{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n % Total % Received % Xferd Average Speed Time Time Time Current\n Dload Upload Total Spent Left Speed\n\r 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0\r100 139 100 139 0 0 457 0 --:--:-- --:--:-- --:--:-- 458\n\r100 2624k 100 2624k 0 0 5530k 0 --:--:-- --:--:-- --:--:-- 5530k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO: Using cached SIF image\nTraceback (most recent call last):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 247, in \n if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 213, in update_paths\n update_scripts(scripts_dir, new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 125, in update_scripts\n update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 118, in update_script\n with open(script_filename, 'w') as f:\nOSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive may be invalid.\n - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The changes of the model may be invalid.\n - Change 1 may be invalid.\n - XPath could not be validated.\n - Change 2 may be invalid.\n - XPath could not be validated.\n - Change 3 may be invalid.\n - XPath could not be validated.\n - Change 4 may be invalid.\n - XPath could not be validated.\n - Change 5 may be invalid.\n - XPath could not be validated.\n - Change 6 may be invalid.\n - XPath could not be validated.\n - Change 7 may be invalid.\n - XPath could not be validated.\n - Change 8 may be invalid.\n - XPath could not be validated.\n - Change 9 may be invalid.\n - XPath could not be validated.\n - Change 10 may be invalid.\n - XPath could not be validated.\n - Change 11 may be invalid.\n - XPath could not be validated.\n - Change 12 may be invalid.\n - XPath could not be validated.\n - Change 13 may be invalid.\n - XPath could not be validated.\n - Change 14 may be invalid.\n - XPath could not be validated.\n - Change 15 may be invalid.\n - XPath could not be validated.\n - Change 16 may be invalid.\n - XPath could not be validated.\n - Change 17 may be invalid.\n - XPath could not be validated.\n - Change 18 may be invalid.\n - XPath could not be validated.\n - Change 19 may be invalid.\n - XPath could not be validated.\n - Change 20 may be invalid.\n - XPath could not be validated.\n - Change 21 may be invalid.\n - XPath could not be validated.\n - Change 22 may be invalid.\n - XPath could not be validated.\n - Change 23 may be invalid.\n - XPath could not be validated.\n - Change 24 may be invalid.\n - XPath could not be validated.\n - Change 25 may be invalid.\n - XPath could not be validated.\n - Change 26 may be invalid.\n - XPath could not be validated.\n - Change 27 may be invalid.\n - XPath could not be validated.\n - Change 28 may be invalid.\n - XPath could not be validated.\n - Change 29 may be invalid.\n - XPath could not be validated.\n - Change 30 may be invalid.\n - XPath could not be validated.\n - Change 31 may be invalid.\n - XPath could not be validated.\n - Change 32 may be invalid.\n - XPath could not be validated.\n - Change 33 may be invalid.\n - XPath could not be validated.\n - Change 34 may be invalid.\n - XPath could not be validated.\n - Change 35 may be invalid.\n - XPath could not be validated.\n - Change 36 may be invalid.\n - XPath could not be validated.\n - Change 37 may be invalid.\n - XPath could not be validated.\n - Change 38 may be invalid.\n - XPath could not be validated.\n - Change 39 may be invalid.\n - XPath could not be validated.\n - Change 40 may be invalid.\n - XPath could not be validated.\n - Change 41 may be invalid.\n - XPath could not be validated.\n - Change 42 may be invalid.\n - XPath could not be validated.\n - Change 43 may be invalid.\n - XPath could not be validated.\n - Change 44 may be invalid.\n - XPath could not be validated.\n - Change 45 may be invalid.\n - XPath could not be validated.\n - Change 46 may be invalid.\n - XPath could not be validated.\n - Change 47 may be invalid.\n - XPath could not be validated.\n - Change 48 may be invalid.\n - XPath could not be validated.\n - Change 49 may be invalid.\n - XPath could not be validated.\n - Change 50 may be invalid.\n - XPath could not be validated.\n - Change 51 may be invalid.\n - XPath could not be validated.\n - Change 52 may be invalid.\n - XPath could not be validated.\n - Change 53 may be invalid.\n - XPath could not be validated.\n - Change 54 may be invalid.\n - XPath could not be validated.\n - Change 55 may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n - Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_NatP_variable_NatP` may be invalid.\n - Variable `value_component_NatP_variable_NatP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_variable_MisP` may be invalid.\n - Variable `value_component_MisP_variable_MisP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_Ub_variable_Ub` may be invalid.\n - Variable `value_component_Ub_variable_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E1_variable_E1` may be invalid.\n - Variable `value_component_E1_variable_E1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E2_variable_E2` may be invalid.\n - Variable `value_component_E2_variable_E2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E3_variable_E3` may be invalid.\n - Variable `value_component_E3_variable_E3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_DUB_variable_DUB` may be invalid.\n - Variable `value_component_DUB_variable_DUB` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_Proteasome_variable_Proteasome` may be invalid.\n - Variable `value_component_Proteasome_variable_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_ROS_variable_ROS` may be invalid.\n - Variable `value_component_ROS_variable_ROS` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E1_Ub_variable_E1_Ub` may be invalid.\n - Variable `value_component_E1_Ub_variable_E1_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E2_Ub_variable_E2_Ub` may be invalid.\n - Variable `value_component_E2_Ub_variable_E2_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E3_MisP_variable_E3_MisP` may be invalid.\n - Variable `value_component_E3_MisP_variable_E3_MisP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub_variable_MisP_Ub` may be invalid.\n - Variable `value_component_MisP_Ub_variable_MisP_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub2_variable_MisP_Ub2` may be invalid.\n - Variable `value_component_MisP_Ub2_variable_MisP_Ub2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub3_variable_MisP_Ub3` may be invalid.\n - Variable `value_component_MisP_Ub3_variable_MisP_Ub3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub4_variable_MisP_Ub4` may be invalid.\n - Variable `value_component_MisP_Ub4_variable_MisP_Ub4` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub5_variable_MisP_Ub5` may be invalid.\n - Variable `value_component_MisP_Ub5_variable_MisP_Ub5` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub6_variable_MisP_Ub6` may be invalid.\n - Variable `value_component_MisP_Ub6_variable_MisP_Ub6` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub7_variable_MisP_Ub7` may be invalid.\n - Variable `value_component_MisP_Ub7_variable_MisP_Ub7` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub8_variable_MisP_Ub8` may be invalid.\n - Variable `value_component_MisP_Ub8_variable_MisP_Ub8` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub4_Proteasome_variable_MisP_Ub4_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub4_Proteasome_variable_MisP_Ub4_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub5_Proteasome_variable_MisP_Ub5_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub5_Proteasome_variable_MisP_Ub5_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub6_Proteasome_variable_MisP_Ub6_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub6_Proteasome_variable_MisP_Ub6_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub7_Proteasome_variable_MisP_Ub7_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub7_Proteasome_variable_MisP_Ub7_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub8_Proteasome_variable_MisP_Ub8_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub8_Proteasome_variable_MisP_Ub8_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_ATP_variable_ATP` may be invalid.\n - Variable `value_component_ATP_variable_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_ADP_variable_ADP` may be invalid.\n - Variable `value_component_ADP_variable_ADP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_AMP_variable_AMP` may be invalid.\n - Variable `value_component_AMP_variable_AMP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb4_variable_degUb4` may be invalid.