{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    437      0 --:--:-- --:--:-- --:--:--   438\n\r100  245k  100  245k    0     0   555k      0 --:--:-- --:--:-- --:--:--  555k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 2 SED documents:\n  SED documents (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Tasks (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Outputs (4):\n    Succeeded: 4\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (26.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/rawLog.txt\nCompleted 12.1 KiB/12.1 KiB (168.3 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 90%)\n  adding: outputs/Macrophages Plasticity b.sedml/ (stored 0%)\n  adding: outputs/Macrophages Plasticity b.sedml/plot_1_task1.pdf (deflated 31%)\n  adding: outputs/Macrophages Plasticity a.sedml/ (stored 0%)\n  adding: outputs/Macrophages Plasticity a.sedml/plot_1_task1.pdf (deflated 31%)\n  adding: outputs/reports.h5 (deflated 35%)\n  adding: rawLog.txt (deflated 70%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 177.0 KiB/177.0 KiB (1.9 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/outputs/reports.h5\nCompleted 141.8 KiB/199.8 KiB (1.6 MiB/s) with 5 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/output.zip\nCompleted 141.8 KiB/199.8 KiB (1.6 MiB/s) with 4 file(s) remaining\rCompleted 158.4 KiB/199.8 KiB (1.3 MiB/s) with 4 file(s) remaining\rupload: outputs/Macrophages Plasticity b.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/outputs/Macrophages Plasticity b.sedml/plot_1_task1.pdf\nCompleted 158.4 KiB/199.8 KiB (1.3 MiB/s) with 3 file(s) remaining\rCompleted 175.0 KiB/199.8 KiB (1.4 MiB/s) with 3 file(s) remaining\rupload: outputs/Macrophages Plasticity a.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/outputs/Macrophages Plasticity a.sedml/plot_1_task1.pdf\nCompleted 175.0 KiB/199.8 KiB (1.4 MiB/s) with 2 file(s) remaining\rCompleted 197.0 KiB/199.8 KiB (1.5 MiB/s) with 2 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/outputs/plots.zip\nCompleted 197.0 KiB/199.8 KiB (1.5 MiB/s) with 1 file(s) remaining\rCompleted 199.8 KiB/199.8 KiB (1.5 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/Eftimie2019-Macrophages Plasticity.cps  \n  inflating: contents/Macrophages Plasticity a.sedml  \n  inflating: contents/Macrophages Plasticity b.sedml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/figure.png     \n  inflating: contents/metadata.rdf   \n  inflating: contents/model-biopax2.owl  \n  inflating: contents/model-biopax3.owl  \n  inflating: contents/model-matlab.m  \n  inflating: contents/model-octave.m  \n  inflating: contents/model.ode      \n  inflating: contents/model.xml      \n  inflating: contents/manifest.xml   \nCompleted 38.1 KiB/709.1 KiB (477.5 KiB/s) with 14 file(s) remaining\rupload: contents/Macrophages Plasticity a.sedml to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/Macrophages Plasticity a.sedml\nCompleted 38.1 KiB/709.1 KiB (477.5 KiB/s) with 13 file(s) remaining\rCompleted 75.5 KiB/709.1 KiB (647.2 KiB/s) with 13 file(s) remaining\rupload: contents/Macrophages Plasticity b.sedml to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/Macrophages Plasticity b.sedml\nCompleted 75.5 KiB/709.1 KiB (647.2 KiB/s) with 12 file(s) remaining\rCompleted 229.2 KiB/709.1 KiB (1.8 MiB/s) with 12 file(s) remaining \rupload: contents/Eftimie2019-Macrophages Plasticity.cps to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/Eftimie2019-Macrophages Plasticity.cps\nCompleted 229.2 KiB/709.1 KiB (1.8 MiB/s) with 11 file(s) remaining\rCompleted 230.8 KiB/709.1 KiB (1.7 MiB/s) with 11 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/manifest.xml\nCompleted 230.8 KiB/709.1 KiB (1.7 MiB/s) with 10 file(s) remaining\rCompleted 260.7 KiB/709.1 KiB (1.8 MiB/s) with 10 file(s) remaining\rupload: contents/model-biopax2.owl