{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    470      0 --:--:-- --:--:-- --:--:--   469\n\r100  188k  100  188k    0     0   451k      0 --:--:-- --:--:-- --:--:--  451k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 5 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 5\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (5):\n    Succeeded: 5\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (23.9 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/rawLog.txt\nCompleted 5.0 KiB/5.0 KiB (77.2 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 81%)\n  adding: outputs/Intosalmi2015.sedml/ (stored 0%)\n  adding: outputs/Intosalmi2015.sedml/plot_3_task1.pdf (deflated 34%)\n  adding: outputs/Intosalmi2015.sedml/plot_2_task1.pdf (deflated 33%)\n  adding: outputs/Intosalmi2015.sedml/plot_4_task1.pdf (deflated 35%)\n  adding: outputs/Intosalmi2015.sedml/plot_1_task1.pdf (deflated 27%)\n  adding: outputs/reports.h5 (deflated 23%)\n  adding: rawLog.txt (deflated 71%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 228.9 KiB/228.9 KiB (2.4 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/outputs/reports.h5\nCompleted 211.6 KiB/293.5 KiB (2.2 MiB/s) with 7 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/output.zip\nCompleted 211.6 KiB/293.5 KiB (2.2 MiB/s) with 6 file(s) remaining\rCompleted 221.6 KiB/293.5 KiB (1.9 MiB/s) with 6 file(s) remaining\rupload: outputs/Intosalmi2015.sedml/plot_3_task1.pdf to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/outputs/Intosalmi2015.sedml/plot_3_task1.pdf\nCompleted 221.6 KiB/293.5 KiB (1.9 MiB/s) with 5 file(s) remaining\rCompleted 231.5 KiB/293.5 KiB (1.9 MiB/s) with 5 file(s) remaining\rupload: outputs/Intosalmi2015.sedml/plot_2_task1.pdf to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/outputs/Intosalmi2015.sedml/plot_2_task1.pdf\nCompleted 231.5 KiB/293.5 KiB (1.9 MiB/s) with 4 file(s) remaining\rCompleted 241.9 KiB/293.5 KiB (1.9 MiB/s) with 4 file(s) remaining\rupload: outputs/Intosalmi2015.sedml/plot_4_task1.pdf to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/outputs/Intosalmi2015.sedml/plot_4_task1.pdf\nCompleted 241.9 KiB/293.5 KiB (1.9 MiB/s) with 3 file(s) remaining\rCompleted 259.1 KiB/293.5 KiB (2.0 MiB/s) with 3 file(s) remaining\rupload: outputs/Intosalmi2015.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/outputs/Intosalmi2015.sedml/plot_1_task1.pdf\nCompleted 259.1 KiB/293.5 KiB (2.0 MiB/s) with 2 file(s) remaining\rCompleted 290.6 KiB/293.5 KiB (2.1 MiB/s) with 2 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/outputs/plots.zip\nCompleted 290.6 KiB/293.5 KiB (2.1 MiB/s) with 1 file(s) remaining\rCompleted 293.5 KiB/293.5 KiB (2.0 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/12918_2015_223_MOESM2_ESM-biopax2.owl  \n  inflating: contents/12918_2015_223_MOESM2_ESM-biopax3.owl  \n  inflating: contents/12918_2015_223_MOESM2_ESM-matlab.m  \n  inflating: contents/12918_2015_223_MOESM2_ESM-octave.m  \n  inflating: contents/12918_2015_223_MOESM2_ESM.ode  \n  inflating: contents/12918_2015_223_MOESM2_ESM.xml  \n  inflating: contents/Intosalmi2015-biopax2.owl  \n  inflating: contents/Intosalmi2015-biopax3.owl  \n  inflating: contents/Intosalmi2015-matlab.m  \n  inflating: contents/Intosalmi2015-octave.m  \n  inflating: contents/Intosalmi2015.cps  \n  inflating: contents/Intosalmi2015.ode  \n  inflating: contents/Intosalmi2015.sedml  \n  inflating: contents/Intosalmi2015.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 40.0 KiB/563.7 KiB (520.3 KiB/s) with 18 file(s) remaining\rupload: contents/12918_2015_223_MOESM2_ESM-biopax3.owl to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/12918_2015_223_MOESM2_ESM-biopax3.owl\nCompleted 40.0 KiB/563.7 KiB (520.3 KiB/s) with 17 file(s) remaining\rCompleted 49.0 KiB/563.7 KiB (486.7 KiB/s) with 17 file(s) remaining\rupload: contents/12918_2015_223_MOESM2_ESM-matlab.m to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/12918_2015_223_MOESM2_ESM-matlab.m\nCompleted 49.0 KiB/563.7 KiB (486.7 KiB/s) with 16 file(s) remaining\rCompleted 58.0 KiB/563.7 KiB (474.0 KiB/s) with 16 file(s) remaining\rupload: contents/12918_2015_223_MOESM2_ESM-octave.m to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/12918_2015_223_MOESM2_ESM-octave.m\nCompleted 58.0 KiB/563.7 KiB (474.0 KiB/s) with 15 file(s) remaining\rCompleted 67.2 KiB/563.7 KiB (528.9 KiB/s) with 15 file(s) remaining\rupload: contents/Intosalmi2015-matlab.m to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015-matlab.m\nCompleted 67.2 KiB/563.7 KiB (528.9 KiB/s) with 14 file(s) remaining\rCompleted 88.8 KiB/563.7 KiB (655.6 KiB/s) with 14 file(s) remaining\rupload: contents/12918_2015_223_MOESM2_ESM-biopax2.owl to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/12918_2015_223_MOESM2_ESM-biopax2.owl\nCompleted 88.8 KiB/563.7 KiB (655.6 KiB/s) with 13 file(s) remaining\rCompleted 97.9 KiB/563.7 KiB (699.3 KiB/s) with 13 file(s) remaining\rupload: contents/Intosalmi2015-octave.m to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015-octave.m\nCompleted 97.9 KiB/563.7 KiB (699.3 KiB/s) with 12 file(s) remaining\rCompleted 186.2 KiB/563.7 KiB (1.2 MiB/s) with 12 file(s) remaining \rupload: contents/Intosalmi2015.cps to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015.cps\nCompleted 186.2 KiB/563.7 KiB (1.2 MiB/s) with 11 file(s) remaining\rCompleted 362.9 KiB/563.7 KiB (2.4 MiB/s) with 11 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/curation_image.png\nCompleted 362.9 KiB/563.7 KiB (2.4 MiB/s) with 10 file(s) remaining\rCompleted 363.1 KiB/563.7 KiB (2.3 MiB/s) with 10 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/curation_notes.txt\nCompleted 363.1 KiB/563.7 KiB (2.3 MiB/s) with 9 file(s) remaining\rCompleted 368.9 KiB/563.7 KiB (2.2 MiB/s) with 9 file(s) remaining\rupload: contents/Intosalmi2015.ode to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015.ode\nCompleted 368.9 KiB/563.7 KiB (2.2 MiB/s) with 8 file(s) remaining\rCompleted 390.3 KiB/563.7 KiB (2.3 MiB/s) with 8 file(s) remaining\rupload: contents/Intosalmi2015.sedml to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015.sedml\nCompleted 390.3 KiB/563.7 KiB (2.3 MiB/s) with 7 file(s) remaining\rCompleted 392.5 KiB/563.7 KiB (2.2 MiB/s) with 7 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/manifest.xml\nCompleted 392.5 KiB/563.7 KiB (2.2 MiB/s) with 6 file(s) remaining\rCompleted 452.3 KiB/563.7 KiB (2.5 MiB/s) with 6 file(s) remaining\rupload: contents/Intosalmi2015.xml to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015.xml\nCompleted 452.3 KiB/563.7 KiB (2.5 MiB/s) with 5 file(s) remaining\rCompleted 454.2 KiB/563.7 KiB (2.4 MiB/s) with 5 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/metadata.rdf\nCompleted 454.2 KiB/563.7 KiB (2.4 MiB/s) with 4 file(s) remaining\rCompleted 501.3 KiB/563.7 KiB (2.4 MiB/s) with 4 file(s) remaining\rupload: contents/Intosalmi2015-biopax3.owl to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015-biopax3.owl\nCompleted 501.3 KiB/563.7 KiB (2.4 MiB/s) with 3 file(s) remaining\rCompleted 506.9 KiB/563.7 KiB (2.3 MiB/s) with 3 file(s) remaining\rupload: contents/12918_2015_223_MOESM2_ESM.ode to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/12918_2015_223_MOESM2_ESM.ode\nCompleted 506.9 KiB/563.7 KiB (2.3 MiB/s) with 2 file(s) remaining\rCompleted 535.2 KiB/563.7 KiB (2.4 MiB/s) with 2 file(s) remaining\rupload: contents/12918_2015_223_MOESM2_ESM.xml to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/12918_2015_223_MOESM2_ESM.xml\nCompleted 535.2 KiB/563.7 KiB (2.4 MiB/s) with 1 file(s) remaining\rCompleted 563.7 KiB/563.7 KiB (2.5 MiB/s) with 1 file(s) remaining\rupload: contents/Intosalmi2015-biopax2.owl to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/contents/Intosalmi2015-biopax2.owl\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 10.7 KiB/10.7 KiB (146.0 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a4b930fb37cdb9ae73a5b/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\nERROR 2023-06-02 16:18:17,553 utillib.py:531 ERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-6fa404ec-4a6cd464-4ccc-bfee81-2443e8/value?select=%5B0%3A2%2C0%3A701%5D&domain=%2Fresults%2F647a4b930fb37cdb9ae73a5b (Caused by ResponseError('too many 500 error responses',))\ncreating group /Intosalmi2015.sedml\ncreating dataset /Intosalmi2015.sedml/autogen_report_for_task1, shape: (30, 701), type: float64\ndataset created, uuid: d-6fa404ec-4a6cd464-3bec-0b5383-a7c56a, chunk_size: (30, 701)\ncreating dataset /Intosalmi2015.sedml/plot_1_task1, shape: (11, 701), type: float64\ndataset created, uuid: d-6fa404ec-4a6cd464-3232-c0501f-ddb0b8, chunk_size: (11, 701)\ncreating dataset /Intosalmi2015.sedml/plot_2_task1, shape: (2, 701), type: float64\ndataset created, uuid: d-6fa404ec-4a6cd464-efc8-42db16-8b4cca, chunk_size: (2, 701)\ncreating