{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    472      0 --:--:-- --:--:-- --:--:--   472\n\r100 37263  100 37263    0     0  92575      0 --:--:-- --:--:-- --:--:-- 92575\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 8 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 8\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (8):\n    Succeeded: 8\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (15.5 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/rawLog.txt\nCompleted 6.0 KiB/6.0 KiB (60.9 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 83%)\n  adding: outputs/Jarrah2014.sedml/ (stored 0%)\n  adding: outputs/Jarrah2014.sedml/plot_3_task1.pdf (deflated 31%)\n  adding: outputs/Jarrah2014.sedml/plot_2_task1.pdf (deflated 29%)\n  adding: outputs/Jarrah2014.sedml/plot_4_task1.pdf (deflated 30%)\n  adding: outputs/Jarrah2014.sedml/plot_7_task1.pdf (deflated 29%)\n  adding: outputs/Jarrah2014.sedml/plot_5_task1.pdf (deflated 32%)\n  adding: outputs/Jarrah2014.sedml/plot_1_task1.pdf (deflated 31%)\n  adding: outputs/Jarrah2014.sedml/plot_6_task1.pdf (deflated 31%)\n  adding: outputs/reports.h5 (deflated 29%)\n  adding: rawLog.txt (deflated 70%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/321.3 KiB (5.9 MiB/s) with 1 file(s) remaining\rCompleted 321.3 KiB/321.3 KiB (2.5 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/reports.h5\nCompleted 256.0 KiB/446.1 KiB (5.0 MiB/s) with 10 file(s) remaining\rCompleted 268.9 KiB/446.1 KiB (2.0 MiB/s) with 10 file(s) remaining\rupload: outputs/Jarrah2014.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/Jarrah2014.sedml/plot_1_task1.pdf\nCompleted 268.9 KiB/446.1 KiB (2.0 MiB/s) with 9 file(s) remaining\rCompleted 307.5 KiB/446.1 KiB (2.2 MiB/s) with 9 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/output.zip\nCompleted 307.5 KiB/446.1 KiB (2.2 MiB/s) with 8 file(s) remaining\rCompleted 320.0 KiB/446.1 KiB (2.2 MiB/s) with 8 file(s) remaining\rupload: outputs/Jarrah2014.sedml/plot_2_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/Jarrah2014.sedml/plot_2_task1.pdf\nCompleted 320.0 KiB/446.1 KiB (2.2 MiB/s) with 7 file(s) remaining\rCompleted 379.8 KiB/446.1 KiB (2.2 MiB/s) with 7 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/plots.zip\nCompleted 379.8 KiB/446.1 KiB (2.2 MiB/s) with 6 file(s) remaining\rCompleted 382.9 KiB/446.1 KiB (2.1 MiB/s) with 6 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/rawLog.txt\nCompleted 382.9 KiB/446.1 KiB (2.1 MiB/s) with 5 file(s) remaining\rCompleted 394.6 KiB/446.1 KiB (2.1 MiB/s) with 5 file(s) remaining\rupload: outputs/Jarrah2014.sedml/plot_6_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/Jarrah2014.sedml/plot_6_task1.pdf\nCompleted 394.6 KiB/446.1 KiB (2.1 MiB/s) with 4 file(s) remaining\rCompleted 406.7 KiB/446.1 KiB (2.2 MiB/s) with 4 file(s) remaining\rupload: outputs/Jarrah2014.sedml/plot_3_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/Jarrah2014.sedml/plot_3_task1.pdf\nCompleted 406.7 KiB/446.1 KiB (2.2 MiB/s) with 3 file(s) remaining\rCompleted 418.5 KiB/446.1 KiB (2.2 MiB/s) with 3 file(s) remaining\rupload: outputs/Jarrah2014.sedml/plot_4_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/Jarrah2014.sedml/plot_4_task1.pdf\nCompleted 418.5 KiB/446.1 KiB (2.2 MiB/s) with 2 file(s) remaining\rCompleted 429.3 KiB/446.1 KiB (2.1 MiB/s) with 2 file(s) remaining\rupload: outputs/Jarrah2014.sedml/plot_5_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/Jarrah2014.sedml/plot_5_task1.pdf\nCompleted 429.3 KiB/446.1 KiB (2.1 MiB/s) with 1 file(s) remaining\rCompleted 446.1 KiB/446.1 KiB (2.1 MiB/s) with 1 file(s) remaining\rupload: outputs/Jarrah2014.sedml/plot_7_task1.pdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/outputs/Jarrah2014.sedml/plot_7_task1.pdf\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/Jarrah2014-biopax2.owl  \n  inflating: contents/Jarrah2014-biopax3.owl  \n  inflating: contents/Jarrah2014-matlab.m  \n  inflating: contents/Jarrah2014-octave.m  \n  inflating: contents/Jarrah2014.cps  \n  inflating: contents/Jarrah2014.ode  \n  inflating: contents/Jarrah2014.sedml  \n  inflating: contents/Jarrah2014.