to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/model-biopax2.owl\nCompleted 260.7 KiB/709.1 KiB (1.8 MiB/s) with 9 file(s) remaining\rCompleted 306.2 KiB/709.1 KiB (2.0 MiB/s) with 9 file(s) remaining\rupload: contents/model-biopax3.owl to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/model-biopax3.owl\nCompleted 306.2 KiB/709.1 KiB (2.0 MiB/s) with 8 file(s) remaining\rCompleted 419.5 KiB/709.1 KiB (2.5 MiB/s) with 8 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/curation_image.png\nCompleted 419.5 KiB/709.1 KiB (2.5 MiB/s) with 7 file(s) remaining\rCompleted 434.4 KiB/709.1 KiB (2.5 MiB/s) with 7 file(s) remaining\rupload: contents/model-matlab.m to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/model-matlab.m\nCompleted 434.4 KiB/709.1 KiB (2.5 MiB/s) with 6 file(s) remaining\rCompleted 446.9 KiB/709.1 KiB (2.5 MiB/s) with 6 file(s) remaining\rCompleted 461.7 KiB/709.1 KiB (2.6 MiB/s) with 6 file(s) remaining\rupload: contents/model-octave.m to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/model-octave.m\nCompleted 461.7 KiB/709.1 KiB (2.6 MiB/s) with 5 file(s) remaining\rCompleted 462.2 KiB/709.1 KiB (2.5 MiB/s) with 5 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/curation_notes.txt\nCompleted 462.2 KiB/709.1 KiB (2.5 MiB/s) with 4 file(s) remaining\rupload: contents/model.ode to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/model.ode\nCompleted 462.2 KiB/709.1 KiB (2.5 MiB/s) with 3 file(s) remaining\rCompleted 466.1 KiB/709.1 KiB (2.4 MiB/s) with 3 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/metadata.rdf\nCompleted 466.1 KiB/709.1 KiB (2.4 MiB/s) with 2 file(s) remaining\rCompleted 579.4 KiB/709.1 KiB (2.8 MiB/s) with 2 file(s) remaining\rupload: contents/figure.png to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/figure.png\nCompleted 579.4 KiB/709.1 KiB (2.8 MiB/s) with 1 file(s) remaining\rCompleted 709.1 KiB/709.1 KiB (3.2 MiB/s) with 1 file(s) remaining\rupload: contents/model.xml to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/contents/model.xml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 8.5 KiB/8.5 KiB (131.9 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/647a4b650fb37cdb9ae73676/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /Macrophages Plasticity a.sedml\ncreating dataset /Macrophages Plasticity a.sedml/autogen_report_for_task1, shape: (65, 221), type: float64\ndataset created, uuid: d-b8a74d02-f1d6cd0d-25d4-79182f-036d74, chunk_size: (65, 221)\ncreating dataset /Macrophages Plasticity a.sedml/plot_1_task1, shape: (10, 221), type: float64\ndataset created, uuid: d-b8a74d02-f1d6cd0d-707e-d45778-50a6e5, chunk_size: (10, 221)\ncreating group /Macrophages Plasticity b.sedml\ncreating dataset /Macrophages Plasticity b.sedml/autogen_report_for_task1, shape: (65, 221), type: float64\ndataset created, uuid: d-b8a74d02-f1d6cd0d-7c2b-b32928-219168, chunk_size: (65, 221)\ncreating dataset /Macrophages Plasticity b.sedml/plot_1_task1, shape: (10, 221), type: float64\ndataset created, uuid: d-b8a74d02-f1d6cd0d-d3a5-1814ee-b1e3fc, chunk_size: (10, 221)\ncreating attribute combineArchiveLocation in /Macrophages Plasticity a.sedml\ncreating attribute uri in /Macrophages Plasticity a.sedml\ncreating attribute _type in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute uri in /Macrophages Plasticity a.sedml/autogen_report_for_task1\ncreating attribute _type in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute sedmlId in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute sedmlName in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute uri in /Macrophages Plasticity a.