41:26,254 utillib.py:531 ERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-8051d3a9-f4eb9cc7-ffde-0119aa-ef3b5c/value?select=%5B0%3A12%2C0%3A1001%5D&domain=%2Fresults%2F647a5f6577b6669655063f77 (Caused by ResponseError('too many 500 error responses',))\ncreating group /Al-Tuwairqi2020 - Fig2a simulation.sedml\ncreating dataset /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1, shape: (12, 1001), type: float64\ndataset created, uuid: d-8051d3a9-f4eb9cc7-ffde-0119aa-ef3b5c, chunk_size: (12, 1001)\ncreating dataset /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1, shape: (4, 1001), type: float64\ndataset created, uuid: d-8051d3a9-f4eb9cc7-fbaf-b8fd99-9f2146, chunk_size: (4, 1001)\ncreating group /Al-Tuwairqi2020 - Fig2b simulation.sedml\ncreating dataset /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1, shape: (12, 1001), type: float64\ndataset created, uuid: d-8051d3a9-f4eb9cc7-eff7-b04217-95f17b, chunk_size: (12, 1001)\ncreating dataset /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1, shape: (4, 1001), type: float64\ndataset created, uuid: d-8051d3a9-f4eb9cc7-c04b-28edff-b1975e, chunk_size: (4, 1001)\ncreating attribute combineArchiveLocation in /Al-Tuwairqi2020 - Fig2a simulation.sedml\ncreating attribute uri in /Al-Tuwairqi2020 - Fig2a simulation.sedml\ncreating attribute _type in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute uri in /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\ncreating attribute _type in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute sedmlId in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute sedmlName in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute uri in /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Al-Tuwairqi2020 - Fig2b simulation.sedml\ncreating attribute uri in /Al-Tuwairqi2020 - Fig2b simulation.sedml\ncreating attribute _type in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute uri in /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\ncreating attribute _type in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute sedmlId in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute sedmlName in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreating attribute uri in /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\ncreate_links: /\ngot link: Al-Tuwairqi2020 - Fig2a simulation.sedml\ngot link: Al-Tuwairqi2020 - Fig2b simulation.sedml\ncreate_links: /Al-Tuwairqi2020 - Fig2a simulation.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Al-Tuwairqi2020 - Fig2b simulation.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\nwrite_dataset src: /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1 to tgt: /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1, shape: (12, 1001), type: float64\niterating over chunks for /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\nERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-8051d3a9-f4eb9cc7-ffde-0119aa-ef3b5c/value?select=%5B0%3A12%2C0%3A1001%5D&domain=%2Fresults%2F647a5f6577b6669655063f77 (Caused by ResponseError('too many 500 error responses',))\ndone with dataload for /Al-Tuwairqi2020 - Fig2a simulation.sedml/autogen_report_for_task1\nwrite_dataset src: /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1 to tgt: /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1, shape: (4, 1001), type: float64\niterating over chunks for /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))\ndone with dataload for /Al-Tuwairqi2020 - Fig2a simulation.sedml/plot_1_task1\nwrite_dataset src: /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1 to tgt: /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1, shape: (12, 1001), type: float64\niterating over chunks for /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 12, 1), slice(0, 1001, 1))\ndone with dataload for /Al-Tuwairqi2020 - Fig2b simulation.sedml/autogen_report_for_task1\nwrite_dataset src: /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1 to tgt: /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1, shape: (4, 1001), type: float64\niterating over chunks for /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))\ndone with dataload for /Al-Tuwairqi2020 - Fig2b simulation.sedml/plot_1_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/647a5f6577b6669655063f77\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":1.970991,"sedDocuments":[{"location":"Al-Tuwairqi2020 - Fig2a simulation.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 2 SED-ML documents with 2 models, 2 simulations, 2 tasks, 2 reports, and 2 plots:\r\n  Al-Tuwairqi2020 - Fig2a simulation.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 12 data sets\r\n    Plots (1):\r\n      plot_1_task1: 3 curves\r\n  Al-Tuwairqi2020 - Fig2b simulation.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 12 data sets\r\n    Plots (1):\r\n      plot_1_task1: 3 curves\r\n\r\nExecuting SED-ML file 1: Al-Tuwairqi2020 - Fig2a simulation.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.874001,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.205512,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.395682,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.13752,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_uninfected_cancer_cells","status":"SUCCEEDED"},{"id":"autogen_task1_infected_cancer_cells","status":"SUCCEEDED"},{"id":"autogen_task1_free_virus","status":"SUCCEEDED"},{"id":"autogen_task1_f","status":"SUCCEEDED"},{"id":"autogen_task1_h","status":"SUCCEEDED"},{"id":"autogen_task1_m","status":"SUCCEEDED"},{"id":"autogen_task1_Whole_organism","status":"SUCCEEDED"},{"id":"autogen_task1_uninfected_cancer_cell_growth","status":"SUCCEEDED"},{"id":"autogen_task1_cancer_cell_infection","status":"SUCCEEDED"},{"id":"autogen_task1_infected_cancer_cell_lysis","status":"SUCCEEDED"},{"id":"autogen_task1_virus_infection_removal","status":"SUCCEEDED"}]}]},{"location":"Al-Tuwairqi2020 - Fig2b simulation.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: Al-Tuwairqi2020 - Fig2b simulation.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.559834,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.093267,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.196598,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.133618,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_uninfected_cancer_cells","status":"SUCCEEDED"},{"id":"autogen_task1_infected_cancer_cells","status":"SUCCEEDED"},{"id":"autogen_task1_free_virus","status":"SUCCEEDED"},{"id":"autogen_task1_f","status":"SUCCEEDED"},{"id":"autogen_task1_h","status":"SUCCEEDED"},{"id":"autogen_task1_m","status":"SUCCEEDED"},{"id":"autogen_task1_Whole_organism","status":"SUCCEEDED"},{"id":"autogen_task1_uninfected_cancer_cell_growth","status":"SUCCEEDED"},{"id":"autogen_task1_cancer_cell_infection","status":"SUCCEEDED"},{"id":"autogen_task1_infected_cancer_cell_lysis","status":"SUCCEEDED"},{"id":"autogen_task1_virus_infection_removal","status":"SUCCEEDED"}]}]}]}