{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n % Total % Received % Xferd Average Speed Time Time Time Current\n Dload Upload Total Spent Left Speed\n\r 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0\r100 139 100 139 0 0 407 0 --:--:-- --:--:-- --:--:-- 407\n\r100 131k 100 131k 0 0 278k 0 --:--:-- --:--:-- --:--:-- 278k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO: Using cached SIF image\nTraceback (most recent call last):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 247, in \n if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 213, in update_paths\n update_scripts(scripts_dir, new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 125, in update_scripts\n update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 118, in update_script\n with open(script_filename, 'w') as f:\nOSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive may be invalid.\n - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The changes of the model may be invalid.\n - Change 1 may be invalid.\n - XPath could not be validated.\n - Change 2 may be invalid.\n - XPath could not be validated.\n - Change 3 may be invalid.\n - XPath could not be validated.\n - Change 4 may be invalid.\n - XPath could not be validated.\n - Change 5 may be invalid.\n - XPath could not be validated.\n - Change 6 may be invalid.\n - XPath could not be validated.\n - Change 7 may be invalid.\n - XPath could not be validated.\n - Change 8 may be invalid.\n - XPath could not be validated.\n - Change 9 may be invalid.\n - XPath could not be validated.\n - Change 10 may be invalid.\n - XPath could not be validated.\n - Change 11 may be invalid.\n - XPath could not be validated.\n - Change 12 may be invalid.\n - XPath could not be validated.\n - Change 13 may be invalid.\n - XPath could not be validated.\n - Change 14 may be invalid.\n - XPath could not be validated.\n - Change 15 may be invalid.\n - XPath could not be validated.\n - Change 16 may be invalid.\n - XPath could not be validated.\n - Change 17 may be invalid.\n - XPath could not be validated.\n - Change 18 may be invalid.\n - XPath could not be validated.\n - Change 19 may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n - Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p1` may be invalid.\n - Variable `value_component_SERCA_variable_k_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p2` may be invalid.\n - Variable `value_component_SERCA_variable_k_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p3` may be invalid.\n - Variable `value_component_SERCA_variable_k_p3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m1` may be invalid.\n - Variable `value_component_SERCA_variable_k_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m2` may be invalid.\n - Variable `value_component_SERCA_variable_k_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m3` may be invalid.\n - Variable `value_component_SERCA_variable_k_m3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcai` may be invalid.\n - Variable `value_component_SERCA_variable_kdcai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcasr` may be invalid.\n - Variable `value_component_SERCA_variable_kdcasr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh1` may be invalid.\n - Variable `value_component_SERCA_variable_kdh1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhi` may be invalid.\n - Variable `value_component_SERCA_variable_kdhi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhsr` may be invalid.\n - Variable `value_component_SERCA_variable_kdhsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh` may be invalid.\n - Variable `value_component_SERCA_variable_kdh` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_n` may be invalid.\n - Variable `value_component_SERCA_variable_n` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_i` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_sr` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_sr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_H_i` may be invalid.\n - Variable `value_component_SERCA_variable_H_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ATP` may be invalid.\n - Variable `value_component_SERCA_variable_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ADP` may be invalid.\n - Variable `value_component_SERCA_variable_ADP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_P_i` may be invalid.\n - Variable `value_component_SERCA_variable_P_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Cai` may be invalid.\n - Variable `value_component_SERCA_variable_T_Cai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Casr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Casr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H1` may be invalid.\n - Variable `value_component_SERCA_variable_T_H1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hi` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hsr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H` may be invalid.\n - Variable `value_component_SERCA_variable_T_H` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p1` may be invalid.\n - Variable `value_component_SERCA_variable_a_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p2` may be invalid.\n - Variable `value_component_SERCA_variable_a_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p3` may be invalid.\n - Variable `value_component_SERCA_variable_a_p3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m1` may be invalid.\n - Variable `value_component_SERCA_variable_a_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m2` may be invalid.