\n - Variable `value_component_degUb4_variable_degUb4` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb5_variable_degUb5` may be invalid.\n - Variable `value_component_degUb5_variable_degUb5` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb6_variable_degUb6` may be invalid.\n - Variable `value_component_degUb6_variable_degUb6` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb7_variable_degUb7` may be invalid.\n - Variable `value_component_degUb7_variable_degUb7` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb8_variable_degUb8` may be invalid.\n - Variable `value_component_degUb8_variable_degUb8` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_total_variable_MisP_total` may be invalid.\n - Variable `value_component_MisP_total_variable_MisP_total` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_NatP_refolded_variable_NatP_refolded` may be invalid.\n - Variable `value_component_NatP_refolded_variable_NatP_refolded` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_AggP_variable_AggP` may be invalid.\n - Variable `value_component_AggP_variable_AggP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SeqAggP_variable_SeqAggP` may be invalid.\n - Variable `value_component_SeqAggP_variable_SeqAggP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_AggP_Proteasome_variable_AggP_Proteasome` may be invalid.\n - Variable `value_component_AggP_Proteasome_variable_AggP_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v1_variable_v1` may be invalid.\n - Variable `value_component_v1_variable_v1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v2_variable_v2` may be invalid.\n - Variable `value_component_v2_variable_v2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v3_variable_v3` may be invalid.\n - Variable `value_component_v3_variable_v3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v4_variable_v4` may be invalid.\n - Variable `value_component_v4_variable_v4` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v5_variable_v5` may be invalid.\n - Variable `value_component_v5_variable_v5` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v6_variable_v6` may be invalid.\n - Variable `value_component_v6_variable_v6` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v7_variable_v7` may be invalid.\n - Variable `value_component_v7_variable_v7` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v8_variable_v8` may be invalid.\n - Variable `value_component_v8_variable_v8` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v9_variable_v9` may be invalid.\n - Variable `value_component_v9_variable_v9` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v10_variable_v10` may be invalid.\n - Variable `value_component_v10_variable_v10` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v11_variable_v11` may be invalid.\n - Variable `value_component_v11_variable_v11` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v12_variable_v12` may be invalid.\n - Variable `value_component_v12_variable_v12` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v13_variable_v13` may be invalid.\n - Variable `value_component_v13_variable_v13` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v14_variable_v14` may be invalid.\n - Variable `value_component_v14_variable_v14` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v15_variable_v15` may be invalid.\n - Variable `value_component_v15_variable_v15` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v16_variable_v16` may be invalid.\n - Variable `value_component_v16_variable_v16` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v17_variable_v17` may be invalid.\n - Variable `value_component_v17_variable_v17` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v18_variable_v18` may be invalid.\n - Variable `value_component_v18_variable_v18` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v19_variable_v19` may be invalid.\n - Variable `value_component_v19_variable_v19` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v20_variable_v20` may be invalid.\n - Variable `value_component_v20_variable_v20` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v21_variable_v21` may be invalid.\n - Variable `value_component_v21_variable_v21` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v22_variable_v22` may be invalid.\n - Variable `value_component_v22_variable_v22` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v23_variable_v23` may be invalid.\n - Variable `value_component_v23_variable_v23` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v24_variable_v24` may be invalid.\n - Variable `value_component_v24_variable_v24` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v25_variable_v25` may be invalid.\n - Variable `value_component_v25_variable_v25` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v26_variable_v26` may be invalid.\n - Variable `value_component_v26_variable_v26` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v27_variable_v27` may be invalid.\n - Variable `value_component_v27_variable_v27` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v28_variable_v28` may be invalid.\n - Variable `value_component_v28_variable_v28` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v29_variable_v29` may be invalid.\n - Variable `value_component_v29_variable_v29` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v30_variable_v30` may be invalid.\n - Variable `value_component_v30_variable_v30` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v31_variable_v31` may be invalid.\n - Variable `value_component_v31_variable_v31` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v32_variable_v32` may be invalid.\n - Variable `value_component_v32_variable_v32` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v33_variable_v33` may be invalid.\n - Variable `value_component_v33_variable_v33` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v34_variable_v34` may be invalid.\n - Variable `value_component_v34_variable_v34` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v35_variable_v35` may be invalid.\n - Variable `value_component_v35_variable_v35` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v36_variable_v36` may be invalid.\n - Variable `value_component_v36_variable_v36` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v37_variable_v37` may be invalid.\n - Variable `value_component_v37_variable_v37` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v38_variable_v38` may be invalid.\n - Variable `value_component_v38_variable_v38` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v39_variable_v39` may be invalid.\n - Variable `value_component_v39_variable_v39` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v40_variable_v40` may be invalid.\n - Variable `value_component_v40_variable_v40` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v41_variable_v41` may be invalid.\n - Variable `value_component_v41_variable_v41` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v42_variable_v42` may be invalid.\n - Variable `value_component_v42_variable_v42` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v43_variable_v43` may be invalid.\n - Variable `value_component_v43_variable_v43` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v44_variable_v44` may be invalid.\n - Variable `value_component_v44_variable_v44` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v45_variable_v45` may be invalid.\n - Variable `value_component_v45_variable_v45` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v46_variable_v46` may be invalid.\n - Variable `value_component_v46_variable_v46` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v47_variable_v47` may be invalid.\n - Variable `value_component_v47_variable_v47` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v48_variable_v48` may be invalid.\n - Variable `value_component_v48_variable_v48` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v49_variable_v49` may be invalid.\n - Variable `value_component_v49_variable_v49` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v50_variable_v50` may be invalid.\n - Variable `value_component_v50_variable_v50` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v51_variable_v51` may be invalid.\n - Variable `value_component_v51_variable_v51` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v52_variable_v52` may be invalid.\n - Variable `value_component_v52_variable_v52` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v53_variable_v53` may be invalid.\n - Variable `value_component_v53_variable_v53` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v54_variable_v54` may be invalid.