dataset /Intosalmi2015.sedml/plot_3_task1, shape: (2, 701), type: float64\ndataset created, uuid: d-6fa404ec-4a6cd464-0031-fb1fec-1dec61, chunk_size: (2, 701)\ncreating dataset /Intosalmi2015.sedml/plot_4_task1, shape: (2, 701), type: float64\ndataset created, uuid: d-6fa404ec-4a6cd464-4ccc-bfee81-2443e8, chunk_size: (2, 701)\ncreating attribute combineArchiveLocation in /Intosalmi2015.sedml\ncreating attribute uri in /Intosalmi2015.sedml\ncreating attribute _type in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute uri in /Intosalmi2015.sedml/autogen_report_for_task1\ncreating attribute _type in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute sedmlId in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute sedmlName in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute uri in /Intosalmi2015.sedml/plot_1_task1\ncreating attribute _type in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute sedmlDataSetDataTypes in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute sedmlDataSetIds in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute sedmlDataSetLabels in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute sedmlDataSetNames in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute sedmlDataSetShapes in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute sedmlId in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute sedmlName in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute uri in /Intosalmi2015.sedml/plot_2_task1\ncreating attribute _type in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute sedmlDataSetDataTypes in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute sedmlDataSetIds in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute sedmlDataSetLabels in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute sedmlDataSetNames in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute sedmlDataSetShapes in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute sedmlId in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute sedmlName in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute uri in /Intosalmi2015.sedml/plot_3_task1\ncreating attribute _type in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute sedmlDataSetDataTypes in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute sedmlDataSetIds in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute sedmlDataSetLabels in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute sedmlDataSetNames in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute sedmlDataSetShapes in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute sedmlId in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute sedmlName in /Intosalmi2015.sedml/plot_4_task1\ncreating attribute uri in /Intosalmi2015.sedml/plot_4_task1\ncreate_links: /\ngot link: Intosalmi2015.sedml\ncreate_links: /Intosalmi2015.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ngot link: plot_2_task1\ngot link: plot_3_task1\ngot link: plot_4_task1\nwrite_dataset src: /Intosalmi2015.sedml/autogen_report_for_task1 to tgt: /Intosalmi2015.sedml/autogen_report_for_task1, shape: (30, 701), type: float64\niterating over chunks for /Intosalmi2015.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 30, 1), slice(0, 701, 1))\ndone with dataload for /Intosalmi2015.sedml/autogen_report_for_task1\nwrite_dataset src: /Intosalmi2015.sedml/plot_1_task1 to tgt: /Intosalmi2015.sedml/plot_1_task1, shape: (11, 701), type: float64\niterating over chunks for /Intosalmi2015.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 11, 1), slice(0, 701, 1))\ndone with dataload for /Intosalmi2015.sedml/plot_1_task1\nwrite_dataset src: /Intosalmi2015.sedml/plot_2_task1 to tgt: /Intosalmi2015.sedml/plot_2_task1, shape: (2, 701), type: float64\niterating over chunks for /Intosalmi2015.sedml/plot_2_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 701, 1))\ndone with dataload for /Intosalmi2015.sedml/plot_2_task1\nwrite_dataset src: /Intosalmi2015.sedml/plot_3_task1 to tgt: /Intosalmi2015.sedml/plot_3_task1, shape: (2, 701), type: float64\niterating over chunks for /Intosalmi2015.sedml/plot_3_task1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 701, 1))\ndone with dataload for /Intosalmi2015.sedml/plot_3_task1\nwrite_dataset src: /Intosalmi2015.sedml/plot_4_task1 to tgt: /Intosalmi2015.sedml/plot_4_task1, shape: (2, 701), type: float64\niterating over chunks for /Intosalmi2015.sedml/plot_4_task1\nERROR : failed to copy dataset data : HTTPSConnectionPool(host='data.biosimulations.org', port=443): Max retries exceeded with url: /datasets/d-6fa404ec-4a6cd464-4ccc-bfee81-2443e8/value?select=%5B0%3A2%2C0%3A701%5D&domain=%2Fresults%2F647a4b930fb37cdb9ae73a5b (Caused by ResponseError('too many 500 error responses',))\ndone with dataload for /Intosalmi2015.sedml/plot_4_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/647a4b930fb37cdb9ae73a5b\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":17.518926,"sedDocuments":[{"location":"Intosalmi2015.