\n - Variable `value_component_SERCA_variable_a_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m3` may be invalid.\n - Variable `value_component_SERCA_variable_a_m3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s1` may be invalid.\n - Variable `value_component_SERCA_variable_s1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s2` may be invalid.\n - Variable `value_component_SERCA_variable_s2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s3` may be invalid.\n - Variable `value_component_SERCA_variable_s3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_v_cycle` may be invalid.\n - Variable `value_component_SERCA_variable_v_cycle` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The changes of the model may be invalid.\n - Change 1 may be invalid.\n - XPath could not be validated.\n - Change 2 may be invalid.\n - XPath could not be validated.\n - Change 3 may be invalid.\n - XPath could not be validated.\n - Change 4 may be invalid.\n - XPath could not be validated.\n - Change 5 may be invalid.\n - XPath could not be validated.\n - Change 6 may be invalid.\n - XPath could not be validated.\n - Change 7 may be invalid.\n - XPath could not be validated.\n - Change 8 may be invalid.\n - XPath could not be validated.\n - Change 9 may be invalid.\n - XPath could not be validated.\n - Change 10 may be invalid.\n - XPath could not be validated.\n - Change 11 may be invalid.\n - XPath could not be validated.\n - Change 12 may be invalid.\n - XPath could not be validated.\n - Change 13 may be invalid.\n - XPath could not be validated.\n - Change 14 may be invalid.\n - XPath could not be validated.\n - Change 15 may be invalid.\n - XPath could not be validated.\n - Change 16 may be invalid.\n - XPath could not be validated.\n - Change 17 may be invalid.\n - XPath could not be validated.\n - Change 18 may be invalid.\n - XPath could not be validated.\n - Change 19 may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n - Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p1` may be invalid.\n - Variable `value_component_SERCA_variable_k_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p2` may be invalid.\n - Variable `value_component_SERCA_variable_k_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p3` may be invalid.\n - Variable `value_component_SERCA_variable_k_p3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m1` may be invalid.\n - Variable `value_component_SERCA_variable_k_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m2` may be invalid.\n - Variable `value_component_SERCA_variable_k_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m3` may be invalid.\n - Variable `value_component_SERCA_variable_k_m3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdatp` may be invalid.\n - Variable `value_component_SERCA_variable_kdatp` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcai` may be invalid.\n - Variable `value_component_SERCA_variable_kdcai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcasr` may be invalid.\n - Variable `value_component_SERCA_variable_kdcasr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh1` may be invalid.\n - Variable `value_component_SERCA_variable_kdh1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhi` may be invalid.\n - Variable `value_component_SERCA_variable_kdhi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhsr` may be invalid.\n - Variable `value_component_SERCA_variable_kdhsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh` may be invalid.\n - Variable `value_component_SERCA_variable_kdh` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_n` may be invalid.\n - Variable `value_component_SERCA_variable_n` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_i` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_sr` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_sr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_H_i` may be invalid.\n - Variable `value_component_SERCA_variable_H_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ATP` may be invalid.\n - Variable `value_component_SERCA_variable_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ADP` may be invalid.\n - Variable `value_component_SERCA_variable_ADP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_P_i` may be invalid.\n - Variable `value_component_SERCA_variable_P_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_ATP` may be invalid.\n - Variable `value_component_SERCA_variable_T_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Cai` may be invalid.\n - Variable `value_component_SERCA_variable_T_Cai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Casr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Casr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H1` may be invalid.\n - Variable `value_component_SERCA_variable_T_H1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hi` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hsr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H` may be invalid.\n - Variable `value_component_SERCA_variable_T_H` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p1` may be invalid.\n - Variable `value_component_SERCA_variable_a_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p2` may be invalid.\n - Variable `value_component_SERCA_variable_a_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m1` may be invalid.\n - Variable `value_component_SERCA_variable_a_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m2` may be invalid.\n - Variable `value_component_SERCA_variable_a_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s2` may be invalid.