\n - Variable `value_component_v54_variable_v54` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v55_variable_v55` may be invalid.\n - Variable `value_component_v55_variable_v55` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v56_variable_v56` may be invalid.\n - Variable `value_component_v56_variable_v56` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v57_variable_v57` may be invalid.\n - Variable `value_component_v57_variable_v57` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v58_variable_v58` may be invalid.\n - Variable `value_component_v58_variable_v58` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v59_variable_v59` may be invalid.\n - Variable `value_component_v59_variable_v59` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v60_variable_v60` may be invalid.\n - Variable `value_component_v60_variable_v60` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v61_variable_v61` may be invalid.\n - Variable `value_component_v61_variable_v61` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v62_variable_v62` may be invalid.\n - Variable `value_component_v62_variable_v62` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v63_variable_v63` may be invalid.\n - Variable `value_component_v63_variable_v63` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v64_variable_v64` may be invalid.\n - Variable `value_component_v64_variable_v64` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v65_variable_v65` may be invalid.\n - Variable `value_component_v65_variable_v65` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v66_variable_v66` may be invalid.\n - Variable `value_component_v66_variable_v66` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v67_variable_v67` may be invalid.\n - Variable `value_component_v67_variable_v67` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v68_variable_v68` may be invalid.\n - Variable `value_component_v68_variable_v68` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v69_variable_v69` may be invalid.\n - Variable `value_component_v69_variable_v69` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v70_variable_v70` may be invalid.\n - Variable `value_component_v70_variable_v70` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v71_variable_v71` may be invalid.\n - Variable `value_component_v71_variable_v71` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v72_variable_v72` may be invalid.\n - Variable `value_component_v72_variable_v72` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v73_variable_v73` may be invalid.\n - Variable `value_component_v73_variable_v73` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v74_variable_v74` may be invalid.\n - Variable `value_component_v74_variable_v74` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v75_variable_v75` may be invalid.\n - Variable `value_component_v75_variable_v75` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v76_variable_v76` may be invalid.\n - Variable `value_component_v76_variable_v76` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v77_variable_v77` may be invalid.\n - Variable `value_component_v77_variable_v77` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v78_variable_v78` may be invalid.\n - Variable `value_component_v78_variable_v78` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v79_variable_v79` may be invalid.\n - Variable `value_component_v79_variable_v79` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v80_variable_v80` may be invalid.\n - Variable `value_component_v80_variable_v80` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v81_variable_v81` may be invalid.\n - Variable `value_component_v81_variable_v81` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v82_variable_v82` may be invalid.\n - Variable `value_component_v82_variable_v82` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v83_variable_v83` may be invalid.\n - Variable `value_component_v83_variable_v83` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v84_variable_v84` may be invalid.\n - Variable `value_component_v84_variable_v84` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v85_variable_v85` may be invalid.\n - Variable `value_component_v85_variable_v85` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v86_variable_v86` may be invalid.\n - Variable `value_component_v86_variable_v86` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v87_variable_v87` may be invalid.\n - Variable `value_component_v87_variable_v87` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v88_variable_v88` may be invalid.\n - Variable `value_component_v88_variable_v88` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v89_variable_v89` may be invalid.\n - Variable `value_component_v89_variable_v89` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v90_variable_v90` may be invalid.\n - Variable `value_component_v90_variable_v90` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v91_variable_v91` may be invalid.\n - Variable `value_component_v91_variable_v91` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v92_variable_v92` may be invalid.\n - Variable `value_component_v92_variable_v92` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v93_variable_v93` may be invalid.\n - Variable `value_component_v93_variable_v93` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v94_variable_v94` may be invalid.\n - Variable `value_component_v94_variable_v94` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k1` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k2` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k3` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k61` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k61` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k61r` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k61r` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k62` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k62` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k63` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k63` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k64` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k64` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k65` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k65` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k66` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k66` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k67` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k67` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k68` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k68` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k69` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k69` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k71` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k71` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k72` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k72` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k73` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k73` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k74` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k74` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\n - The SED-ML file at location `simulation_0.sedml` may be invalid.\n - Model `model` may be invalid.\n - The changes of the model may be invalid.\n - Change 1 may be invalid.\n - XPath could not be validated.\n - Change 2 may be invalid.\n - XPath could not be validated.\n - Change 3 may be invalid.\n - XPath could not be validated.\n - Change 4 may be invalid.\n - XPath could not be validated.\n - Change 5 may be invalid.\n - XPath could not be validated.\n - Change 6 may be invalid.\n - XPath could not be validated.\n - Change 7 may be invalid.\n - XPath could not be validated.\n - Change 8 may be invalid.\n - XPath could not be validated.\n - Change 9 may be invalid.\n - XPath could not be validated.\n - Change 10 may be invalid.\n - XPath could not be validated.\n - Change 11 may be invalid.\n - XPath could not be validated.\n - Change 12 may be invalid.\n - XPath could not be validated.\n - Change 13 may be invalid.\n - XPath could not be validated.\n - Change 14 may be invalid.\n - XPath could not be validated.\n - Change 15 may be invalid.\n - XPath could not be validated.\n - Change 16 may be invalid.\n - XPath could not be validated.\n - Change 17 may be invalid.\n - XPath could not be validated.\n - Change 18 may be invalid.\n - XPath could not be validated.\n - Change 19 may be invalid.\n - XPath could not be validated.\n - Change 20 may be invalid.\n - XPath could not be validated.\n - Change 21 may be invalid.\n - XPath could not be validated.