{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    437      0 --:--:-- --:--:-- --:--:--   438\n\r100  261k  100  261k    0     0   603k      0 --:--:-- --:--:-- --:--:--  603k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 1.6 KiB/1.6 KiB (26.6 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/rawLog.txt\nCompleted 5.7 KiB/5.7 KiB (79.2 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 84%)\n  adding: outputs/BIOMD0000000202_url.sedml/ (stored 0%)\n  adding: outputs/BIOMD0000000202_url.sedml/autogen_plot_for_task1.pdf (deflated 28%)\n  adding: outputs/reports.h5 (deflated 12%)\n  adding: rawLog.txt (deflated 71%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/283.6 KiB (5.8 MiB/s) with 1 file(s) remaining\rCompleted 283.6 KiB/283.6 KiB (2.6 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/outputs/reports.h5\nCompleted 256.0 KiB/285.9 KiB (6.2 MiB/s) with 4 file(s) remaining\rCompleted 261.4 KiB/285.9 KiB (2.7 MiB/s) with 4 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/output.zip\nCompleted 261.4 KiB/285.9 KiB (2.7 MiB/s) with 3 file(s) remaining\rCompleted 270.4 KiB/285.9 KiB (2.7 MiB/s) with 3 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/outputs/plots.zip\nCompleted 270.4 KiB/285.9 KiB (2.7 MiB/s) with 2 file(s) remaining\rCompleted 273.0 KiB/285.9 KiB (2.3 MiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/rawLog.txt\nCompleted 273.0 KiB/285.9 KiB (2.3 MiB/s) with 1 file(s) remaining\rCompleted 285.9 KiB/285.9 KiB (2.3 MiB/s) with 1 file(s) remaining\rupload: outputs/BIOMD0000000202_url.sedml/autogen_plot_for_task1.pdf to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/outputs/BIOMD0000000202_url.sedml/autogen_plot_for_task1.pdf\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/BIOMD0000000202-biopax2.owl  \n  inflating: contents/BIOMD0000000202-biopax3.owl  \n  inflating: contents/BIOMD0000000202-matlab.m  \n  inflating: contents/BIOMD0000000202-octave.m  \n  inflating: contents/BIOMD0000000202.m  \n  inflating: contents/BIOMD0000000202.ode  \n  inflating: contents/BIOMD0000000202.pdf  \n  inflating: contents/BIOMD0000000202.png  \n  inflating: contents/BIOMD0000000202.svg  \n  inflating: contents/BIOMD0000000202_url.sedml  \n  inflating: contents/BIOMD0000000202_url.xml  \n  inflating: contents/curation_image.jpeg  \n  inflating: contents/curation_notes.txt  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 27.5 KiB/488.7 KiB (384.0 KiB/s) with 15 file(s) remaining\rupload: contents/BIOMD0000000202-biopax3.owl to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202-biopax3.owl\nCompleted 27.5 KiB/488.7 KiB (384.0 KiB/s) with 14 file(s) remaining\rCompleted 35.9 KiB/488.7 KiB (278.8 KiB/s) with 14 file(s) remaining\rupload: contents/BIOMD0000000202-matlab.m to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202-matlab.m\nCompleted 35.9 KiB/488.7 KiB (278.8 KiB/s) with 13 file(s) remaining\rCompleted 44.2 KiB/488.7 KiB (331.6 KiB/s) with 13 file(s) remaining\rupload: contents/BIOMD0000000202-octave.m to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202-octave.m\nCompleted 44.2 KiB/488.7 KiB (331.6 KiB/s) with 12 file(s) remaining\rCompleted 62.7 KiB/488.7 KiB (464.9 KiB/s) with 12 file(s) remaining\rupload: contents/BIOMD0000000202-biopax2.owl to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202-biopax2.owl\nCompleted 62.7 KiB/488.7 KiB (464.9 KiB/s) with 11 file(s) remaining\rCompleted 96.3 KiB/488.7 KiB (640.7 KiB/s) with 11 file(s) remaining\rupload: contents/BIOMD0000000202.svg to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202.svg\nCompleted 96.3 KiB/488.7 KiB (640.7 KiB/s) with 10 file(s) remaining\rCompleted 98.1 KiB/488.7 KiB (621.2 KiB/s) with 10 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/manifest.xml\nCompleted 98.1 KiB/488.7 KiB (621.2 KiB/s) with 9 file(s) remaining\rCompleted 103.6 KiB/488.7 KiB (633.8 KiB/s) with 9 file(s) remaining\rupload: contents/BIOMD0000000202.ode to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202.ode\nCompleted 103.6 KiB/488.7 KiB (633.8 KiB/s) with 8 file(s) remaining\rCompleted 134.1 KiB/488.7 KiB (790.5 KiB/s) with 8 file(s) remaining\rupload: contents/curation_image.jpeg to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/curation_image.jpeg\nCompleted 134.1 KiB/488.7 KiB (790.5 KiB/s) with 7 file(s) remaining\rCompleted 328.7 KiB/488.7 KiB (1.7 MiB/s) with 7 file(s) remaining  \rupload: contents/BIOMD0000000202.pdf to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202.pdf\nCompleted 328.7 KiB/488.7 KiB (1.7 MiB/s) with 6 file(s) remaining\rCompleted 328.8 KiB/488.7 KiB (1.7 MiB/s) with 6 file(s) remaining\rupload: contents/curation_notes.txt to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/curation_notes.txt\nCompleted 328.8 KiB/488.7 KiB (1.7 MiB/s) with 5 file(s) remaining\rCompleted 331.0 KiB/488.7 KiB (1.7 MiB/s) with 5 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/metadata.rdf\nCompleted 331.0 KiB/488.7 KiB (1.7 MiB/s) with 4 file(s) remaining\rCompleted 339.4 KiB/488.7 KiB (1.7 MiB/s) with 4 file(s) remaining\rupload: contents/BIOMD0000000202.m to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202.m\nCompleted 339.4 KiB/488.7 KiB (1.7 MiB/s) with 3 file(s) remaining\rCompleted 372.4 KiB/488.7 KiB (1.8 MiB/s) with 3 file(s) remaining\rupload: contents/BIOMD0000000202_url.xml to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202_url.xml\nCompleted 372.4 KiB/488.7 KiB (1.8 MiB/s) with 2 file(s) remaining\rCompleted 453.6 KiB/488.7 KiB (2.1 MiB/s) with 2 file(s) remaining\rupload: contents/BIOMD0000000202.png to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202.png\nCompleted 453.6 KiB/488.7 KiB (2.1 MiB/s) with 1 file(s) remaining\rCompleted 488.7 KiB/488.7 KiB (2.0 MiB/s) with 1 file(s) remaining\rupload: contents/BIOMD0000000202_url.sedml to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/contents/BIOMD0000000202_url.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 8.6 KiB/8.6 KiB (123.7 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6471098b9a62a8be53f781b3/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /BIOMD0000000202_url.sedml\ncreating dataset /BIOMD0000000202_url.sedml/autogen_plot_for_task1, shape: (10, 1001), type: float64\ndataset created, uuid: d-8d079e5b-05c4bf8b-25fa-f9698e-4b5f85, chunk_size: (10, 1001)\ncreating dataset /BIOMD0000000202_url.sedml/autogen_report_for_task1, shape: (66, 1001), type: float64\ndataset created, uuid: d-8d079e5b-05c4bf8b-5761-2f7310-5a41cc, chunk_size: (66, 1001)\ncreating attribute combineArchiveLocation in /BIOMD0000000202_url.sedml\ncreating attribute uri in /BIOMD0000000202_url.sedml\ncreating attribute _type in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetDataTypes in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetIds in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetLabels in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetNames in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlDataSetShapes in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlId in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute sedmlName in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute uri in /BIOMD0000000202_url.sedml/autogen_plot_for_task1\ncreating attribute _type in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetDataTypes in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetIds in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetLabels in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetNames in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute sedmlDataSetShapes in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute sedmlId in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute sedmlName in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreating attribute uri in /BIOMD0000000202_url.sedml/autogen_report_for_task1\ncreate_links: /\ngot link: BIOMD0000000202_url.sedml\ncreate_links: /BIOMD0000000202_url.sedml\ngot link: autogen_plot_for_task1\ngot link: autogen_report_for_task1\nwrite_dataset src: /BIOMD0000000202_url.sedml/autogen_plot_for_task1 to tgt: /BIOMD0000000202_url.sedml/autogen_plot_for_task1, shape: (10, 1001), type: float64\niterating over chunks for /BIOMD0000000202_url.sedml/autogen_plot_for_task1\nwriting dataset data for slice: (slice(0, 10, 1), slice(0, 1001, 1))\ndone with dataload for /BIOMD0000000202_url.sedml/autogen_plot_for_task1\nwrite_dataset src: /BIOMD0000000202_url.sedml/autogen_report_for_task1 to tgt: /BIOMD0000000202_url.sedml/autogen_report_for_task1, shape: (66, 1001), type: float64\niterating over chunks for /BIOMD0000000202_url.sedml/autogen_report_for_task1\nwriting dataset data for slice: (slice(0, 66, 1), slice(0, 1001, 1))\ndone with dataload for /BIOMD0000000202_url.sedml/autogen_report_for_task1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6471098b9a62a8be53f781b3\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":1.901686,"sedDocuments":[{"location":"BIOMD0000000202_url.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 1 plots:\r\n  BIOMD0000000202_url.sedml:\r\n    Tasks (1):\r\n      task1\r\n    Reports (1):\r\n      autogen_report_for_task1: 66 data sets\r\n    Plots (1):\r\n      autogen_plot_for_task1: 9 curves\r\n\r\nExecuting SED-ML file 1: BIOMD0000000202_url.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task1`\r\n    Outputs:\r\n      `autogen_plot_for_task1`\r\n      `autogen_report_for_task1`\r\n  Executing task 1: `task1`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `autogen_report_for_task1` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `autogen_plot_for_task1` ...","duration":1.426582,"tasks":[{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.201081,"algorithm":"KISAO_0000560","simulatorDetails":[{"key":"methodName","value":"deterministic"},{"key":"methodCode","value":22},{"key":"parameters"}]}],"outputs":[{"id":"autogen_report_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.526353,"dataSets":[{"id":"autogen_time_for_task1","status":"SUCCEEDED"},{"id":"autogen_task1_Ca_Cyt","status":"SUCCEEDED"},{"id":"autogen_task1_IP3_Cyt","status":"SUCCEEDED"},{"id":"autogen_task1_Ca_ER","status":"SUCCEEDED"},{"id":"autogen_task1_S2","status":"SUCCEEDED"},{"id":"autogen_task1_S2a","status":"SUCCEEDED"},{"id":"autogen_task1_S4","status":"SUCCEEDED"},{"id":"autogen_task1_Oc","status":"SUCCEEDED"},{"id":"autogen_task1_O_o","status":"SUCCEEDED"},{"id":"autogen_task1_Orai1","status