\n - Variable `value_component_SERCA_variable_s2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_v_cycle` may be invalid.\n - Variable `value_component_SERCA_variable_v_cycle` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\n - The SED-ML file at location `simulation_0.sedml` may be invalid.\n - Model `model` may be invalid.\n - The changes of the model may be invalid.\n - Change 1 may be invalid.\n - XPath could not be validated.\n - Change 2 may be invalid.\n - XPath could not be validated.\n - Change 3 may be invalid.\n - XPath could not be validated.\n - Change 4 may be invalid.\n - XPath could not be validated.\n - Change 5 may be invalid.\n - XPath could not be validated.\n - Change 6 may be invalid.\n - XPath could not be validated.\n - Change 7 may be invalid.\n - XPath could not be validated.\n - Change 8 may be invalid.\n - XPath could not be validated.\n - Change 9 may be invalid.\n - XPath could not be validated.\n - Change 10 may be invalid.\n - XPath could not be validated.\n - Change 11 may be invalid.\n - XPath could not be validated.\n - Change 12 may be invalid.\n - XPath could not be validated.\n - Change 13 may be invalid.\n - XPath could not be validated.\n - Change 14 may be invalid.\n - XPath could not be validated.\n - Change 15 may be invalid.\n - XPath could not be validated.\n - Change 16 may be invalid.\n - XPath could not be validated.\n - Change 17 may be invalid.\n - XPath could not be validated.\n - Change 18 may be invalid.\n - XPath could not be validated.\n - Change 19 may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n - Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p1` may be invalid.\n - Variable `value_component_SERCA_variable_k_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p2` may be invalid.\n - Variable `value_component_SERCA_variable_k_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p3` may be invalid.\n - Variable `value_component_SERCA_variable_k_p3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m1` may be invalid.\n - Variable `value_component_SERCA_variable_k_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m2` may be invalid.\n - Variable `value_component_SERCA_variable_k_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m3` may be invalid.\n - Variable `value_component_SERCA_variable_k_m3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcai` may be invalid.\n - Variable `value_component_SERCA_variable_kdcai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcasr` may be invalid.\n - Variable `value_component_SERCA_variable_kdcasr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh1` may be invalid.\n - Variable `value_component_SERCA_variable_kdh1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhi` may be invalid.\n - Variable `value_component_SERCA_variable_kdhi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhsr` may be invalid.\n - Variable `value_component_SERCA_variable_kdhsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh` may be invalid.\n - Variable `value_component_SERCA_variable_kdh` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_n` may be invalid.\n - Variable `value_component_SERCA_variable_n` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_i` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_sr` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_sr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_H_i` may be invalid.\n - Variable `value_component_SERCA_variable_H_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ATP` may be invalid.\n - Variable `value_component_SERCA_variable_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ADP` may be invalid.\n - Variable `value_component_SERCA_variable_ADP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_P_i` may be invalid.\n - Variable `value_component_SERCA_variable_P_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Cai` may be invalid.\n - Variable `value_component_SERCA_variable_T_Cai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Casr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Casr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H1` may be invalid.\n - Variable `value_component_SERCA_variable_T_H1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hi` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hsr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H` may be invalid.\n - Variable `value_component_SERCA_variable_T_H` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p1` may be invalid.\n - Variable `value_component_SERCA_variable_a_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p2` may be invalid.\n - Variable `value_component_SERCA_variable_a_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p3` may be invalid.\n - Variable `value_component_SERCA_variable_a_p3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m1` may be invalid.\n - Variable `value_component_SERCA_variable_a_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m2` may be invalid.\n - Variable `value_component_SERCA_variable_a_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m3` may be invalid.\n - Variable `value_component_SERCA_variable_a_m3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s1` may be invalid.\n - Variable `value_component_SERCA_variable_s1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s2` may be invalid.\n - Variable `value_component_SERCA_variable_s2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s3` may be invalid.\n - Variable `value_component_SERCA_variable_s3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_v_cycle` may be invalid.