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Macrophages Plasticity b.sedml\ncreating attribute uri in /Macrophages Plasticity b.sedml\ncreating attribute _type in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute uri in /Macrophages Plasticity b.sedml/autogen_report_for_task1\ncreating attribute _type in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute sedmlId in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute sedmlName in /Macrophages Plasticity b.sedml/plot_1_task1\ncreating attribute uri in /Macrophages Plasticity b.sedml/plot_1_task1\ncreate_links: /\ngot link: Macrophages Plasticity a.sedml\ngot link: Macrophages Plasticity b.sedml\ncreate_links: /Macrophages Plasticity a.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Macrophages Plasticity b.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\nwrite_dataset src: /Macrophages Plasticity a.sedml/autogen_report_for_task1 to tgt: /Macrophages Plasticity a.sedml/autogen_report_for_task1, shape: (65, 221), type: float64\niterating over chunks for /Macrophages Plasticity a.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 65, 1), slice(0, 221, 1))\ndone with dataload for /Macrophages Plasticity a.sedml/autogen_report_for_task1\nwrite_dataset src: /Macrophages Plasticity a.sedml/plot_1_task1 to tgt: /Macrophages Plasticity a.sedml/plot_1_task1, shape: (10, 221), type: float64\niterating over chunks for /Macrophages Plasticity a.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 10, 1), slice(0, 221, 1))\ndone with dataload for /Macrophages Plasticity a.sedml/plot_1_task1\nwrite_dataset src: /Macrophages Plasticity b.sedml/autogen_report_for_task1 to tgt: /Macrophages Plasticity b.sedml/autogen_report_for_task1, shape: (65, 221), type: float64\niterating over chunks for /Macrophages Plasticity b.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 65, 1), slice(0, 221, 1))\ndone with dataload for /Macrophages Plasticity b.sedml/autogen_report_for_task1\nwrite_dataset src: /Macrophages Plasticity b.sedml/plot_1_task1 to tgt: /Macrophages Plasticity b.sedml/plot_1_task1, shape: (10, 221), type: float64\niterating over chunks for /Macrophages Plasticity b.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 10, 1), slice(0, 221, 1))\ndone with dataload for /Macrophages Plasticity b.sedml/plot_1_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/647a4b650fb37cdb9ae73676\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.605285,"sedDocuments":[{"location":"Macrophages Plasticity a.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 2 SED-ML documents with 2 models, 2 simulations, 2 tasks, 2 reports, and 2 plots:\r\n  Macrophages Plasticity a.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 65 data sets\r\n    Plots (1):\r\n      plot_1_task1: 9 curves\r\n  Macrophages Plasticity b.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 65 data sets\r\n    Plots (1):\r\n      plot_1_task1: 9 curves\r\n\r\nExecuting SED-ML file 1: Macrophages Plasticity a.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":1.014846,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.215718,"algorithm":"KISAO_0000560","simulatorDetails":[{"key":"methodName","value":"deterministic"},{"key":"methodCode","value":22},{"key":"parameters","value":{"Absolute Tolerance":1e-12,"Integrate Reduced Model":false,"Max Internal Steps":10000,"Relative Tolerance":0.000001}}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.389904,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"},{"id":"p1_curve_4_task1","status":"SUCCEEDED"},{"id":"p1_curve_5_task1","status":"SUCCEEDED"},{"id":"p1_curve_6_task1","status":"SUCCEEDED"},{"id":"p1_curve_7_task1","status":"SUCCEEDED"},{"id":"p1_curve_8_task1","status":"SUCCEEDED"},{"id":"p1_curve_9_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.1605,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_UnInfected_Tumour_Cells_Xu","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_Tumour_Cells_Xi","status":"SUCCEEDED"},{"id":"autogen_task1_Virus_Xv","status":"SUCCEEDED"},{"id":"autogen_task1_Effector_Cytotoxic_CD8_TCells__Xe","status":"SUCCEEDED"},{"id":"autogen_task1_M1_Macrophage_Xm1","