\n - Change 22 may be invalid.\n - XPath could not be validated.\n - Change 23 may be invalid.\n - XPath could not be validated.\n - Change 24 may be invalid.\n - XPath could not be validated.\n - Change 25 may be invalid.\n - XPath could not be validated.\n - Change 26 may be invalid.\n - XPath could not be validated.\n - Change 27 may be invalid.\n - XPath could not be validated.\n - Change 28 may be invalid.\n - XPath could not be validated.\n - Change 29 may be invalid.\n - XPath could not be validated.\n - Change 30 may be invalid.\n - XPath could not be validated.\n - Change 31 may be invalid.\n - XPath could not be validated.\n - Change 32 may be invalid.\n - XPath could not be validated.\n - Change 33 may be invalid.\n - XPath could not be validated.\n - Change 34 may be invalid.\n - XPath could not be validated.\n - Change 35 may be invalid.\n - XPath could not be validated.\n - Change 36 may be invalid.\n - XPath could not be validated.\n - Change 37 may be invalid.\n - XPath could not be validated.\n - Change 38 may be invalid.\n - XPath could not be validated.\n - Change 39 may be invalid.\n - XPath could not be validated.\n - Change 40 may be invalid.\n - XPath could not be validated.\n - Change 41 may be invalid.\n - XPath could not be validated.\n - Change 42 may be invalid.\n - XPath could not be validated.\n - Change 43 may be invalid.\n - XPath could not be validated.\n - Change 44 may be invalid.\n - XPath could not be validated.\n - Change 45 may be invalid.\n - XPath could not be validated.\n - Change 46 may be invalid.\n - XPath could not be validated.\n - Change 47 may be invalid.\n - XPath could not be validated.\n - Change 48 may be invalid.\n - XPath could not be validated.\n - Change 49 may be invalid.\n - XPath could not be validated.\n - Change 50 may be invalid.\n - XPath could not be validated.\n - Change 51 may be invalid.\n - XPath could not be validated.\n - Change 52 may be invalid.\n - XPath could not be validated.\n - Change 53 may be invalid.\n - XPath could not be validated.\n - Change 54 may be invalid.\n - XPath could not be validated.\n - Change 55 may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n - Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_NatP_variable_NatP` may be invalid.\n - Variable `value_component_NatP_variable_NatP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_variable_MisP` may be invalid.\n - Variable `value_component_MisP_variable_MisP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_Ub_variable_Ub` may be invalid.\n - Variable `value_component_Ub_variable_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E1_variable_E1` may be invalid.\n - Variable `value_component_E1_variable_E1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E2_variable_E2` may be invalid.\n - Variable `value_component_E2_variable_E2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E3_variable_E3` may be invalid.\n - Variable `value_component_E3_variable_E3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_DUB_variable_DUB` may be invalid.\n - Variable `value_component_DUB_variable_DUB` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_Proteasome_variable_Proteasome` may be invalid.\n - Variable `value_component_Proteasome_variable_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_ROS_variable_ROS` may be invalid.\n - Variable `value_component_ROS_variable_ROS` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E1_Ub_variable_E1_Ub` may be invalid.\n - Variable `value_component_E1_Ub_variable_E1_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E2_Ub_variable_E2_Ub` may be invalid.\n - Variable `value_component_E2_Ub_variable_E2_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_E3_MisP_variable_E3_MisP` may be invalid.\n - Variable `value_component_E3_MisP_variable_E3_MisP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub_variable_MisP_Ub` may be invalid.\n - Variable `value_component_MisP_Ub_variable_MisP_Ub` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub2_variable_MisP_Ub2` may be invalid.\n - Variable `value_component_MisP_Ub2_variable_MisP_Ub2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub3_variable_MisP_Ub3` may be invalid.\n - Variable `value_component_MisP_Ub3_variable_MisP_Ub3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub4_variable_MisP_Ub4` may be invalid.\n - Variable `value_component_MisP_Ub4_variable_MisP_Ub4` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub5_variable_MisP_Ub5` may be invalid.\n - Variable `value_component_MisP_Ub5_variable_MisP_Ub5` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub6_variable_MisP_Ub6` may be invalid.\n - Variable `value_component_MisP_Ub6_variable_MisP_Ub6` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub7_variable_MisP_Ub7` may be invalid.\n - Variable `value_component_MisP_Ub7_variable_MisP_Ub7` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub8_variable_MisP_Ub8` may be invalid.\n - Variable `value_component_MisP_Ub8_variable_MisP_Ub8` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub4_Proteasome_variable_MisP_Ub4_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub4_Proteasome_variable_MisP_Ub4_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub5_Proteasome_variable_MisP_Ub5_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub5_Proteasome_variable_MisP_Ub5_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub6_Proteasome_variable_MisP_Ub6_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub6_Proteasome_variable_MisP_Ub6_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub7_Proteasome_variable_MisP_Ub7_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub7_Proteasome_variable_MisP_Ub7_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_Ub8_Proteasome_variable_MisP_Ub8_Proteasome` may be invalid.\n - Variable `value_component_MisP_Ub8_Proteasome_variable_MisP_Ub8_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_ATP_variable_ATP` may be invalid.\n - Variable `value_component_ATP_variable_ATP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_ADP_variable_ADP` may be invalid.\n - Variable `value_component_ADP_variable_ADP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_AMP_variable_AMP` may be invalid.\n - Variable `value_component_AMP_variable_AMP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb4_variable_degUb4` may be invalid.\n - Variable `value_component_degUb4_variable_degUb4` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb5_variable_degUb5` may be invalid.\n - Variable `value_component_degUb5_variable_degUb5` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb6_variable_degUb6` may be invalid.\n - Variable `value_component_degUb6_variable_degUb6` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb7_variable_degUb7` may be invalid.\n - Variable `value_component_degUb7_variable_degUb7` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_degUb8_variable_degUb8` may be invalid.\n - Variable `value_component_degUb8_variable_degUb8` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_MisP_total_variable_MisP_total` may be invalid.\n - Variable `value_component_MisP_total_variable_MisP_total` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_NatP_refolded_variable_NatP_refolded` may be invalid.\n - Variable `value_component_NatP_refolded_variable_NatP_refolded` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_AggP_variable_AggP` may be invalid.\n - Variable `value_component_AggP_variable_AggP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_SeqAggP_variable_SeqAggP` may be invalid.\n - Variable `value_component_SeqAggP_variable_SeqAggP` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_AggP_Proteasome_variable_AggP_Proteasome` may be invalid.\n - Variable `value_component_AggP_Proteasome_variable_AggP_Proteasome` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v1_variable_v1` may be invalid.\n - Variable `value_component_v1_variable_v1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v2_variable_v2` may be invalid.\n - Variable `value_component_v2_variable_v2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v3_variable_v3` may be invalid.\n - Variable `value_component_v3_variable_v3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v4_variable_v4` may be invalid.\n - Variable `value_component_v4_variable_v4` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v5_variable_v5` may be invalid.\n - Variable `value_component_v5_variable_v5` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v6_variable_v6` may be invalid.\n - Variable `value_component_v6_variable_v6` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v7_variable_v7` may be invalid.