\n - Variable `value_component_SERCA_variable_v_cycle` may be invalid.\n - XPath could not be validated.\n - The SED-ML file at location `simulation_1.sedml` may be invalid.\n - Model `model` may be invalid.\n - The changes of the model may be invalid.\n - Change 1 may be invalid.\n - XPath could not be validated.\n - Change 2 may be invalid.\n - XPath could not be validated.\n - Change 3 may be invalid.\n - XPath could not be validated.\n - Change 4 may be invalid.\n - XPath could not be validated.\n - Change 5 may be invalid.\n - XPath could not be validated.\n - Change 6 may be invalid.\n - XPath could not be validated.\n - Change 7 may be invalid.\n - XPath could not be validated.\n - Change 8 may be invalid.\n - XPath could not be validated.\n - Change 9 may be invalid.\n - XPath could not be validated.\n - Change 10 may be invalid.\n - XPath could not be validated.\n - Change 11 may be invalid.\n - XPath could not be validated.\n - Change 12 may be invalid.\n - XPath could not be validated.\n - Change 13 may be invalid.\n - XPath could not be validated.\n - Change 14 may be invalid.\n - XPath could not be validated.\n - Change 15 may be invalid.\n - XPath could not be validated.\n - Change 16 may be invalid.\n - XPath could not be validated.\n - Change 17 may be invalid.\n - XPath could not be validated.\n - Change 18 may be invalid.\n - XPath could not be validated.\n - Change 19 may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n - Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p1` may be invalid.\n - Variable `value_component_SERCA_variable_k_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p2` may be invalid.\n - Variable `value_component_SERCA_variable_k_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_p3` may be invalid.\n - Variable `value_component_SERCA_variable_k_p3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m1` may be invalid.\n - Variable `value_component_SERCA_variable_k_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m2` may be invalid.\n - Variable `value_component_SERCA_variable_k_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_k_m3` may be invalid.\n - Variable `value_component_SERCA_variable_k_m3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdatp` may be invalid.\n - Variable `value_component_SERCA_variable_kdatp` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcai` may be invalid.\n - Variable `value_component_SERCA_variable_kdcai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdcasr` may be invalid.\n - Variable `value_component_SERCA_variable_kdcasr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh1` may be invalid.\n - Variable `value_component_SERCA_variable_kdh1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhi` may be invalid.\n - Variable `value_component_SERCA_variable_kdhi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdhsr` may be invalid.\n - Variable `value_component_SERCA_variable_kdhsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_kdh` may be invalid.\n - Variable `value_component_SERCA_variable_kdh` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_n` may be invalid.\n - Variable `value_component_SERCA_variable_n` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_i` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_Ca_sr` may be invalid.\n - Variable `value_component_SERCA_variable_Ca_sr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_H_i` may be invalid.\n - Variable `value_component_SERCA_variable_H_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ATP` may be invalid.\n - Variable `value_component_SERCA_variable_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_ADP` may be invalid.\n - Variable `value_component_SERCA_variable_ADP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_P_i` may be invalid.\n - Variable `value_component_SERCA_variable_P_i` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_ATP` may be invalid.\n - Variable `value_component_SERCA_variable_T_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Cai` may be invalid.\n - Variable `value_component_SERCA_variable_T_Cai` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Casr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Casr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H1` may be invalid.\n - Variable `value_component_SERCA_variable_T_H1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hi` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hi` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_Hsr` may be invalid.\n - Variable `value_component_SERCA_variable_T_Hsr` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_T_H` may be invalid.\n - Variable `value_component_SERCA_variable_T_H` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p1` may be invalid.\n - Variable `value_component_SERCA_variable_a_p1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_p2` may be invalid.\n - Variable `value_component_SERCA_variable_a_p2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m1` may be invalid.\n - Variable `value_component_SERCA_variable_a_m1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_a_m2` may be invalid.\n - Variable `value_component_SERCA_variable_a_m2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_s2` may be invalid.\n - Variable `value_component_SERCA_variable_s2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SERCA_variable_v_cycle` may be invalid.