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 14.6 KiB/252.6 KiB (132.7 KiB/s) with 12 file(s) remaining\rupload: contents/Jarrah2014-biopax2.owl to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014-biopax2.owl\nCompleted 14.6 KiB/252.6 KiB (132.7 KiB/s) with 11 file(s) remaining\rCompleted 20.9 KiB/252.6 KiB (168.5 KiB/s) with 11 file(s) remaining\rupload: contents/Jarrah2014-matlab.m to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014-matlab.m\nCompleted 20.9 KiB/252.6 KiB (168.5 KiB/s) with 10 file(s) remaining\rCompleted 27.2 KiB/252.6 KiB (211.4 KiB/s) with 10 file(s) remaining\rupload: contents/Jarrah2014-octave.m to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014-octave.m\nCompleted 27.2 KiB/252.6 KiB (211.4 KiB/s) with 9 file(s) remaining\rCompleted 36.6 KiB/252.6 KiB (224.7 KiB/s) with 9 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/curation_image.png\nCompleted 36.6 KiB/252.6 KiB (224.7 KiB/s) with 8 file(s) remaining\rCompleted 93.5 KiB/252.6 KiB (552.3 KiB/s) with 8 file(s) remaining\rupload: contents/Jarrah2014.xml to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014.xml\nCompleted 93.5 KiB/252.6 KiB (552.3 KiB/s) with 7 file(s) remaining\rCompleted 201.0 KiB/252.6 KiB (1.1 MiB/s) with 7 file(s) remaining \rupload: contents/Jarrah2014.cps to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014.cps\nCompleted 201.0 KiB/252.6 KiB (1.1 MiB/s) with 6 file(s) remaining\rCompleted 205.3 KiB/252.6 KiB (1.1 MiB/s) with 6 file(s) remaining\rupload: contents/Jarrah2014.ode to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014.ode\nCompleted 205.3 KiB/252.6 KiB (1.1 MiB/s) with 5 file(s) remaining\rCompleted 205.6 KiB/252.6 KiB (1.1 MiB/s) with 5 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/curation_notes.txt\nCompleted 205.6 KiB/252.6 KiB (1.1 MiB/s) with 4 file(s) remaining\rCompleted 207.0 KiB/252.6 KiB (1.1 MiB/s) with 4 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/manifest.xml\nCompleted 207.0 KiB/252.6 KiB (1.1 MiB/s) with 3 file(s) remaining\rCompleted 227.2 KiB/252.6 KiB (1.1 MiB/s) with 3 file(s) remaining\rupload: contents/Jarrah2014-biopax3.owl to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014-biopax3.owl\nCompleted 227.2 KiB/252.6 KiB (1.1 MiB/s) with 2 file(s) remaining\rCompleted 229.9 KiB/252.6 KiB (1.1 MiB/s) with 2 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/metadata.rdf\nCompleted 229.9 KiB/252.6 KiB (1.1 MiB/s) with 1 file(s) remaining\rCompleted 252.6 KiB/252.6 KiB (1.1 MiB/s) with 1 file(s) remaining\rupload: contents/Jarrah2014.sedml to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/contents/Jarrah2014.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 9.6 KiB/9.6 KiB (104.1 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a5f6377b6669655063f61/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\nERROR 2023-06-02 17:41:31,798 utillib.py:531 ERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-669ea4cb-a96a6c59-a812-9759c1-e056be/value?select=%5B0%3A2%2C0%3A1001%5D&domain=%2Fresults%2F647a5f6377b6669655063f61 (Caused by ResponseError('too many 500 error responses',))\ncreating group /Jarrah2014.sedml\ncreating dataset /Jarrah2014.sedml/autogen_report_for_task1, shape: (37, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-fdde-8e1c64-e0dd7d, chunk_size: (37, 1001)\ncreating dataset /Jarrah2014.sedml/plot_1_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-a812-9759c1-e056be, chunk_size: (2, 1001)\ncreating dataset /Jarrah2014.sedml/plot_2_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-3478-307b64-8ec445, chunk_size: (2, 1001)\ncreating dataset /Jarrah2014.sedml/plot_3_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-f478-e3199d-87490f, chunk_size: (2, 1001)\ncreating dataset /Jarrah2014.sedml/plot_4_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-c005-49263d-f2ecf8, chunk_size: (2, 1001)\ncreating dataset /Jarrah2014.sedml/plot_5_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-26ad-6bba6b-18b4b2, chunk_size: (2, 1001)\ncreating dataset /Jarrah2014.sedml/plot_6_task1, shape: (2, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-d787-366792-93da32, chunk_size: (2, 1001)\ncreating dataset /Jarrah2014.sedml/plot_7_task1, shape: (11, 1001), type: float64\ndataset created, uuid: d-669ea4cb-a96a6c59-18dd-4c9319-cf984c, chunk_size: (11, 1001)\ncreating attribute combineArchiveLocation in /Jarrah2014.sedml\ncreating attribute uri in /Jarrah2014.sedml\ncreating attribute _type in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute uri in /Jarrah2014.sedml/autogen_report_for_task1\ncreating attribute _type in /Jarrah2014.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/plot_1_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/plot_1_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/plot_1_task1\ncreating attribute uri in /Jarrah2014.sedml/plot_1_task1\ncreating attribute _type in /Jarrah2014.sedml/plot_2_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/plot_2_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/plot_2_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/plot_2_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/plot_2_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/plot_2_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/plot_2_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/plot_2_task1\ncreating attribute uri in /Jarrah2014.sedml/plot_2_task1\ncreating attribute _type in /Jarrah2014.sedml/plot_3_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/plot_3_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/plot_3_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/plot_3_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/plot_3_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/plot_3_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/plot_3_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/plot_3_task1\ncreating attribute uri in /Jarrah2014.sedml/plot_3_task1\ncreating attribute _type in /Jarrah2014.sedml/plot_4_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/plot_4_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/plot_4_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/plot_4_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/plot_4_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/plot_4_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/plot_4_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/plot_4_task1\ncreating attribute uri in /Jarrah2014.sedml/plot_4_task1\ncreating attribute _type in /Jarrah2014.sedml/plot_5_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/plot_5_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/plot_5_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/plot_5_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/plot_5_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/plot_5_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/plot_5_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/plot_5_task1\ncreating attribute uri in /Jarrah2014.sedml/plot_5_task1\ncreating attribute _type in /Jarrah2014.sedml/plot_6_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/plot_6_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/plot_6_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/plot_6_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/plot_6_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/plot_6_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/plot_6_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/plot_6_task1\ncreating attribute uri in /Jarrah2014.sedml/plot_6_task1\ncreating attribute _type in /Jarrah2014.sedml/plot_7_task1\ncreating attribute