\n - Variable `value_component_v7_variable_v7` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v8_variable_v8` may be invalid.\n - Variable `value_component_v8_variable_v8` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v9_variable_v9` may be invalid.\n - Variable `value_component_v9_variable_v9` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v10_variable_v10` may be invalid.\n - Variable `value_component_v10_variable_v10` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v11_variable_v11` may be invalid.\n - Variable `value_component_v11_variable_v11` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v12_variable_v12` may be invalid.\n - Variable `value_component_v12_variable_v12` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v13_variable_v13` may be invalid.\n - Variable `value_component_v13_variable_v13` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v14_variable_v14` may be invalid.\n - Variable `value_component_v14_variable_v14` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v15_variable_v15` may be invalid.\n - Variable `value_component_v15_variable_v15` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v16_variable_v16` may be invalid.\n - Variable `value_component_v16_variable_v16` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v17_variable_v17` may be invalid.\n - Variable `value_component_v17_variable_v17` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v18_variable_v18` may be invalid.\n - Variable `value_component_v18_variable_v18` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v19_variable_v19` may be invalid.\n - Variable `value_component_v19_variable_v19` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v20_variable_v20` may be invalid.\n - Variable `value_component_v20_variable_v20` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v21_variable_v21` may be invalid.\n - Variable `value_component_v21_variable_v21` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v22_variable_v22` may be invalid.\n - Variable `value_component_v22_variable_v22` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v23_variable_v23` may be invalid.\n - Variable `value_component_v23_variable_v23` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v24_variable_v24` may be invalid.\n - Variable `value_component_v24_variable_v24` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v25_variable_v25` may be invalid.\n - Variable `value_component_v25_variable_v25` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v26_variable_v26` may be invalid.\n - Variable `value_component_v26_variable_v26` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v27_variable_v27` may be invalid.\n - Variable `value_component_v27_variable_v27` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v28_variable_v28` may be invalid.\n - Variable `value_component_v28_variable_v28` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v29_variable_v29` may be invalid.\n - Variable `value_component_v29_variable_v29` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v30_variable_v30` may be invalid.\n - Variable `value_component_v30_variable_v30` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v31_variable_v31` may be invalid.\n - Variable `value_component_v31_variable_v31` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v32_variable_v32` may be invalid.\n - Variable `value_component_v32_variable_v32` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v33_variable_v33` may be invalid.\n - Variable `value_component_v33_variable_v33` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v34_variable_v34` may be invalid.\n - Variable `value_component_v34_variable_v34` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v35_variable_v35` may be invalid.\n - Variable `value_component_v35_variable_v35` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v36_variable_v36` may be invalid.\n - Variable `value_component_v36_variable_v36` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v37_variable_v37` may be invalid.\n - Variable `value_component_v37_variable_v37` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v38_variable_v38` may be invalid.\n - Variable `value_component_v38_variable_v38` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v39_variable_v39` may be invalid.\n - Variable `value_component_v39_variable_v39` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v40_variable_v40` may be invalid.\n - Variable `value_component_v40_variable_v40` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v41_variable_v41` may be invalid.\n - Variable `value_component_v41_variable_v41` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v42_variable_v42` may be invalid.\n - Variable `value_component_v42_variable_v42` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v43_variable_v43` may be invalid.\n - Variable `value_component_v43_variable_v43` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v44_variable_v44` may be invalid.\n - Variable `value_component_v44_variable_v44` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v45_variable_v45` may be invalid.\n - Variable `value_component_v45_variable_v45` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v46_variable_v46` may be invalid.\n - Variable `value_component_v46_variable_v46` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v47_variable_v47` may be invalid.\n - Variable `value_component_v47_variable_v47` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v48_variable_v48` may be invalid.\n - Variable `value_component_v48_variable_v48` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v49_variable_v49` may be invalid.\n - Variable `value_component_v49_variable_v49` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v50_variable_v50` may be invalid.\n - Variable `value_component_v50_variable_v50` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v51_variable_v51` may be invalid.\n - Variable `value_component_v51_variable_v51` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v52_variable_v52` may be invalid.\n - Variable `value_component_v52_variable_v52` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v53_variable_v53` may be invalid.\n - Variable `value_component_v53_variable_v53` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v54_variable_v54` may be invalid.\n - Variable `value_component_v54_variable_v54` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v55_variable_v55` may be invalid.\n - Variable `value_component_v55_variable_v55` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v56_variable_v56` may be invalid.\n - Variable `value_component_v56_variable_v56` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v57_variable_v57` may be invalid.\n - Variable `value_component_v57_variable_v57` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v58_variable_v58` may be invalid.\n - Variable `value_component_v58_variable_v58` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v59_variable_v59` may be invalid.\n - Variable `value_component_v59_variable_v59` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v60_variable_v60` may be invalid.\n - Variable `value_component_v60_variable_v60` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v61_variable_v61` may be invalid.\n - Variable `value_component_v61_variable_v61` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v62_variable_v62` may be invalid.\n - Variable `value_component_v62_variable_v62` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v63_variable_v63` may be invalid.\n - Variable `value_component_v63_variable_v63` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v64_variable_v64` may be invalid.\n - Variable `value_component_v64_variable_v64` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v65_variable_v65` may be invalid.\n - Variable `value_component_v65_variable_v65` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v66_variable_v66` may be invalid.\n - Variable `value_component_v66_variable_v66` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v67_variable_v67` may be invalid.\n - Variable `value_component_v67_variable_v67` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v68_variable_v68` may be invalid.\n - Variable `value_component_v68_variable_v68` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v69_variable_v69` may be invalid.\n - Variable `value_component_v69_variable_v69` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v70_variable_v70` may be invalid.\n - Variable `value_component_v70_variable_v70` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v71_variable_v71` may be invalid.\n - Variable `value_component_v71_variable_v71` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v72_variable_v72` may be invalid.