\n - Variable `value_component_SERCA_variable_v_cycle` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\nArchive contains 2 SED-ML documents with 2 models, 2 simulations, 2 tasks, 2 reports, and 0 plots:\n simulation_0.sedml:\n Tasks (1):\n task\n Reports (1):\n report: 36 data sets\n simulation_1.sedml:\n Tasks (1):\n task\n Reports (1):\n report: 34 data sets\n\nExecuting SED-ML file 1: simulation_0.sedml ...\nExecuting SED-ML file 2: simulation_1.sedml ...\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 2 SED documents:\n SED documents (2):\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Tasks (2):\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs (2):\n Succeeded: 2\n Skipped: 0\n Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 36.8 KiB/36.8 KiB (452.2 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/rawLog.txt\nCompleted 53.2 KiB/53.2 KiB (454.2 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n adding: outputs/ (stored 0%)\n adding: outputs/log.yml (deflated 95%)\n adding: outputs/reports.h5 (deflated 88%)\n adding: rawLog.txt (deflated 94%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 42.4 KiB/42.4 KiB (315.0 KiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/outputs/reports.h5\nCompleted 10.8 KiB/48.5 KiB (99.6 KiB/s) with 2 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/output.zip\nCompleted 10.8 KiB/48.5 KiB (99.6 KiB/s) with 1 file(s) remaining\rCompleted 48.5 KiB/48.5 KiB (354.0 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive: archive.omex\n inflating: contents/tran_smith_loiselle_crampin_2009.session.xml \n inflating: contents/tran_smith_loiselle_crampin_2009.cellml \n inflating: contents/tran_2009.png \n inflating: contents/tran_2009.xul \n inflating: contents/tran_2009.ai \n inflating: contents/tran_smith_loiselle_crampin_2009_variant01.cellml \n inflating: contents/tran_2009.svg \n inflating: contents/tran_2009b.png \n inflating: contents/simulation_0.sedml \n inflating: contents/simulation_1.sedml \n inflating: contents/metadata.rdf \n inflating: contents/manifest.xml \nCompleted 1.4 KiB/335.5 KiB (14.8 KiB/s) with 12 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/manifest.xml\nCompleted 1.4 KiB/335.5 KiB (14.8 KiB/s) with 11 file(s) remaining\rCompleted 35.5 KiB/335.5 KiB (227.8 KiB/s) with 11 file(s) remaining\rupload: contents/simulation_0.sedml to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/simulation_0.sedml\nCompleted 35.5 KiB/335.5 KiB (227.8 KiB/s) with 10 file(s) remaining\rCompleted 57.1 KiB/335.5 KiB (358.0 KiB/s) with 10 file(s) remaining\rupload: contents/tran_smith_loiselle_crampin_2009_variant01.cellml to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_smith_loiselle_crampin_2009_variant01.cellml\nCompleted 57.1 KiB/335.5 KiB (358.0 KiB/s) with 9 file(s) remaining\rCompleted 78.0 KiB/335.5 KiB (452.7 KiB/s) with 9 file(s) remaining\rupload: contents/tran_2009b.png to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_2009b.png\nCompleted 78.0 KiB/335.5 KiB (452.7 KiB/s) with 8 file(s) remaining\rCompleted 96.7 KiB/335.5 KiB (554.2 KiB/s) with 8 file(s) remaining\rupload: contents/tran_smith_loiselle_crampin_2009.session.xml to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_smith_loiselle_crampin_2009.session.xml\nCompleted 96.7 KiB/335.5 KiB (554.2 KiB/s) with 7 file(s) remaining\rCompleted 137.1 KiB/335.5 KiB (776.3 KiB/s) with 7 file(s) remaining\rupload: contents/tran_2009.xul to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_2009.xul\nCompleted 137.1 KiB/335.5 KiB (776.3 KiB/s) with 6 file(s) remaining\rCompleted 169.5 KiB/335.5 KiB (910.1 KiB/s) with 6 file(s) remaining\rupload: contents/simulation_1.sedml to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/simulation_1.sedml\nCompleted 169.5 KiB/335.5 KiB (910.1 KiB/s) with 5 file(s) remaining\rCompleted 202.0 KiB/335.5 KiB (1.0 MiB/s) with 5 file(s) remaining \rupload: contents/tran_2009.svg to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_2009.svg\nCompleted 202.0 KiB/335.5 KiB (1.0 MiB/s) with 4 file(s) remaining\rCompleted 222.2 KiB/335.5 KiB (1.1 MiB/s) with 4 file(s) remaining\rCompleted 246.8 KiB/335.5 KiB (1.2 MiB/s) with 4 file(s) remaining\rupload: contents/tran_smith_loiselle_crampin_2009.cellml to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_smith_loiselle_crampin_2009.cellml\nCompleted 246.8 KiB/335.5 KiB (1.2 MiB/s) with 3 file(s) remaining\rupload: contents/tran_2009.png to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_2009.png\nCompleted 246.8 KiB/335.5 KiB (1.2 MiB/s) with 2 file(s) remaining\rCompleted 316.7 KiB/335.5 KiB (1.3 MiB/s) with 2 file(s) remaining\rupload: contents/tran_2009.ai to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/tran_2009.ai\nCompleted 316.7 KiB/335.5 KiB (1.3 MiB/s) with 1 file(s) remaining\rCompleted 335.5 KiB/335.5 KiB (1.2 MiB/s) with 1 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/contents/metadata.rdf\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 42.1 KiB/42.1 KiB (327.2 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261787d4679625b3246fed8/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /simulation_0.sedml\ncreating dataset /simulation_0.sedml/report, shape: (36, 11), type: float64\ndataset created, uuid: d-59c436d2-5e613d79-f2d9-05ba8c-e734aa, chunk_size: (36, 11)\ncreating group /simulation_1.sedml\ncreating dataset /simulation_1.sedml/report, shape: (34, 11), type: float64\ndataset created, uuid: d-59c436d2-5e613d79-1481-d3d306-bac46a, chunk_size: (34, 11)\ncreating attribute combineArchiveLocation in /simulation_0.sedml\ncreating attribute uri in /simulation_0.sedml\ncreating attribute _type in /simulation_0.sedml/report\ncreating attribute sedmlDataSetDataTypes in /simulation_0.sedml/report\ncreating attribute sedmlDataSetIds in /simulation_0.sedml/report\ncreating attribute sedmlDataSetLabels in /simulation_0.sedml/report\ncreating attribute sedmlDataSetNames in /simulation_0.sedml/report\ncreating attribute sedmlDataSetShapes in /simulation_0.sedml/report\ncreating attribute sedmlId in /simulation_0.sedml/report\ncreating attribute uri in /simulation_0.sedml/report\ncreating attribute combineArchiveLocation in /simulation_1.sedml\ncreating attribute uri in /simulation_1.sedml\ncreating attribute _type in /simulation_1.sedml/report\ncreating attribute sedmlDataSetDataTypes in /simulation_1.sedml/report\ncreating attribute sedmlDataSetIds in /simulation_1.sedml/report\ncreating attribute sedmlDataSetLabels in /simulation_1.sedml/report\ncreating attribute sedmlDataSetNames in /simulation_1.sedml/report\ncreating attribute sedmlDataSetShapes in /simulation_1.sedml/report\ncreating attribute sedmlId in /simulation_1.sedml/report\ncreating attribute uri in /simulation_1.sedml/report\ncreate_links: /\ngot link: simulation_0.sedml\ngot link: simulation_1.sedml\ncreate_links: /simulation_0.sedml\ngot link: report\ncreate_links: /simulation_1.sedml\ngot link: report\nwrite_dataset src: /simulation_0.sedml/report to tgt: /simulation_0.sedml/report, shape: (36, 11), type: float64\niterating over chunks for /simulation_0.sedml/report\nwriting dataset data for slice: (slice(0, 36, 1), slice(0, 11, 1))\ndone with dataload for /simulation_0.sedml/report\nwrite_dataset src: /simulation_1.sedml/report to tgt: /simulation_1.sedml/report, shape: (34, 11), type: float64\niterating over chunks for /simulation_1.sedml/report\nwriting dataset data for slice: (slice(0, 34, 1), slice(0, 11, 1))\ndone with dataload for /simulation_1.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6261787d4679625b3246fed8\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.050309,"sedDocuments":[{"location":"simulation_0.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" Found 1 tasks and 1 outputs:\n Tasks:\n `task`\n Outputs:\n `report`\n Executing task 1: `task`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\n\n Executed 1 tasks and 1 outputs:\n Tasks:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":0.830505,"tasks":[{"id":"task","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `value_component_SERCA_variable_T_H` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_s2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdh1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_m1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdcai` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_p3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_n` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_m2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdhsr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdhi` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_Ca_sr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_p2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_m2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Hi` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_ATP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_p3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdh` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_ADP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Hsr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_p2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_s3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_s1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Cai` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_H1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_Ca_i` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_v_cycle` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_m3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_m3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_m1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_P_i` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_p1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_p1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdcasr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_H_i` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Casr` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.667838,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[]}]}],"outputs":[{"id":"report","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.028517,"dataSets":[{"id":"data_set_value_component_environment_variable_time","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_p1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_p2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_p3","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_m1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_m2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_m3","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdcai","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdcasr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdh1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdhi","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdhsr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdh","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_n","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_Ca_i","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_Ca_sr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_H_i","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_ATP","