{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    492      0 --:--:-- --:--:-- --:--:--   492\n\r100  287k  100  287k    0     0   558k      0 --:--:-- --:--:-- --:--:--  558k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 3 SED documents:\n  SED documents (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Tasks (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (25.0 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/rawLog.txt\nCompleted 14.9 KiB/14.9 KiB (228.3 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 92%)\n  adding: outputs/Makhlouf2020 - Fig1(c).sedml/ (stored 0%)\n  adding: outputs/Makhlouf2020 - Fig1(c).sedml/plot_1_task1.pdf (deflated 21%)\n  adding: outputs/Makhlouf2020 - Fig1(b).sedml/ (stored 0%)\n  adding: outputs/Makhlouf2020 - Fig1(b).sedml/plot_1_task1.pdf (deflated 21%)\n  adding: outputs/Makhlouf2020 - Fig1(a).sedml/ (stored 0%)\n  adding: outputs/Makhlouf2020 - Fig1(a).sedml/plot_1_task1.pdf (deflated 18%)\n  adding: outputs/reports.h5 (deflated 13%)\n  adding: rawLog.txt (deflated 70%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/626.2 KiB (6.4 MiB/s) with 1 file(s) remaining\rCompleted 512.0 KiB/626.2 KiB (10.8 MiB/s) with 1 file(s) remaining\rCompleted 626.2 KiB/626.2 KiB (5.7 MiB/s) with 1 file(s) remaining \rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/outputs/reports.h5\nCompleted 256.0 KiB/717.2 KiB (6.1 MiB/s) with 6 file(s) remaining\rCompleted 512.0 KiB/717.2 KiB (11.1 MiB/s) with 6 file(s) remaining\rCompleted 598.1 KiB/717.2 KiB (5.6 MiB/s) with 6 file(s) remaining \rupload: ./output.zip to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/output.zip\nCompleted 598.1 KiB/717.2 KiB (5.6 MiB/s) with 5 file(s) remaining\rCompleted 616.6 KiB/717.2 KiB (5.5 MiB/s) with 5 file(s) remaining\rupload: outputs/Makhlouf2020 - Fig1(a).sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/outputs/Makhlouf2020 - Fig1(a).sedml/plot_1_task1.pdf\nCompleted 616.6 KiB/717.2 KiB (5.5 MiB/s) with 4 file(s) remaining\rCompleted 639.8 KiB/717.2 KiB (5.7 MiB/s) with 4 file(s) remaining\rupload: outputs/Makhlouf2020 - Fig1(b).sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/outputs/Makhlouf2020 - Fig1(b).sedml/plot_1_task1.pdf\nCompleted 639.8 KiB/717.2 KiB (5.7 MiB/s) with 3 file(s) remaining\rCompleted 663.1 KiB/717.2 KiB (5.3 MiB/s) with 3 file(s) remaining\rupload: outputs/Makhlouf2020 - Fig1(c).sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/outputs/Makhlouf2020 - Fig1(c).sedml/plot_1_task1.pdf\nCompleted 663.1 KiB/717.2 KiB (5.3 MiB/s) with 2 file(s) remaining\rCompleted 666.1 KiB/717.2 KiB (4.8 MiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/rawLog.txt\nCompleted 666.1 KiB/717.2 KiB (4.8 MiB/s) with 1 file(s) remaining\rCompleted 717.2 KiB/717.2 KiB (4.9 MiB/s) with 1 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/outputs/plots.zip\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/Fig1(a).png    \n  inflating: contents/Fig1(b).png    \n  inflating: contents/Fig1(c).png    \n  inflating: contents/Makhlouf2020 - Fig1(a).sedml  \n  inflating: contents/Makhlouf2020 - Fig1(b).sedml  \n  inflating: contents/Makhlouf2020 - Fig1(c).sedml  \n  inflating: contents/Makhlouf2020-biopax2.owl  \n  inflating: contents/Makhlouf2020-biopax3.owl  \n  inflating: contents/Makhlouf2020-matlab.m  \n  inflating: contents/Makhlouf2020-octave.m  \n  inflating: contents/Makhlouf2020.cps  \n  inflating: contents/Makhlouf2020.ode  \n  inflating: contents/Makhlouf2020.xml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 23.9 KiB/727.0 KiB (198.7 KiB/s) with 17 file(s) remaining\rupload: contents/Makhlouf2020-biopax3.owl to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020-biopax3.owl\nCompleted 23.9 KiB/727.0 KiB (198.7 KiB/s) with 16 file(s) remaining\rCompleted 32.4 KiB/727.0 KiB (263.6 KiB/s) with 16 file(s) remaining\rupload: contents/Makhlouf2020-matlab.m to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020-matlab.m\nCompleted 32.4 KiB/727.0 KiB (263.6 KiB/s) with 15 file(s) remaining\rCompleted 41.0 KiB/727.0 KiB (317.4 KiB/s) with 15 file(s) remaining\rupload: contents/Makhlouf2020-octave.m to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020-octave.m\nCompleted 41.0 KiB/727.0 KiB (317.4 KiB/s) with 14 file(s) remaining\rCompleted 139.5 KiB/727.0 KiB (1.0 MiB/s) with 14 file(s) remaining \rupload: contents/Fig1(c).png to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Fig1(c).png\nCompleted 139.5 KiB/727.0 KiB (1.0 MiB/s) with 13 file(s) remaining\rCompleted 225.6 KiB/727.0 KiB (1.6 MiB/s) with 13 file(s) remaining\rupload: contents/Fig1(b).png