{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    382      0 --:--:-- --:--:-- --:--:--   383\n\r  0 84352    0   583    0     0   1263      0  0:01:06 --:--:--  0:01:06  1263\r100 84352  100 84352    0     0   173k      0 --:--:-- --:--:-- --:--:-- 6817k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 3 SED documents:\n  SED documents (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Tasks (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (14.0 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/rawLog.txt\nCompleted 14.0 KiB/14.0 KiB (164.8 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 91%)\n  adding: outputs/AsepticDeath.sedml/ (stored 0%)\n  adding: outputs/AsepticDeath.sedml/plot_1_task1.pdf (deflated 25%)\n  adding: outputs/HealthyOutcome.sedml/ (stored 0%)\n  adding: outputs/HealthyOutcome.sedml/plot_1_task1.pdf (deflated 25%)\n  adding: outputs/SepticDeath.sedml/ (stored 0%)\n  adding: outputs/SepticDeath.sedml/plot_1_task1.pdf (deflated 25%)\n  adding: outputs/reports.h5 (deflated 52%)\n  adding: rawLog.txt (deflated 70%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 144.9 KiB/144.9 KiB (1.4 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/outputs/reports.h5\nCompleted 117.0 KiB/219.7 KiB (1.4 MiB/s) with 6 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/output.zip\nCompleted 117.0 KiB/219.7 KiB (1.4 MiB/s) with 5 file(s) remaining\rCompleted 136.2 KiB/219.7 KiB (1.2 MiB/s) with 5 file(s) remaining\rupload: outputs/AsepticDeath.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/outputs/AsepticDeath.sedml/plot_1_task1.pdf\nCompleted 136.2 KiB/219.7 KiB (1.2 MiB/s) with 4 file(s) remaining\rCompleted 155.3 KiB/219.7 KiB (1.3 MiB/s) with 4 file(s) remaining\rupload: outputs/HealthyOutcome.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/outputs/HealthyOutcome.sedml/plot_1_task1.pdf\nCompleted 155.3 KiB/219.7 KiB (1.3 MiB/s) with 3 file(s) remaining\rCompleted 197.6 KiB/219.7 KiB (1.4 MiB/s) with 3 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/outputs/plots.zip\nCompleted 197.6 KiB/219.7 KiB (1.4 MiB/s) with 2 file(s) remaining\rCompleted 216.8 KiB/219.7 KiB (1.5 MiB/s) with 2 file(s) remaining\rupload: outputs/SepticDeath.sedml/plot_1_task1.pdf to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/outputs/SepticDeath.sedml/plot_1_task1.pdf\nCompleted 216.8 KiB/219.7 KiB (1.5 MiB/s) with 1 file(s) remaining\rCompleted 219.7 KiB/219.7 KiB (1.4 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/AsepticDeath.cps  \n  inflating: contents/AsepticDeath.sedml  \n  inflating: contents/HealthyOutcome-biopax2.owl  \n  inflating: contents/HealthyOutcome-biopax3.owl  \n  inflating: contents/HealthyOutcome-matlab.m  \n  inflating: contents/HealthyOutcome-octave.m  \n  inflating: contents/HealthyOutcome.cps  \n  inflating: contents/HealthyOutcome.ode  \n  inflating: contents/HealthyOutcome.sedml  \n  inflating: contents/HealthyOutcome.xml  \n  inflating: contents/SepticDeath.cps  \n  inflating: contents/SepticDeath.sedml  \n  inflating: contents/curation_image.png  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 23.2 KiB/458.7 KiB (319.7 KiB/s) with 16 file(s) remaining\rupload: contents/AsepticDeath.sedml to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/AsepticDeath.sedml\nCompleted 23.2 KiB/458.7 KiB (319.7 KiB/s) with 15 file(s) remaining\rCompleted 33.8 KiB/458.7 KiB (321.7 KiB/s) with 15 file(s) remaining\rupload: contents/HealthyOutcome-biopax2.owl to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome-biopax2.owl\nCompleted 33.8 KiB/458.7 KiB (321.7 KiB/s) with 14 file(s) remaining\rCompleted 35.7 KiB/458.7 KiB (285.1 KiB/s) with 14 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/manifest.xml\nCompleted 35.7 KiB/458.7 KiB (285.1 KiB/s) with 13 file(s) remaining\rCompleted 51.4 KiB/458.7 KiB (396.1 KiB/s) with 13 file(s) remaining\rupload: contents/HealthyOutcome-biopax3.owl to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome-biopax3.owl\nCompleted 51.4 KiB/458.7 KiB (396.1 KiB/s) with 12 file(s) remaining\rCompleted 74.7 KiB/458.7 KiB (483.7 KiB/s) with 12 file(s) remaining\rupload: contents/HealthyOutcome.sedml to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome.sedml\nCompleted 74.7 KiB/458.7 KiB (483.7 KiB/s) with 11 file(s) remaining\rCompleted 160.7 KiB/458.7 KiB (1.0 MiB/s) with 11 file(s) remaining \rupload: contents/AsepticDeath.cps