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 4 plots:\r\n  Intosalmi2015.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 30 data sets\r\n    Plots (4):\r\n      plot_1_task1: 10 curves\r\n      plot_2_task1: 1 curves\r\n      plot_3_task1: 1 curves\r\n      plot_4_task1: 1 curves\r\n\r\nExecuting SED-ML file 1: Intosalmi2015.sedml ...\r\n  Found 1 tasks and 5 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n      `plot_2_task1`\r\n      `plot_3_task1`\r\n      `plot_4_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 5 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_2_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `plot_3_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 4: `plot_4_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 5: `autogen_report_for_task1` ...","duration":17.156558,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":16.043589,"algorithm":"KISAO_0000496","simulatorDetails":[{"key":"solver","value":"amici.amici.CVodeSolver"},{"key":"method","value":"amici.runAmiciSimulation"},{"key":"arguments"}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.300184,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"},{"id":"p1_curve_4_task1","status":"SUCCEEDED"},{"id":"p1_curve_5_task1","status":"SUCCEEDED"},{"id":"p1_curve_6_task1","status":"SUCCEEDED"},{"id":"p1_curve_7_task1","status":"SUCCEEDED"},{"id":"p1_curve_8_task1","status":"SUCCEEDED"},{"id":"p1_curve_9_task1","status":"SUCCEEDED"},{"id":"p1_curve_10_task1","status":"SUCCEEDED"}]},{"id":"plot_2_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.139976,"curves":[{"id":"p2_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_3_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.153052,"curves":[{"id":"p3_curve_1_task1","status":"SUCCEEDED"}]},{"id":"plot_4_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.138421,"curves":[{"id":"p4_curve_1_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.177454,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_IL6ext","status":"SUCCEEDED"},{"id":"autogen_task1_IL6int","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3mRNA","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3prot_star","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3prot","status":"SUCCEEDED"},{"id":"autogen_task1_TGFbext","status":"SUCCEEDED"},{"id":"autogen_task1_TGFbint","status":"SUCCEEDED"},{"id":"autogen_task1_RORgtmRNA","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3prot_star","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3mRNA","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_IL6_conversion","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3_basal_expression","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3_autoactivation","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3_mRNA_degradation","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3_translation","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3_activation","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3_protein_degradation","status":"SUCCEEDED"},{"id":"autogen_task1_STAT3_phosphoprotein_degradation","status":"SUCCEEDED"},{"id":"autogen_task1_TGFb_conversion","status":"SUCCEEDED"},{"id":"autogen_task1_RORgt_inhibition_by_FOXP3","status":"SUCCEEDED"},{"id":"autogen_task1_RORgt_degradation","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3_basal_expression","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3_activation_by_TGFb","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3_inhibition_by_STAT3","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3_mRNA_degradation","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3_translation_activation","status":"SUCCEEDED"},{"id":"autogen_task1_FOXP3_protein_degradation","status":"SUCCEEDED"},{"id":"autogen_task1_RORgt_activation_by_TGFb_and_STAT3","status":"SUCCEEDED"}]}]}]}