to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Fig1(b).png\nCompleted 225.6 KiB/727.0 KiB (1.6 MiB/s) with 12 file(s) remaining\rCompleted 232.3 KiB/727.0 KiB (1.6 MiB/s) with 12 file(s) remaining\rupload: contents/Makhlouf2020.ode to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020.ode\nCompleted 232.3 KiB/727.0 KiB (1.6 MiB/s) with 11 file(s) remaining\rCompleted 348.8 KiB/727.0 KiB (2.1 MiB/s) with 11 file(s) remaining\rupload: contents/Makhlouf2020.cps to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020.cps\nCompleted 348.8 KiB/727.0 KiB (2.1 MiB/s) with 10 file(s) remaining\rCompleted 418.1 KiB/727.0 KiB (2.5 MiB/s) with 10 file(s) remaining\rupload: contents/Makhlouf2020.xml to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020.xml\nCompleted 418.1 KiB/727.0 KiB (2.5 MiB/s) with 9 file(s) remaining\rCompleted 418.2 KiB/727.0 KiB (2.3 MiB/s) with 9 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/curation_notes.txt\nCompleted 418.2 KiB/727.0 KiB (2.3 MiB/s) with 8 file(s) remaining\rCompleted 420.2 KiB/727.0 KiB (2.3 MiB/s) with 8 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/manifest.xml\nCompleted 420.2 KiB/727.0 KiB (2.3 MiB/s) with 7 file(s) remaining\rCompleted 520.1 KiB/727.0 KiB (2.7 MiB/s) with 7 file(s) remaining\rupload: contents/Fig1(a).png to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Fig1(a).png\nCompleted 520.1 KiB/727.0 KiB (2.7 MiB/s) with 6 file(s) remaining\rCompleted 524.0 KiB/727.0 KiB (2.7 MiB/s) with 6 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/metadata.rdf\nCompleted 524.0 KiB/727.0 KiB (2.7 MiB/s) with 5 file(s) remaining\rCompleted 541.1 KiB/727.0 KiB (2.8 MiB/s) with 5 file(s) remaining\rupload: contents/Makhlouf2020-biopax2.owl to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020-biopax2.owl\nCompleted 541.1 KiB/727.0 KiB (2.8 MiB/s) with 4 file(s) remaining\rCompleted 641.1 KiB/727.0 KiB (3.2 MiB/s) with 4 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/curation_image.png\nCompleted 641.1 KiB/727.0 KiB (3.2 MiB/s) with 3 file(s) remaining\rCompleted 669.6 KiB/727.0 KiB (3.1 MiB/s) with 3 file(s) remaining\rupload: contents/Makhlouf2020 - Fig1(b).sedml to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020 - Fig1(b).sedml\nCompleted 669.6 KiB/727.0 KiB (3.1 MiB/s) with 2 file(s) remaining\rCompleted 698.1 KiB/727.0 KiB (3.3 MiB/s) with 2 file(s) remaining\rupload: contents/Makhlouf2020 - Fig1(c).sedml to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020 - Fig1(c).sedml\nCompleted 698.1 KiB/727.0 KiB (3.3 MiB/s) with 1 file(s) remaining\rCompleted 727.0 KiB/727.0 KiB (3.3 MiB/s) with 1 file(s) remaining\rupload: contents/Makhlouf2020 - Fig1(a).sedml to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/contents/Makhlouf2020 - Fig1(a).sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 10.2 KiB/10.2 KiB (162.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/64711feb9a62a8be53f992ae/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /Makhlouf2020 - Fig1(a).sedml\ncreating dataset /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1, shape: (52, 1001), type: float64\ndataset created, uuid: d-8b0ab296-ec9639ff-8e83-89216e-784efd, chunk_size: (52, 1001)\ncreating dataset /Makhlouf2020 - Fig1(a).sedml/plot_1_task1, shape: (7, 1001), type: float64\ndataset created, uuid: d-8b0ab296-ec9639ff-b773-754bca-e3643d, chunk_size: (7, 1001)\ncreating group /Makhlouf2020 - Fig1(b).sedml\ncreating dataset /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1, shape: (52, 1001), type: float64\ndataset created, uuid: d-8b0ab296-ec9639ff-1f39-146616-5601f6, chunk_size: (52, 1001)\ncreating dataset /Makhlouf2020 - Fig1(b).sedml/plot_1_task1, shape: (7, 1001), type: float64\ndataset created, uuid: d-8b0ab296-ec9639ff-a549-dc60ac-e5d767, chunk_size: (7, 1001)\ncreating group /Makhlouf2020 - Fig1(c).sedml\ncreating dataset /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1, shape: (52, 1001), type: float64\ndataset created, uuid: d-8b0ab296-ec9639ff-bf46-ad9ff8-ac9876, chunk_size: (52, 1001)\ncreating dataset /Makhlouf2020 - Fig1(c).sedml/plot_1_task1, shape: (7, 1001), type: float64\ndataset created, uuid: d-8b0ab296-ec9639ff-82c6-f4b8a1-821438, chunk_size: (7, 1001)\ncreating attribute combineArchiveLocation in /Makhlouf2020 - Fig1(a).sedml\ncreating attribute uri in /Makhlouf2020 - Fig1(a).sedml\ncreating attribute _type in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute uri in /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\ncreating attribute _type in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute sedmlId in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute sedmlName