\n - Variable `value_component_v72_variable_v72` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v73_variable_v73` may be invalid.\n - Variable `value_component_v73_variable_v73` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v74_variable_v74` may be invalid.\n - Variable `value_component_v74_variable_v74` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v75_variable_v75` may be invalid.\n - Variable `value_component_v75_variable_v75` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v76_variable_v76` may be invalid.\n - Variable `value_component_v76_variable_v76` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v77_variable_v77` may be invalid.\n - Variable `value_component_v77_variable_v77` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v78_variable_v78` may be invalid.\n - Variable `value_component_v78_variable_v78` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v79_variable_v79` may be invalid.\n - Variable `value_component_v79_variable_v79` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v80_variable_v80` may be invalid.\n - Variable `value_component_v80_variable_v80` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v81_variable_v81` may be invalid.\n - Variable `value_component_v81_variable_v81` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v82_variable_v82` may be invalid.\n - Variable `value_component_v82_variable_v82` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v83_variable_v83` may be invalid.\n - Variable `value_component_v83_variable_v83` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v84_variable_v84` may be invalid.\n - Variable `value_component_v84_variable_v84` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v85_variable_v85` may be invalid.\n - Variable `value_component_v85_variable_v85` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v86_variable_v86` may be invalid.\n - Variable `value_component_v86_variable_v86` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v87_variable_v87` may be invalid.\n - Variable `value_component_v87_variable_v87` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v88_variable_v88` may be invalid.\n - Variable `value_component_v88_variable_v88` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v89_variable_v89` may be invalid.\n - Variable `value_component_v89_variable_v89` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v90_variable_v90` may be invalid.\n - Variable `value_component_v90_variable_v90` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v91_variable_v91` may be invalid.\n - Variable `value_component_v91_variable_v91` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v92_variable_v92` may be invalid.\n - Variable `value_component_v92_variable_v92` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v93_variable_v93` may be invalid.\n - Variable `value_component_v93_variable_v93` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_v94_variable_v94` may be invalid.\n - Variable `value_component_v94_variable_v94` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k1` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k1` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k2` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k2` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k3` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k3` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k61` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k61` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k61r` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k61r` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k62` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k62` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k63` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k63` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k64` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k64` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k65` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k65` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k66` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k66` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k67` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k67` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k68` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k68` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k69` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k69` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k71` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k71` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k72` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k72` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k73` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k73` may be invalid.\n - XPath could not be validated.\n - Data generator `data_generator_value_component_kinetic_parameters_variable_k74` may be invalid.\n - Variable `value_component_kinetic_parameters_variable_k74` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\nArchive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:\n simulation_0.sedml:\n Tasks (1):\n task\n Reports (1):\n report: 150 data sets\n\nExecuting SED-ML file 1: simulation_0.sedml ...\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n SED documents (1):\n Succeeded: 1\n Skipped: 0\n Failed: 0\n Tasks (1):\n Succeeded: 1\n Skipped: 0\n Failed: 0\n Outputs (1):\n Succeeded: 1\n Skipped: 0\n Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 70.2 KiB/70.2 KiB (526.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/rawLog.txt\nCompleted 102.8 KiB/102.8 KiB (1.1 MiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n adding: outputs/ (stored 0%)\n adding: outputs/log.yml (deflated 93%)\n adding: outputs/reports.h5 (deflated 74%)\n adding: rawLog.txt (deflated 93%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 64.5 KiB/64.5 KiB (460.7 KiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/outputs/reports.h5\nCompleted 28.8 KiB/99.9 KiB (319.4 KiB/s) with 2 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/output.zip\nCompleted 28.8 KiB/99.9 KiB (319.4 KiB/s) with 1 file(s) remaining\rCompleted 99.9 KiB/99.9 KiB (655.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive: archive.omex\n inflating: contents/proctor_2007a_remade.svg \n inflating: contents/proctor_2007e.ai \n inflating: contents/proctor_2007e.svg \n inflating: contents/proctor_tsirigotis_gray_2007.cellml \n inflating: contents/proctor_2007b.png \n inflating: contents/proctor_2007c.svg \n inflating: contents/proctor_2007a.xul \n inflating: contents/proctor_2007c.ai \n inflating: contents/proctor_2007a.ai \n inflating: contents/proctor_2007a.png \n inflating: contents/proctor_2007d.png \n inflating: contents/proctor_2007b.svg \n inflating: contents/proctor_2007e.png \n inflating: contents/proctor_2007a.svg \n inflating: contents/proctor_2007a_remade.ai \n inflating: contents/proctor_2007d.svg \n inflating: contents/proctor_2007a_remade.xul \n inflating: contents/proctor_tsirigotis_gray_2007.session.xml \n inflating: contents/proctor_2007d.ai \n inflating: contents/proctor_2007c.png \n inflating: contents/proctor_2007b.ai \n inflating: contents/simulation_0.sedml \n inflating: contents/metadata.rdf \n inflating: contents/manifest.xml \nCompleted 16.6 KiB/3.5 MiB (196.0 KiB/s) with 24 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/metadata.rdf\nCompleted 16.6 KiB/3.5 MiB (196.0 KiB/s) with 23 file(s) remaining\rCompleted 272.6 KiB/3.5 MiB (2.9 MiB/s) with 23 file(s) remaining \rCompleted 528.6 KiB/3.5 MiB (5.2 MiB/s) with 23 file(s) remaining \rCompleted 784.6 KiB/3.5 MiB (7.7 MiB/s) with 23 file(s) remaining \rCompleted 787.3 KiB/3.5 MiB (5.9 MiB/s) with 23 file(s) remaining \rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/manifest.xml\nCompleted 787.3 KiB/3.5 MiB (5.9 MiB/s) with 22 file(s) remaining\rCompleted 823.8 KiB/3.5 MiB (5.3 MiB/s) with 22 file(s) remaining\rupload: contents/proctor_2007a_remade.xul to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007a_remade.xul\nCompleted 823.8 KiB/3.5 MiB (5.3 MiB/s) with 21 file(s) remaining\rCompleted 875.2 KiB/3.5 MiB (5.4 MiB/s) with 21 file(s) remaining\rupload: contents/proctor_2007c.svg to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007c.svg\nCompleted 875.2 KiB/3.5 MiB (5.4 MiB/s) with 20 file(s) remaining\rCompleted 918.7 KiB/3.5 MiB (5.4 MiB/s) with 20 file(s) remaining\rupload: contents/proctor_2007a.png to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007a.png\nCompleted 918.7 KiB/3.5 MiB (5.4 MiB/s) with 19 file(s) remaining\rCompleted 973.4 KiB/3.5 MiB (5.0 MiB/s) with 19 file(s) remaining\rupload: contents/proctor_2007b.png to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007b.png\nCompleted 973.4 KiB/3.5 MiB (5.0 MiB/s) with 18 file(s) remaining\rCompleted 1.2 MiB/3.5 MiB (6.1 MiB/s) with 18 file(s) remaining \rupload: contents/proctor_2007b.ai to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007b.ai\nCompleted 1.2 MiB/3.5 MiB (6.1 MiB/s) with 17 file(s) remaining\rCompleted 1.2 MiB/3.5 MiB (5.5 MiB/s) with 17 file(s) remaining\rCompleted 1.4 MiB/3.5 MiB (6.4 MiB/s) with 17 file(s) remaining\rupload: contents/proctor_2007d.ai to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007d.ai\nCompleted 1.4 MiB/3.5 MiB (6.4 MiB/s) with 16 file(s) remaining\rCompleted 1.6 MiB/3.5 MiB (7.1 MiB/s) with 16 file(s) remaining\rupload: contents/proctor_2007d.svg to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007d.svg\nCompleted 1.6 MiB/3.5 MiB (7.1 MiB/s) with 15 file(s) remaining\rupload: contents/proctor_2007c.ai to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007c.ai\nCompleted 1.6 MiB/3.5 MiB (7.1 MiB/s) with 14 file(s) remaining\rCompleted 1.6 MiB/3.5 MiB (6.9 MiB/s) with 14 file(s) remaining\rupload: contents/proctor_2007a.ai to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007a.ai\nCompleted 1.6 MiB/3.5 MiB (6.9 MiB/s) with 13 file(s) remaining\rCompleted 1.8 MiB/3.5 MiB (7.5 MiB/s) with 13 file(s) remaining\rupload: contents/proctor_2007e.ai to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007e.ai\nCompleted 1.8 MiB/3.5 MiB (7.5 MiB/s) with 12 file(s) remaining\rCompleted 1.9 MiB/3.5 MiB (7.5 MiB/s) with 12 file(s) remaining\rCompleted 2.0 MiB/3.5 MiB (7.8 MiB/s) with 12 file(s) remaining\rupload: contents/proctor_2007b.svg to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007b.svg\nCompleted 2.0 MiB/3.5 MiB (7.8 MiB/s) with 11 file(s) remaining\rCompleted 2.2 MiB/3.5 MiB (8.7 MiB/s) with 11 file(s) remaining\rCompleted 2.5 MiB/3.5 MiB (9.7 MiB/s) with 11 file(s) remaining\rupload: contents/proctor_2007c.png to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007c.png\nCompleted 2.5 MiB/3.5 MiB (9.7 MiB/s) with 10 file(s) remaining\rCompleted 2.5 MiB/3.5 MiB (9.6 MiB/s) with 10 file(s) remaining\rupload: contents/proctor_2007d.png to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007d.png\nCompleted 2.5 MiB/3.5 MiB (9.6 MiB/s) with 9 file(s) remaining\rCompleted 2.7 MiB/3.5 MiB (10.5 MiB/s) with 9 file(s) remaining\rCompleted 3.0 MiB/3.5 MiB (11.5 MiB/s) with 9 file(s) remaining\rCompleted 3.0 MiB/3.5 MiB (11.4 MiB/s) with 9 file(s) remaining\rupload: contents/proctor_2007e.png to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007e.png\nCompleted 3.0 MiB/3.5 MiB (11.4 MiB/s) with 8 file(s) remaining\rCompleted 3.0 MiB/3.5 MiB (10.0 MiB/s) with 8 file(s) remaining\rupload: contents/proctor_tsirigotis_gray_2007.session.xml to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_tsirigotis_gray_2007.session.xml\nCompleted 3.0 MiB/3.5 MiB (10.0 MiB/s) with 7 file(s) remaining\rCompleted 3.0 MiB/3.5 MiB (9.7 MiB/s) with 7 file(s) remaining \rupload: contents/proctor_2007e.svg to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007e.svg\nCompleted 3.0 MiB/3.5 MiB (9.7 MiB/s) with 6 file(s) remaining\rCompleted 3.2 MiB/3.5 MiB (10.0 MiB/s) with 6 file(s) remaining\rupload: contents/simulation_0.sedml to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/simulation_0.sedml\nCompleted 3.2 MiB/3.5 MiB (10.0 MiB/s) with 5 file(s) remaining\rCompleted 3.4 MiB/3.5 MiB (10.3 MiB/s) with 5 file(s) remaining\rupload: contents/proctor_tsirigotis_gray_2007.cellml to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_tsirigotis_gray_2007.cellml\nCompleted 3.4 MiB/3.5 MiB (10.3 MiB/s) with 4 file(s) remaining\rCompleted 3.4 MiB/3.5 MiB (9.9 MiB/s) with 4 file(s) remaining \rupload: contents/proctor_2007a_remade.svg to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007a_remade.svg\nCompleted 3.4 MiB/3.5 MiB (9.9 MiB/s) with 3 file(s) remaining\rCompleted 3.5 MiB/3.5 MiB (10.0 MiB/s) with 3 file(s) remaining\rupload: contents/proctor_2007a.svg to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007a.svg\nCompleted 3.5 MiB/3.5 MiB (10.0 MiB/s) with 2 file(s) remaining\rCompleted 3.5 MiB/3.5 MiB (9.6 MiB/s) with 2 file(s) remaining \rupload: contents/proctor_2007a_remade.ai to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007a_remade.ai\nCompleted 3.5 MiB/3.5 MiB (9.6 MiB/s) with 1 file(s) remaining\rCompleted 3.5 MiB/3.5 MiB (9.2 MiB/s) with 1 file(s) remaining\rupload: contents/proctor_2007a.xul to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/contents/proctor_2007a.xul\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 79.4 KiB/79.4 KiB (815.9 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261774c4679625b3246f72e/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /simulation_0.sedml\ncreating dataset /simulation_0.sedml/report, shape: (150, 11), type: float64\ndataset created, uuid: d-2f54da16-94e8ffdd-b126-1fc4d1-ec35f7, chunk_size: (150, 11)\ncreating attribute combineArchiveLocation in /simulation_0.sedml\ncreating attribute uri in /simulation_0.sedml\ncreating attribute _type in /simulation_0.sedml/report\ncreating attribute sedmlDataSetDataTypes in /simulation_0.sedml/report\ncreating attribute sedmlDataSetIds in /simulation_0.sedml/report\ncreating attribute sedmlDataSetLabels in /simulation_0.sedml/report\ncreating attribute sedmlDataSetNames in /simulation_0.sedml/report\ncreating attribute sedmlDataSetShapes in /simulation_0.sedml/report\ncreating attribute sedmlId in /simulation_0.sedml/report\ncreating attribute uri in /simulation_0.sedml/report\ncreate_links: /\ngot link: simulation_0.sedml\ncreate_links: /simulation_0.sedml\ngot link: report\nwrite_dataset src: /simulation_0.sedml/report to tgt: /simulation_0.sedml/report, shape: (150, 11), type: float64\niterating over chunks for /simulation_0.sedml/report\nwriting dataset data for slice: (slice(0, 150, 1), slice(0, 11, 1))\ndone with dataload for /simulation_0.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6261774c4679625b3246f72e\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.112169,"sedDocuments":[{"location":"simulation_0.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" Found 1 tasks and 1 outputs:\n Tasks:\n `task`\n Outputs:\n `report`\n Executing task 1: `task`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\n\n Executed 1 tasks and 1 outputs:\n Tasks:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.262471,"tasks":[{"id":"task","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `value_component_kinetic_parameters_variable_k67` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v70_variable_v70` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_ROS_variable_ROS` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v50_variable_v50` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v92_variable_v92` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v22_variable_v22` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v26_variable_v26` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_AggP_Proteasome_variable_AggP_Proteasome` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_degUb5_variable_degUb5` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v80_variable_v80` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_DUB_variable_DUB` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_E3_variable_E3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v6_variable_v6` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v24_variable_v24` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v89_variable_v89` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_E2_variable_E2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v53_variable_v53` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v3_variable_v3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v83_variable_v83` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_degUb7_variable_degUb7` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v23_variable_v23` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v73_variable_v73` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_degUb4_variable_degUb4` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v82_variable_v82` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v4_variable_v4` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub3_variable_MisP_Ub3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v90_variable_v90` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