to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/AsepticDeath.cps\nCompleted 160.7 KiB/458.7 KiB (1.0 MiB/s) with 10 file(s) remaining\rCompleted 201.4 KiB/458.7 KiB (1.2 MiB/s) with 10 file(s) remaining\rupload: contents/HealthyOutcome.xml to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome.xml\nCompleted 201.4 KiB/458.7 KiB (1.2 MiB/s) with 9 file(s) remaining\rCompleted 287.6 KiB/458.7 KiB (1.7 MiB/s) with 9 file(s) remaining\rupload: contents/SepticDeath.cps to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/SepticDeath.cps\nCompleted 287.6 KiB/458.7 KiB (1.7 MiB/s) with 8 file(s) remaining\rCompleted 289.0 KiB/458.7 KiB (1.7 MiB/s) with 8 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/metadata.rdf\nCompleted 289.0 KiB/458.7 KiB (1.7 MiB/s) with 7 file(s) remaining\rCompleted 289.3 KiB/458.7 KiB (1.5 MiB/s) with 7 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/curation_notes.txt\nCompleted 289.3 KiB/458.7 KiB (1.5 MiB/s) with 6 file(s) remaining\rCompleted 312.5 KiB/458.7 KiB (1.6 MiB/s) with 6 file(s) remaining\rupload: contents/SepticDeath.sedml to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/SepticDeath.sedml\nCompleted 312.5 KiB/458.7 KiB (1.6 MiB/s) with 5 file(s) remaining\rCompleted 317.8 KiB/458.7 KiB (1.6 MiB/s) with 5 file(s) remaining\rupload: contents/HealthyOutcome.ode to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome.ode\nCompleted 317.8 KiB/458.7 KiB (1.6 MiB/s) with 4 file(s) remaining\rCompleted 403.9 KiB/458.7 KiB (2.0 MiB/s) with 4 file(s) remaining\rupload: contents/HealthyOutcome.cps to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome.cps\nCompleted 403.9 KiB/458.7 KiB (2.0 MiB/s) with 3 file(s) remaining\rCompleted 444.7 KiB/458.7 KiB (2.2 MiB/s) with 3 file(s) remaining\rupload: contents/curation_image.png to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/curation_image.png\nCompleted 444.7 KiB/458.7 KiB (2.2 MiB/s) with 2 file(s) remaining\rCompleted 451.7 KiB/458.7 KiB (2.0 MiB/s) with 2 file(s) remaining\rupload: contents/HealthyOutcome-matlab.m to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome-matlab.m\nCompleted 451.7 KiB/458.7 KiB (2.0 MiB/s) with 1 file(s) remaining\rCompleted 458.7 KiB/458.7 KiB (1.9 MiB/s) with 1 file(s) remaining\rupload: contents/HealthyOutcome-octave.m to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/contents/HealthyOutcome-octave.m\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 9.6 KiB/9.6 KiB (148.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/64711c8e0dcacb55678ccdf3/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /AsepticDeath.sedml\ncreating dataset /AsepticDeath.sedml/autogen_report_for_task1, shape: (41, 101), type: float64\ndataset created, uuid: d-845aa65c-7ac191c2-7c18-bd26e3-df6d43, chunk_size: (41, 101)\ncreating dataset /AsepticDeath.sedml/plot_1_task1, shape: (9, 101), type: float64\ndataset created, uuid: d-845aa65c-7ac191c2-adc8-ff90f2-b0307a, chunk_size: (9, 101)\ncreating group /HealthyOutcome.sedml\ncreating dataset /HealthyOutcome.sedml/autogen_report_for_task1, shape: (41, 101), type: float64\ndataset created, uuid: d-845aa65c-7ac191c2-c0b2-923163-6fd736, chunk_size: (41, 101)\ncreating dataset /HealthyOutcome.sedml/plot_1_task1, shape: (9, 101), type: float64\ndataset created, uuid: d-845aa65c-7ac191c2-ffe5-916801-2151b5, chunk_size: (9, 101)\ncreating group /SepticDeath.sedml\ncreating dataset /SepticDeath.sedml/autogen_report_for_task1, shape: (41, 101), type: float64\ndataset created, uuid: d-845aa65c-7ac191c2-da88-16ce63-e494d1, chunk_size: (41, 101)\ncreating dataset /SepticDeath.sedml/plot_1_task1, shape: (9, 101), type: float64\ndataset created, uuid: d-845aa65c-7ac191c2-7d35-a11ca5-14ac73, chunk_size: (9, 101)\ncreating attribute combineArchiveLocation in /AsepticDeath.sedml\ncreating attribute uri in /AsepticDeath.sedml\ncreating attribute _type in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute uri in /AsepticDeath.sedml/autogen_report_for_task1\ncreating attribute _type in /AsepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /AsepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /AsepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /AsepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /AsepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /AsepticDeath.sedml/plot_1_task1\ncreating attribute sedmlId in /AsepticDeath.sedml/plot_1_task1\ncreating attribute sedmlName in /AsepticDeath.sedml/plot_1_task1\ncreating attribute uri in /AsepticDeath.