sedmlDataSetDataTypes in /Jarrah2014.sedml/plot_7_task1\ncreating attribute sedmlDataSetIds in /Jarrah2014.sedml/plot_7_task1\ncreating attribute sedmlDataSetLabels in /Jarrah2014.sedml/plot_7_task1\ncreating attribute sedmlDataSetNames in /Jarrah2014.sedml/plot_7_task1\ncreating attribute sedmlDataSetShapes in /Jarrah2014.sedml/plot_7_task1\ncreating attribute sedmlId in /Jarrah2014.sedml/plot_7_task1\ncreating attribute sedmlName in /Jarrah2014.sedml/plot_7_task1\ncreating attribute uri in /Jarrah2014.sedml/plot_7_task1\ncreate_links: /\ngot link: Jarrah2014.sedml\ncreate_links: /Jarrah2014.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ngot link: plot_2_task1\ngot link: plot_3_task1\ngot link: plot_4_task1\ngot link: plot_5_task1\ngot link: plot_6_task1\ngot link: plot_7_task1\nwrite_dataset src: /Jarrah2014.sedml/autogen_report_for_task1 to tgt: /Jarrah2014.sedml/autogen_report_for_task1, shape: (37, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 37, 1), slice(0, 1001, 1))\ndone with dataload for /Jarrah2014.sedml/autogen_report_for_task1\nwrite_dataset src: /Jarrah2014.sedml/plot_1_task1 to tgt: /Jarrah2014.sedml/plot_1_task1, shape: (2, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/plot_1_task1\nERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-669ea4cb-a96a6c59-a812-9759c1-e056be/value?select=%5B0%3A2%2C0%3A1001%5D&domain=%2Fresults%2F647a5f6377b6669655063f61 (Caused by ResponseError('too many 500 error responses',))\ndone with dataload for /Jarrah2014.sedml/plot_1_task1\nwrite_dataset src: /Jarrah2014.sedml/plot_2_task1 to tgt: /Jarrah2014.sedml/plot_2_task1, shape: (2, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/plot_2_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Jarrah2014.sedml/plot_2_task1\nwrite_dataset src: /Jarrah2014.sedml/plot_3_task1 to tgt: /Jarrah2014.sedml/plot_3_task1, shape: (2, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/plot_3_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Jarrah2014.sedml/plot_3_task1\nwrite_dataset src: /Jarrah2014.sedml/plot_4_task1 to tgt: /Jarrah2014.sedml/plot_4_task1, shape: (2, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/plot_4_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Jarrah2014.sedml/plot_4_task1\nwrite_dataset src: /Jarrah2014.sedml/plot_5_task1 to tgt: /Jarrah2014.sedml/plot_5_task1, shape: (2, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/plot_5_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Jarrah2014.sedml/plot_5_task1\nwrite_dataset src: /Jarrah2014.sedml/plot_6_task1 to tgt: /Jarrah2014.sedml/plot_6_task1, shape: (2, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/plot_6_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Jarrah2014.sedml/plot_6_task1\nwrite_dataset src: /Jarrah2014.sedml/plot_7_task1 to tgt: /Jarrah2014.sedml/plot_7_task1, shape: (11, 1001), type: float64\niterating over chunks for /Jarrah2014.sedml/plot_7_task1\nwriting dataset data for slice: (slice(0, 11, 1), slice(0, 1001, 1))\ndone with dataload for /Jarrah2014.sedml/plot_7_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/647a5f6377b6669655063f61\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.881327,"sedDocuments":[{"location":"Jarrah2014.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 7 plots:\r\n  Jarrah2014.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 37 data sets\r\n    Plots (7):\r\n      plot_1_task1: 1 curves\r\n      plot_2_task1: 1 curves\r\n      plot_3_task1: 1 curves\r\n      plot_4_task1: 1 curves\r\n      plot_5_task1: 1 curves\r\n      plot_6_task1: 1 curves\r\n      plot_7_task1: 10 curves\r\n\r\nExecuting SED-ML file 1: Jarrah2014.sedml ...