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_ADP","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_P_i","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Cai","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Casr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_H1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Hi","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Hsr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_H","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_p1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_p2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_p3","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_m1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_m2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_m3","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_s1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_s2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_s3","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_v_cycle","status":"SUCCEEDED"}]}]},{"location":"simulation_1.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" Found 1 tasks and 1 outputs:\n Tasks:\n `task`\n Outputs:\n `report`\n Executing task 1: `task`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\n\n Executed 1 tasks and 1 outputs:\n Tasks:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":0.54894,"tasks":[{"id":"task","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `value_component_SERCA_variable_ADP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_Ca_sr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Cai` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_p3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdh` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_p1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdh1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_s2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_P_i` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_ATP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_v_cycle` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_m3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdcai` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_m2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdhsr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_m2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_m1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdhi` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_H_i` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Hsr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_H` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdatp` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_p1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Hi` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_p2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_Ca_i` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_ATP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_a_m1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_kdcasr` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_H1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_k_p2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_n` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SERCA_variable_T_Casr` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.384549,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[]}]}],"outputs":[{"id":"report","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.021932,"dataSets":[{"id":"data_set_value_component_environment_variable_time","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_p1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_p2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_p3","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_m1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_m2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_k_m3","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdatp","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdcai","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdcasr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdh1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdhi","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdhsr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_kdh","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_n","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_Ca_i","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_Ca_sr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_H_i","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_ATP","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_ADP","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_P_i","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_ATP","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Cai","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Casr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_H1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Hi","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_Hsr","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_T_H","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_p1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_p2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_m1","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_a_m2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_s2","status":"SUCCEEDED"},{"id":"data_set_value_component_SERCA_variable_v_cycle","status":"SUCCEEDED"}]}]}]}