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /HealthyOutcome.sedml\ncreating attribute uri in /HealthyOutcome.sedml\ncreating attribute _type in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute uri in /HealthyOutcome.sedml/autogen_report_for_task1\ncreating attribute _type in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute sedmlId in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute sedmlName in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute uri in /HealthyOutcome.sedml/plot_1_task1\ncreating attribute combineArchiveLocation in /SepticDeath.sedml\ncreating attribute uri in /SepticDeath.sedml\ncreating attribute _type in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute uri in /SepticDeath.sedml/autogen_report_for_task1\ncreating attribute _type in /SepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetDataTypes in /SepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetIds in /SepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetLabels in /SepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetNames in /SepticDeath.sedml/plot_1_task1\ncreating attribute sedmlDataSetShapes in /SepticDeath.sedml/plot_1_task1\ncreating attribute sedmlId in /SepticDeath.sedml/plot_1_task1\ncreating attribute sedmlName in /SepticDeath.sedml/plot_1_task1\ncreating attribute uri in /SepticDeath.sedml/plot_1_task1\ncreate_links: /\ngot link: AsepticDeath.sedml\ngot link: HealthyOutcome.sedml\ngot link: SepticDeath.sedml\ncreate_links: /AsepticDeath.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /HealthyOutcome.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\ncreate_links: /SepticDeath.sedml\ngot link: autogen_report_for_task1\ngot link: plot_1_task1\nwrite_dataset src: /AsepticDeath.sedml/autogen_report_for_task1 to tgt: /AsepticDeath.sedml/autogen_report_for_task1, shape: (41, 101), type: float64\niterating over chunks for /AsepticDeath.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 41, 1), slice(0, 101, 1))\ndone with dataload for /AsepticDeath.sedml/autogen_report_for_task1\nwrite_dataset src: /AsepticDeath.sedml/plot_1_task1 to tgt: /AsepticDeath.sedml/plot_1_task1, shape: (9, 101), type: float64\niterating over chunks for /AsepticDeath.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 101, 1))\ndone with dataload for /AsepticDeath.sedml/plot_1_task1\nwrite_dataset src: /HealthyOutcome.sedml/autogen_report_for_task1 to tgt: /HealthyOutcome.sedml/autogen_report_for_task1, shape: (41, 101), type: float64\niterating over chunks for /HealthyOutcome.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 41, 1), slice(0, 101, 1))\ndone with dataload for /HealthyOutcome.sedml/autogen_report_for_task1\nwrite_dataset src: /HealthyOutcome.sedml/plot_1_task1 to tgt: /HealthyOutcome.sedml/plot_1_task1, shape: (9, 101), type: float64\niterating over chunks for /HealthyOutcome.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 101, 1))\ndone with dataload for /HealthyOutcome.sedml/plot_1_task1\nwrite_dataset src: /SepticDeath.sedml/autogen_report_for_task1 to tgt: /SepticDeath.sedml/autogen_report_for_task1, shape: (41, 101), type: float64\niterating over chunks for /SepticDeath.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 41, 1), slice(0, 101, 1))\ndone with dataload for /SepticDeath.sedml/autogen_report_for_task1\nwrite_dataset src: /SepticDeath.sedml/plot_1_task1 to tgt: /SepticDeath.sedml/plot_1_task1, shape: (9, 101), type: float64\niterating over chunks for /SepticDeath.sedml/plot_1_task1\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 101, 1))\ndone with dataload for /SepticDeath.sedml/plot_1_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/64711c8e0dcacb55678ccdf3\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":3.547879,"sedDocuments":[{"location":"AsepticDeath.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 3 SED-ML documents with 3 models, 3 simulations, 3 tasks, 3 reports, and 3 plots:\r\n  AsepticDeath.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 41 data sets\r\n    Plots (1):\r\n      plot_1_task1: 8 curves\r\n  HealthyOutcome.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 41 data sets\r\n    Plots (1):\r\n      plot_1_task1: 8 curves\r\n  SepticDeath.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 41 data sets\r\n    Plots (1):\r\n      plot_1_task1: 8 curves\r\n\r\nExecuting SED-ML file 1: AsepticDeath.