\r\n  Found 1 tasks and 8 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n      `plot_2_task1`\r\n      `plot_3_task1`\r\n      `plot_4_task1`\r\n      `plot_5_task1`\r\n      `plot_6_task1`\r\n      `plot_7_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 8 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_2_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `plot_3_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 4: `plot_4_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 5: `plot_5_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 6: `plot_6_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 7: `plot_7_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 8: `autogen_report_for_task1` ...","duration":2.441058,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.16562,"algorithm":"KISAO_0000560","simulatorDetails":[{"key":"methodName","value":"deterministic"},{"key":"methodCode","value":22},{"key":"parameters","value":{"Absolute Tolerance":1e-12,"Integrate Reduced Model":false,"Max Internal Steps":100000,"Relative Tolerance":0.000001}}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.335715,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_2_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.176657,"curves":[{"id":"p2_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_3_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.169255,"curves":[{"id":"p3_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_4_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.150376,"curves":[{"id":"p4_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_5_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.163107,"curves":[{"id":"p5_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_6_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.250252,"curves":[{"id":"p6_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_7_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.328697,"curves":[{"id":"p7_curve_1_task1","status":"SUCCEEDED"},{"id":"p7_curve_2_task1","status":"SUCCEEDED"},{"id":"p7_curve_3_task1","status":"SUCCEEDED"},{"id":"p7_curve_4_task1","status":"SUCCEEDED"},{"id":"p7_curve_5_task1","status":"SUCCEEDED"},{"id":"p7_curve_6_task1","status":"SUCCEEDED"},{"id":"p7_curve_7_task1","status":"SUCCEEDED"},{"id":"p7_curve_8_task1","status":"SUCCEEDED"},{"id":"p7_curve_9_task1","status":"SUCCEEDED"},{"id":"p7_curve_10_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.340973,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_C","status":"SUCCEEDED"},{"id":"autogen_task1_D","status":"SUCCEEDED"},{"id":"autogen_task1_H","status":"SUCCEEDED"},{"id":"autogen_task1_M","status":"SUCCEEDED"},{"id":"autogen_task1_N","status":"SUCCEEDED"},{"id":"autogen_task1_R","status":"SUCCEEDED"},{"id":"autogen_task1_bH","status":"SUCCEEDED"},{"id":"autogen_task1_bC","status":"SUCCEEDED"},{"id":"autogen_task1_bM","status":"SUCCEEDED"},{"id":"autogen_task1_alpha","status":"SUCCEEDED"},{"id":"autogen_task1_k1","status":"SUCCEEDED"},{"id":"autogen_task1_k2","status":"SUCCEEDED"},{"id":"autogen_task1_k3","status":"SUCCEEDED"},{"id":"autogen_task1_k4","status":"SUCCEEDED"},{"id":"autogen_task1_k5","status":"SUCCEEDED"},{"id":"autogen_task1_k6","status":"SUCCEEDED"},{"id":"autogen_task1_dH","status":"SUCCEEDED"},{"id":"autogen_task1_dC","status":"SUCCEEDED"},{"id":"autogen_task1_dM","status":"SUCCEEDED"},{"id":"autogen_task1_dD","status":"SUCCEEDED"},{"id":"autogen_task1_H0","status":"SUCCEEDED"},{"id":"autogen_task1_C0","status":"SUCCEEDED"},{"id":"autogen_task1_M0","status":"SUCCEEDED"},{"id":"autogen_task1_sigma","status":"SUCCEEDED"},{"id":"autogen_task1_m","status":"SUCCEEDED"},{"id":"autogen_task1_h","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_reaction","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_1","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_2","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_3","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_4","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_5","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_6","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_7","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_8","status":"SUCCEEDED"}]}]}]}