status":"SUCCEEDED"},{"id":"autogen_task1_M2_Macrophage_Xm2","status":"SUCCEEDED"},{"id":"autogen_task1_d_u","status":"SUCCEEDED"},{"id":"autogen_task1_d_m1","status":"SUCCEEDED"},{"id":"autogen_task1_H","status":"SUCCEEDED"},{"id":"autogen_task1_r","status":"SUCCEEDED"},{"id":"autogen_task1_K","status":"SUCCEEDED"},{"id":"autogen_task1_d_v","status":"SUCCEEDED"},{"id":"autogen_task1_v_h_u","status":"SUCCEEDED"},{"id":"autogen_task1_h_e","status":"SUCCEEDED"},{"id":"autogen_task1_h_m","status":"SUCCEEDED"},{"id":"autogen_task1_d_m2","status":"SUCCEEDED"},{"id":"autogen_task1_delta_i","status":"SUCCEEDED"},{"id":"autogen_task1_b","status":"SUCCEEDED"},{"id":"autogen_task1_v_d_u","status":"SUCCEEDED"},{"id":"autogen_task1_v_d_m1","status":"SUCCEEDED"},{"id":"autogen_task1_omega","status":"SUCCEEDED"},{"id":"autogen_task1_d_em1","status":"SUCCEEDED"},{"id":"autogen_task1_v_a_1","status":"SUCCEEDED"},{"id":"autogen_task1_u_a_1","status":"SUCCEEDED"},{"id":"autogen_task1_p_m1","status":"SUCCEEDED"},{"id":"autogen_task1_M","status":"SUCCEEDED"},{"id":"autogen_task1_o_r_m1","status":"SUCCEEDED"},{"id":"autogen_task1_o_r_m2","status":"SUCCEEDED"},{"id":"autogen_task1_u_r_m1","status":"SUCCEEDED"},{"id":"autogen_task1_v_r_m2","status":"SUCCEEDED"},{"id":"autogen_task1_p_m2","status":"SUCCEEDED"},{"id":"autogen_task1_h_u","status":"SUCCEEDED"},{"id":"autogen_task1_h_v","status":"SUCCEEDED"},{"id":"autogen_task1_d_em2","status":"SUCCEEDED"},{"id":"autogen_task1_u_a_2","status":"SUCCEEDED"},{"id":"autogen_task1_d_ee","status":"SUCCEEDED"},{"id":"autogen_task1_p_e","status":"SUCCEEDED"},{"id":"autogen_task1_d_t","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_logistic_growth","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_infection","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_elimination_1","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_elimination_2","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_growth_M2","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_tumour_cell_death","status":"SUCCEEDED"},{"id":"autogen_task1_virus_growth","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_tumour_cell_elimination_1","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_tumour_cell_elimination_2","status":"SUCCEEDED"},{"id":"autogen_task1_virus_injection","status":"SUCCEEDED"},{"id":"autogen_task1_virus_death","status":"SUCCEEDED"},{"id":"autogen_task1_virus_clearance_1","status":"SUCCEEDED"},{"id":"autogen_task1_virus_clearance_2","status":"SUCCEEDED"},{"id":"autogen_task1_M1_activation_1","status":"SUCCEEDED"},{"id":"autogen_task1_M1_activation_2","status":"SUCCEEDED"},{"id":"autogen_task1_M1_recruitment","status":"SUCCEEDED"},{"id":"autogen_task1_M1_to_M2_repolarisation","status":"SUCCEEDED"},{"id":"autogen_task1_M2_to_M1_repolarisation","status":"SUCCEEDED"},{"id":"autogen_task1_M1_death","status":"SUCCEEDED"},{"id":"autogen_task1_M2_activation","status":"SUCCEEDED"},{"id":"autogen_task1_M2_growth","status":"SUCCEEDED"},{"id":"autogen_task1_M2_death","status":"SUCCEEDED"},{"id":"autogen_task1_T_cells_activation","status":"SUCCEEDED"},{"id":"autogen_task1_T_cells_death","status":"SUCCEEDED"},{"id":"autogen_task1_T_cells_inactivation","status":"SUCCEEDED"}]}]},{"location":"Macrophages Plasticity b.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: Macrophages Plasticity b.