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":1.026979,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.255083,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.428228,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"},{"id":"p1_curve_4_task1","status":"SUCCEEDED"},{"id":"p1_curve_5_task1","status":"SUCCEEDED"},{"id":"p1_curve_6_task1","status":"SUCCEEDED"},{"id":"p1_curve_7_task1","status":"SUCCEEDED"},{"id":"p1_curve_8_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.110587,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_P","status":"SUCCEEDED"},{"id":"autogen_task1_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_D","status":"SUCCEEDED"},{"id":"autogen_task1_C_A","status":"SUCCEEDED"},{"id":"autogen_task1_f_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_f_s_f_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_R","status":"SUCCEEDED"},{"id":"autogen_task1_f_Nstar__k_cnd_D","status":"SUCCEEDED"},{"id":"autogen_task1_k_pm","status":"SUCCEEDED"},{"id":"autogen_task1_k_mp","status":"SUCCEEDED"},{"id":"autogen_task1_s_m","status":"SUCCEEDED"},{"id":"autogen_task1_mu_m","status":"SUCCEEDED"},{"id":"autogen_task1_k_pg","status":"SUCCEEDED"},{"id":"autogen_task1_p_inf","status":"SUCCEEDED"},{"id":"autogen_task1_k_pn","status":"SUCCEEDED"},{"id":"autogen_task1_k_np","status":"SUCCEEDED"},{"id":"autogen_task1_k_nn","status":"SUCCEEDED"},{"id":"autogen_task1_s_nr","status":"SUCCEEDED"},{"id":"autogen_task1_mu_nr","status":"SUCCEEDED"},{"id":"autogen_task1_mu_n","status":"SUCCEEDED"},{"id":"autogen_task1_k_nd","status":"SUCCEEDED"},{"id":"autogen_task1_k_dn","status":"SUCCEEDED"},{"id":"autogen_task1_x_dn","status":"SUCCEEDED"},{"id":"autogen_task1_mu_d","status":"SUCCEEDED"},{"id":"autogen_task1_c_inf","status":"SUCCEEDED"},{"id":"autogen_task1_s_c","status":"SUCCEEDED"},{"id":"autogen_task1_k_cn","status":"SUCCEEDED"},{"id":"autogen_task1_k_cnd","status":"SUCCEEDED"},{"id":"autogen_task1_mu_c","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_1","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_2","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_3","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_4","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_5","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_6","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_7","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_8","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_9","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_10","status":"SUCCEEDED"}]}]},{"location":"HealthyOutcome.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: HealthyOutcome.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.763054,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.140538,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.24683,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"},{"id":"p1_curve_4_task1","status":"SUCCEEDED"},{"id":"p1_curve_5_task1","status":"SUCCEEDED"},{"id":"p1_curve_6_task1","status":"SUCCEEDED"},{"id":"p1_curve_7_task1","status":"SUCCEEDED"},{"id":"p1_curve_8_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.119962,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_P","status":"SUCCEEDED"},{"id":"autogen_task1_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_D","status":"SUCCEEDED"},{"id":"autogen_task1_C_A","status":"SUCCEEDED"},{"id":"autogen_task1_f_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_f_s_f_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_R","status":"SUCCEEDED"},{"id":"autogen_task1_f_Nstar__k_cnd_D","status":"SUCCEEDED"},{"id":"autogen_task1_k_pm","status":"SUCCEEDED"},{"id":"autogen_task1_k_mp","status":"SUCCEEDED"},{"id":"autogen_task1_s_m","status":"SUCCEEDED"},{"id":"autogen_task1_mu_m","status":"SUCCEEDED"},{"id":"autogen_task1_k_pg","status":"SUCCEEDED"},{"id":"autogen_task1_p_inf","status":"SUCCEEDED"},{"id":"autogen_task1_k_pn","status":"SUCCEEDED"},{"id":"autogen_task1_k_np","status":"SUCCEEDED"},{"id":"autogen_task1_k_nn","status":"SUCCEEDED"},{"id":"autogen_task1_s_nr","status":"SUCCEEDED"},{"id":"autogen_task1_mu_nr","status":"SUCCEEDED"},{"id":"autogen_task1_mu_n","status":"SUCCEEDED"},{"id":"autogen_task1_k_nd","status":"SUCCEEDED"},{"id":"autogen_task1_k_dn","status":"SUCCEEDED"},{"id":"autogen_task1_x_dn","status":"SUCCEEDED"},{"id":"autogen_task1_mu_d","status":"SUCCEEDED"},{"id":"autogen_