":"SUCCEEDED"},{"id":"autogen_task1_L","status":"SUCCEEDED"},{"id":"autogen_task1_P_IP3R","status":"SUCCEEDED"},{"id":"autogen_task1_Ki","status":"SUCCEEDED"},{"id":"autogen_task1_k_i","status":"SUCCEEDED"},{"id":"autogen_task1_Ka","status":"SUCCEEDED"},{"id":"autogen_task1_V_SERCA","status":"SUCCEEDED"},{"id":"autogen_task1_p","status":"SUCCEEDED"},{"id":"autogen_task1_K_SERCA","status":"SUCCEEDED"},{"id":"autogen_task1_k_soc","status":"SUCCEEDED"},{"id":"autogen_task1_V_PMleak","status":"SUCCEEDED"},{"id":"autogen_task1_Ca_ec","status":"SUCCEEDED"},{"id":"autogen_task1_V_PMCA","status":"SUCCEEDED"},{"id":"autogen_task1_q","status":"SUCCEEDED"},{"id":"autogen_task1_K_PMCA","status":"SUCCEEDED"},{"id":"autogen_task1_V_PLC","status":"SUCCEEDED"},{"id":"autogen_task1_K_PLC","status":"SUCCEEDED"},{"id":"autogen_task1_kdeg","status":"SUCCEEDED"},{"id":"autogen_task1_K_deg","status":"SUCCEEDED"},{"id":"autogen_task1_A","status":"SUCCEEDED"},{"id":"autogen_task1_Kd","status":"SUCCEEDED"},{"id":"autogen_task1_K1","status":"SUCCEEDED"},{"id":"autogen_task1_St","status":"SUCCEEDED"},{"id":"autogen_task1_k_a","status":"SUCCEEDED"},{"id":"autogen_task1_Vs4","status":"SUCCEEDED"},{"id":"autogen_task1_K2","status":"SUCCEEDED"},{"id":"autogen_task1_kd_oligo","status":"SUCCEEDED"},{"id":"autogen_task1_Vcp","status":"SUCCEEDED"},{"id":"autogen_task1_n_hill","status":"SUCCEEDED"},{"id":"autogen_task1_Kc","status":"SUCCEEDED"},{"id":"autogen_task1_kdc","status":"SUCCEEDED"},{"id":"autogen_task1_kop","status":"SUCCEEDED"},{"id":"autogen_task1_l_hill","status":"SUCCEEDED"},{"id":"autogen_task1_Ko","status":"SUCCEEDED"},{"id":"autogen_task1_kod","status":"SUCCEEDED"},{"id":"autogen_task1_kdo","status":"SUCCEEDED"},{"id":"autogen_task1_r_hill","status":"SUCCEEDED"},{"id":"autogen_task1_h","status":"SUCCEEDED"},{"id":"autogen_task1_Orai1_t","status":"SUCCEEDED"},{"id":"autogen_task1_Cytoplasm","status":"SUCCEEDED"},{"id":"autogen_task1_ER","status":"SUCCEEDED"},{"id":"autogen_task1_PM","status":"SUCCEEDED"},{"id":"autogen_task1_ER_Channel","status":"SUCCEEDED"},{"id":"autogen_task1_SERCA","status":"SUCCEEDED"},{"id":"autogen_task1_PM_Channel","status":"SUCCEEDED"},{"id":"autogen_task1_PMCA","status":"SUCCEEDED"},{"id":"autogen_task1_PLC","status":"SUCCEEDED"},{"id":"autogen_task1_deg","status":"SUCCEEDED"},{"id":"autogen_task1_act_apoSTIM1_syn","status":"SUCCEEDED"},{"id":"autogen_task1_act_apoSTIM1_deg","status":"SUCCEEDED"},{"id":"autogen_task1_apoSTIM1_oligo_syn","status":"SUCCEEDED"},{"id":"autogen_task1_apoSTIM1_oligo_deg","status":"SUCCEEDED"},{"id":"autogen_task1_close_CRAC_prod","status":"SUCCEEDED"},{"id":"autogen_task1_closed_CRAC_channel_deg","status":"SUCCEEDED"},{"id":"autogen_task1_open_CRAC_channel_prod","status":"SUCCEEDED"},{"id":"autogen_task1_open_to_closed","status":"SUCCEEDED"},{"id":"autogen_task1_open_CRAC_channel_deg","status":"SUCCEEDED"}]},{"id":"autogen_plot_for_task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.507109,"curves":[{"id":"autogen_curve_task1_Ca_Cyt","status":"SUCCEEDED"},{"id":"autogen_curve_task1_IP3_Cyt","status":"SUCCEEDED"},{"id":"autogen_curve_task1_Ca_ER","status":"SUCCEEDED"},{"id":"autogen_curve_task1_S2","status":"SUCCEEDED"},{"id":"autogen_curve_task1_S2a","status":"SUCCEEDED"},{"id":"autogen_curve_task1_S4","status":"SUCCEEDED"},{"id":"autogen_curve_task1_Oc","status":"SUCCEEDED"},{"id":"autogen_curve_task1_O_o","status":"SUCCEEDED"},{"id":"autogen_curve_task1_Orai1","status":"SUCCEEDED"}]}]}]}