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.895058,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.17278,"algorithm":"KISAO_0000560","simulatorDetails":[{"key":"methodName","value":"deterministic"},{"key":"methodCode","value":22},{"key":"parameters","value":{"Absolute Tolerance":1e-12,"Integrate Reduced Model":false,"Max Internal Steps":10000,"Relative Tolerance":0.000001}}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.210078,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"},{"id":"p1_curve_4_task1","status":"SUCCEEDED"},{"id":"p1_curve_5_task1","status":"SUCCEEDED"},{"id":"p1_curve_6_task1","status":"SUCCEEDED"},{"id":"p1_curve_7_task1","status":"SUCCEEDED"},{"id":"p1_curve_8_task1","status":"SUCCEEDED"},{"id":"p1_curve_9_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.163363,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_H","status":"SUCCEEDED"},{"id":"autogen_task1_d_m1","status":"SUCCEEDED"},{"id":"autogen_task1_d_u","status":"SUCCEEDED"},{"id":"autogen_task1_Effector_Cytotoxic_CD8_TCells__Xe","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_Tumour_Cells_Xi","status":"SUCCEEDED"},{"id":"autogen_task1_M1_Macrophage_Xm1","status":"SUCCEEDED"},{"id":"autogen_task1_M2_Macrophage_Xm2","status":"SUCCEEDED"},{"id":"autogen_task1_UnInfected_Tumour_Cells_Xu","status":"SUCCEEDED"},{"id":"autogen_task1_Virus_Xv","status":"SUCCEEDED"},{"id":"autogen_task1_r","status":"SUCCEEDED"},{"id":"autogen_task1_K","status":"SUCCEEDED"},{"id":"autogen_task1_d_v","status":"SUCCEEDED"},{"id":"autogen_task1_v_h_u","status":"SUCCEEDED"},{"id":"autogen_task1_h_e","status":"SUCCEEDED"},{"id":"autogen_task1_h_m","status":"SUCCEEDED"},{"id":"autogen_task1_d_m2","status":"SUCCEEDED"},{"id":"autogen_task1_delta_i","status":"SUCCEEDED"},{"id":"autogen_task1_b","status":"SUCCEEDED"},{"id":"autogen_task1_v_d_u","status":"SUCCEEDED"},{"id":"autogen_task1_v_d_m1","status":"SUCCEEDED"},{"id":"autogen_task1_omega","status":"SUCCEEDED"},{"id":"autogen_task1_d_em1","status":"SUCCEEDED"},{"id":"autogen_task1_v_a_1","status":"SUCCEEDED"},{"id":"autogen_task1_u_a_1","status":"SUCCEEDED"},{"id":"autogen_task1_p_m1","status":"SUCCEEDED"},{"id":"autogen_task1_M","status":"SUCCEEDED"},{"id":"autogen_task1_o_r_m1","status":"SUCCEEDED"},{"id":"autogen_task1_o_r_m2","status":"SUCCEEDED"},{"id":"autogen_task1_u_r_m1","status":"SUCCEEDED"},{"id":"autogen_task1_v_r_m2","status":"SUCCEEDED"},{"id":"autogen_task1_p_m2","status":"SUCCEEDED"},{"id":"autogen_task1_h_u","status":"SUCCEEDED"},{"id":"autogen_task1_h_v","status":"SUCCEEDED"},{"id":"autogen_task1_d_em2","status":"SUCCEEDED"},{"id":"autogen_task1_u_a_2","status":"SUCCEEDED"},{"id":"autogen_task1_d_ee","status":"SUCCEEDED"},{"id":"autogen_task1_p_e","status":"SUCCEEDED"},{"id":"autogen_task1_d_t","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_logistic_growth","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_infection","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_elimination_1","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_elimination_2","status":"SUCCEEDED"},{"id":"autogen_task1_Uninfected_tumour_cell_growth_M2","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_tumour_cell_death","status":"SUCCEEDED"},{"id":"autogen_task1_virus_growth","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_tumour_cell_elimination_1","status":"SUCCEEDED"},{"id":"autogen_task1_Infected_tumour_cell_elimination_2","status":"SUCCEEDED"},{"id":"autogen_task1_virus_injection","status":"SUCCEEDED"},{"id":"autogen_task1_virus_death","status":"SUCCEEDED"},{"id":"autogen_task1_virus_clearance_1","status":"SUCCEEDED"},{"id":"autogen_task1_virus_clearance_2","status":"SUCCEEDED"},{"id":"autogen_task1_M1_activation_1","status":"SUCCEEDED"},{"id":"autogen_task1_M1_activation_2","status":"SUCCEEDED"},{"id":"autogen_task1_M1_recruitment","status":"SUCCEEDED"},{"id":"autogen_task1_M1_to_M2_repolarisation","status":"SUCCEEDED"},{"id":"autogen_task1_M2_to_M1_repolarisation","status":"SUCCEEDED"},{"id":"autogen_task1_M1_death","status":"SUCCEEDED"},{"id":"autogen_task1_M2_activation","status":"SUCCEEDED"},{"id":"autogen_task1_M2_growth","status":"SUCCEEDED"},{"id":"autogen_task1_M2_death","status":"SUCCEEDED"},{"id":"autogen_task1_T_cells_activation","status":"SUCCEEDED"},{"id":"autogen_task1_T_cells_death","status":"SUCCEEDED"},{"id":"autogen_task1_T_cells_inactivation","status":"SUCCEEDED"}]}]}]}