in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute uri in /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Makhlouf2020 - Fig1(b).sedml\ncreating attribute uri in /Makhlouf2020 - Fig1(b).sedml\ncreating attribute _type in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute uri in /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\ncreating attribute _type in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute sedmlId in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute sedmlName in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute uri in /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /Makhlouf2020 - Fig1(c).sedml\ncreating attribute uri in /Makhlouf2020 - Fig1(c).sedml\ncreating attribute _type in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute sedmlId in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute sedmlName in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute uri in /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\ncreating attribute _type in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute sedmlId in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute sedmlName in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreating attribute uri in /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\ncreate_links: /\ngot link: Makhlouf2020 - Fig1(a).sedml\ngot link: Makhlouf2020 - Fig1(b).sedml\ngot link: Makhlouf2020 - Fig1(c).sedml\ncreate_links: /Makhlouf2020 - Fig1(a).sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Makhlouf2020 - Fig1(b).sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /Makhlouf2020 - Fig1(c).sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\nwrite_dataset src: /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1 to tgt: /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1, shape: (52, 1001), type: float64\niterating over chunks for /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 52, 1), slice(0, 1001, 1))\ndone with dataload for /Makhlouf2020 - Fig1(a).sedml/autogen_report_for_task1\nwrite_dataset src: /Makhlouf2020 - Fig1(a).sedml/plot_1_task1 to tgt: /Makhlouf2020 - Fig1(a).sedml/plot_1_task1, shape: (7, 1001), type: float64\niterating over chunks for /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 7, 1), slice(0, 1001, 1))\ndone with dataload for /Makhlouf2020 - Fig1(a).sedml/plot_1_task1\nwrite_dataset src: /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1 to tgt: /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1, shape: (52, 1001), type: float64\niterating over chunks for /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 52, 1), slice(0, 1001, 1))\ndone with dataload for /Makhlouf2020 - Fig1(b).sedml/autogen_report_for_task1\nwrite_dataset src: /Makhlouf2020 - Fig1(b).sedml/plot_1_task1 to tgt: /Makhlouf2020 - Fig1(b).sedml/plot_1_task1, shape: (7, 1001), type: float64\niterating over chunks for /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 7, 1), slice(0, 1001, 1))\ndone with dataload for /Makhlouf2020 - Fig1(b).sedml/plot_1_task1\nwrite_dataset src: /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1 to tgt: /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1, shape: (52, 1001), type: float64\niterating over chunks for /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 52, 1), slice(0, 1001, 1))\ndone with dataload for /Makhlouf2020 - Fig1(c).sedml/autogen_report_for_task1\nwrite_dataset src: /Makhlouf2020 - Fig1(c).sedml/plot_1_task1 to tgt: /Makhlouf2020 - Fig1(c).sedml/plot_1_task1, shape: (7, 1001), type: float64\niterating over chunks for /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 7, 1), slice(0, 1001, 1))\ndone with dataload for /Makhlouf2020 - Fig1(c).sedml/plot_1_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/64711feb9a62a8be53f992ae\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":4.341927,"sedDocuments":[{"location":"Makhlouf2020 - Fig1(a).sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 3 SED-ML documents with 3 models, 3 simulations, 3 tasks, 3 reports, and 3 plots:\r\n  Makhlouf2020 - Fig1(a).sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 52 data sets\r\n    Plots (1):\r\n      plot_1_task1: 6 curves\r\n  Makhlouf2020 - Fig1(b).sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 52 data sets\r\n    Plots (1):\r\n      plot_1_task1: 6 curves\r\n  Makhlouf2020 - Fig1(c).sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 52 data sets\r\n    Plots (1):\r\n      plot_1_task1: 6 curves\r\n\r\nExecuting SED-ML file 1: Makhlouf2020 - Fig1(a).sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n  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