v71_variable_v71` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v43_variable_v43` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v28_variable_v28` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_ADP_variable_ADP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v25_variable_v25` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v52_variable_v52` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v72_variable_v72` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v8_variable_v8` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v29_variable_v29` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_degUb6_variable_degUb6` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v5_variable_v5` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v54_variable_v54` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v27_variable_v27` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_degUb8_variable_degUb8` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v79_variable_v79` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v30_variable_v30` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v48_variable_v48` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v49_variable_v49` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v46_variable_v46` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k71` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v7_variable_v7` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v56_variable_v56` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v84_variable_v84` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v91_variable_v91` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_SeqAggP_variable_SeqAggP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub4_variable_MisP_Ub4` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v2_variable_v2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v1_variable_v1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_total_variable_MisP_total` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v55_variable_v55` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v32_variable_v32` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v12_variable_v12` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k68` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_NatP_refolded_variable_NatP_refolded` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v9_variable_v9` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v58_variable_v58` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v10_variable_v10` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k61r` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v75_variable_v75` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub8_Proteasome_variable_MisP_Ub8_Proteasome` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_E1_Ub_variable_E1_Ub` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_ATP_variable_ATP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v74_variable_v74` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k73` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k65` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v93_variable_v93` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v62_variable_v62` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_Proteasome_variable_Proteasome` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v85_variable_v85` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v31_variable_v31` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_AggP_variable_AggP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k69` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v11_variable_v11` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v60_variable_v60` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v86_variable_v86` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v57_variable_v57` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v36_variable_v36` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_AMP_variable_AMP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v76_variable_v76` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k64` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v45_variable_v45` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub6_variable_MisP_Ub6` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub5_variable_MisP_Ub5` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v59_variable_v59` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v15_variable_v15` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v17_variable_v17` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k3` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k63` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v33_variable_v33` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_environment_variable_time` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v14_variable_v14` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v34_variable_v34` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v61_variable_v61` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v13_variable_v13` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v18_variable_v18` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v38_variable_v38` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v94_variable_v94` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_E2_Ub_variable_E2_Ub` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub8_variable_MisP_Ub8` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v35_variable_v35` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k72` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v64_variable_v64` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_NatP_variable_NatP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v20_variable_v20` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_E3_MisP_variable_E3_MisP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v77_variable_v77` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v39_variable_v39` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_Ub_variable_Ub` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v63_variable_v63` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v87_variable_v87` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub7_variable_MisP_Ub7` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v37_variable_v37` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v19_variable_v19` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v40_variable_v40` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v66_variable_v66` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub6_Proteasome_variable_MisP_Ub6_Proteasome` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v81_variable_v81` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub4_Proteasome_variable_MisP_Ub4_Proteasome` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub5_Proteasome_variable_MisP_Ub5_Proteasome` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v16_variable_v16` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v78_variable_v78` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v65_variable_v65` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_variable_MisP` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v44_variable_v44` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k66` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k61` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub_variable_MisP_Ub` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v51_variable_v51` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k62` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v88_variable_v88` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_E1_variable_E1` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v41_variable_v41` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_kinetic_parameters_variable_k74` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v68_variable_v68` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub2_variable_MisP_Ub2` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v67_variable_v67` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_MisP_Ub7_Proteasome_variable_MisP_Ub7_Proteasome` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v42_variable_v42` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v47_variable_v47` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v69_variable_v69` may be invalid.\n - XPath could not be validated.\n- Variable `value_component_v21_variable_v21` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), 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