task1_c_inf","status":"SUCCEEDED"},{"id":"autogen_task1_s_c","status":"SUCCEEDED"},{"id":"autogen_task1_k_cn","status":"SUCCEEDED"},{"id":"autogen_task1_k_cnd","status":"SUCCEEDED"},{"id":"autogen_task1_mu_c","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_1","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_2","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_3","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_4","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_5","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_6","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_7","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_8","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_9","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_10","status":"SUCCEEDED"}]}]},{"location":"SepticDeath.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 3: SepticDeath.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_report_for_task1`\r\n      `plot_1_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `plot_1_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_report_for_task1` ...","duration":0.720735,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.137959,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"simulate"},{"key":"solver","value":"cvode"},{"key":"relative_tolerance","value":0.000001},{"key":"absolute_tolerance","value":1e-12},{"key":"stiff","value":true},{"key":"maximum_bdf_order","value":5},{"key":"maximum_adams_order","value":12},{"key":"maximum_num_steps","value":20000},{"key":"maximum_time_step","value":0},{"key":"minimum_time_step","value":0},{"key":"initial_time_step","value":0},{"key":"multiple_steps","value":false},{"key":"variable_step_size","value":false},{"key":"max_output_rows","value":100000}]}],"outputs":[{"id":"plot_1_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.235067,"curves":[{"id":"p1_curve_1_task1","status":"SUCCEEDED"},{"id":"p1_curve_2_task1","status":"SUCCEEDED"},{"id":"p1_curve_3_task1","status":"SUCCEEDED"},{"id":"p1_curve_4_task1","status":"SUCCEEDED"},{"id":"p1_curve_5_task1","status":"SUCCEEDED"},{"id":"p1_curve_6_task1","status":"SUCCEEDED"},{"id":"p1_curve_7_task1","status":"SUCCEEDED"},{"id":"p1_curve_8_task1","status":"SUCCEEDED"}]},{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.092471,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_P","status":"SUCCEEDED"},{"id":"autogen_task1_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_D","status":"SUCCEEDED"},{"id":"autogen_task1_C_A","status":"SUCCEEDED"},{"id":"autogen_task1_f_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_f_s_f_Nstar","status":"SUCCEEDED"},{"id":"autogen_task1_R","status":"SUCCEEDED"},{"id":"autogen_task1_f_Nstar__k_cnd_D","status":"SUCCEEDED"},{"id":"autogen_task1_k_pm","status":"SUCCEEDED"},{"id":"autogen_task1_k_mp","status":"SUCCEEDED"},{"id":"autogen_task1_s_m","status":"SUCCEEDED"},{"id":"autogen_task1_mu_m","status":"SUCCEEDED"},{"id":"autogen_task1_k_pg","status":"SUCCEEDED"},{"id":"autogen_task1_p_inf","status":"SUCCEEDED"},{"id":"autogen_task1_k_pn","status":"SUCCEEDED"},{"id":"autogen_task1_k_np","status":"SUCCEEDED"},{"id":"autogen_task1_k_nn","status":"SUCCEEDED"},{"id":"autogen_task1_s_nr","status":"SUCCEEDED"},{"id":"autogen_task1_mu_nr","status":"SUCCEEDED"},{"id":"autogen_task1_mu_n","status":"SUCCEEDED"},{"id":"autogen_task1_k_nd","status":"SUCCEEDED"},{"id":"autogen_task1_k_dn","status":"SUCCEEDED"},{"id":"autogen_task1_x_dn","status":"SUCCEEDED"},{"id":"autogen_task1_mu_d","status":"SUCCEEDED"},{"id":"autogen_task1_c_inf","status":"SUCCEEDED"},{"id":"autogen_task1_s_c","status":"SUCCEEDED"},{"id":"autogen_task1_k_cn","status":"SUCCEEDED"},{"id":"autogen_task1_k_cnd","status":"SUCCEEDED"},{"id":"autogen_task1_mu_c","status":"SUCCEEDED"},{"id":"autogen_task1_compartment","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_1","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_2","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_3","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_4","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_5","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_6","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_7","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_8","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_9","status":"SUCCEEDED"},{"id":"autogen_task1_reaction_10","status":"SUCCEEDED"}]}]}]}