{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    444      0 --:--:-- --:--:-- --:--:--   445\n\r100 16774  100 16774    0     0  39799      0 --:--:-- --:--:-- --:--:-- 39799\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\nTraceback (most recent call last):\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 247, in <module>\n    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 213, in update_paths\n    update_scripts(scripts_dir, new_path, clear_args, extra_args)\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 125, in update_scripts\n    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 118, in update_script\n    with open(script_filename, 'w') as f:\nOSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive may be invalid.\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Model `model` may be invalid.\n    - The model file `cell-model.xml` may be invalid.\n      - Validation is not available for CellML 1.1 files.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - Output `plot2` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - Output `plot3` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\n  - The SED-ML file at location `experiments/cell-model.sedml` may be invalid.\n    - Model `model` may be invalid.\n      - The model file `cell-model.xml` may be invalid.\n        - Validation is not available for CellML 1.1 files.\n    - Output `plot1` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n    - Output `plot2` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n    - Output `plot3` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - Output `plot2` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - Output `plot3` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\nArchive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 0 reports, and 3 plots:\n  experiments/cell-model.sedml:\n    Tasks (2):\n      repeatedTask\n      task1\n    Plots (3):\n      plot1: 1 curves\n      plot2: 3 curves\n      plot3: 3 curves\n\nExecuting SED-ML file 1: experiments/cell-model.sedml ...\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Outputs (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 6.1 KiB/6.1 KiB (53.5 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/rawLog.txt\nCompleted 11.0 KiB/11.0 KiB (88.4 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 84%)\n  adding: outputs/reports.h5 (deflated 18%)\n  adding: outputs/experiments/ (stored 0%)\n  adding: outputs/experiments/cell-model.sedml/ (stored 0%)\n  adding: outputs/experiments/cell-model.sedml/plot3.pdf (deflated 18%)\n  adding: outputs/experiments/cell-model.sedml/plot2.pdf (deflated 13%)\n  adding: outputs/experiments/cell-model.sedml/plot1.pdf (deflated 23%)\n  adding: rawLog.txt (deflated 79%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/576.4 KiB (5.9 MiB/s) with 1 file(s) remaining\rCompleted 512.0 KiB/576.4 KiB (10.3 MiB/s) with 1 file(s) remaining\rCompleted 576.4 KiB/576.4 KiB (4.6 MiB/s) with 1 file(s) remaining \rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/outputs/reports.h5\nCompleted 256.0 KiB/618.2 KiB (4.8 MiB/s) with 6 file(s) remaining\rCompleted 512.0 KiB/618.2 KiB (8.5 MiB/s) with 6 file(s) remaining\rCompleted 528.0 KiB/618.2 KiB (4.3 MiB/s) with 6 file(s) remaining\rupload: outputs/experiments/cell-model.sedml/plot3.pdf to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/outputs/experiments/cell-model.sedml/plot3.pdf\nCompleted 528.0 KiB/618.2 KiB (4.3 MiB/s) with 5 file(s) remaining\rCompleted 568.5 KiB/618.2 KiB (4.1 MiB/s) with 5 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/outputs/plots.zip\nCompleted 568.5 KiB/618.2 KiB (4.1 MiB/s) with 4 file(s) remaining\rCompleted 581.4 KiB/618.2 KiB (3.9 MiB/s) with 4 file(s) remaining\rupload: outputs/experiments/cell-model.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/outputs/experiments/cell-model.sedml/plot1.pdf\nCompleted 581.4 KiB/618.2 KiB (3.9 MiB/s) with 3 file(s) remaining\rCompleted 590.3 KiB/618.2 KiB (3.7 MiB/s) with 3 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/output.zip\nCompleted 590.3 KiB/618.2 KiB (3.7 MiB/s) with 2 file(s) remaining\rCompleted 610.8 KiB/618.2 KiB (3.5 MiB/s) with 2 file(s) remaining\rupload: outputs/experiments/cell-model.sedml/plot2.pdf to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/outputs/experiments/cell-model.sedml/plot2.pdf\nCompleted 610.8 KiB/618.2 KiB (3.5 MiB/s) with 1 file(s) remaining\rCompleted 618.2 KiB/618.2 KiB (3.2 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/potassium_channel_n_gate_model.xml  \n  inflating: contents/parameters_model.xml  \n  inflating: contents/interface_model.xml  \n  inflating: contents/leakage_current_model.xml  \n  inflating: contents/sodium_channel_model.xml  \n  inflating: contents/units_model.xml  \n  inflating: contents/potassium_channel_model.xml  \n  inflating: contents/sodium_channel_h_gate_model.xml  \n  inflating: contents/default_variable_values.xml  \n  inflating: contents/time_model.xml  \n  inflating: contents/stimulus_protocol_model.xml  \n  inflating: contents/membrane_model.xml  \n  inflating: contents/sodium_channel_m_gate_model.xml  \n  inflating: contents/cell_model_interface.xml  \n  inflating: contents/experiments/cell-model.xml  \n  inflating: contents/experiments/cell-model.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 13.3 KiB/96.3 KiB (189.2 KiB/s) with 18 file(s) remaining\rupload: contents/cell_model_interface.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/cell_model_interface.xml\nCompleted 13.3 KiB/96.3 KiB (189.2 KiB/s) with 17 file(s) remaining\rCompleted 22.5 KiB/96.3 KiB (196.9 KiB/s) with 17 file(s) remaining\rupload: contents/experiments/cell-model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/experiments/cell-model.xml\nCompleted 22.5 KiB/96.3 KiB (196.9 KiB/s) with 16 file(s) remaining\rCompleted 26.6 KiB/96.3 KiB (219.3 KiB/s) with 16 file(s) remaining\rupload: contents/membrane_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/membrane_model.xml\nCompleted 26.6 KiB/96.3 KiB (219.3 KiB/s) with 15 file(s) remaining\rCompleted 32.5 KiB/96.3 KiB (246.7 KiB/s) with 15 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/metadata.rdf\nCompleted 32.5 KiB/96.3 KiB (246.7 KiB/s) with 14 file(s) remaining\rCompleted 38.6 KiB/96.3 KiB (248.8 KiB/s) with 14 file(s) remaining\rupload: contents/sodium_channel_m_gate_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/sodium_channel_m_gate_model.xml\nCompleted 38.6 KiB/96.3 KiB (248.8 KiB/s) with 13 file(s) remaining\rCompleted 41.1 KiB/96.3 KiB (250.8 KiB/s) with 13 file(s) remaining\rupload: contents/parameters_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/parameters_model.xml\nCompleted 41.1 KiB/96.3 KiB (250.8 KiB/s) with 12 file(s) remaining\rCompleted 46.8 KiB/96.3 KiB (265.3 KiB/s) with 12 file(s) remaining\rupload: contents/potassium_channel_n_gate_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/potassium_channel_n_gate_model.xml\nCompleted 46.8 KiB/96.3 KiB (265.3 KiB/s) with 11 file(s) remaining\rCompleted 49.4 KiB/96.3 KiB (268.9 KiB/s) with 11 file(s) remaining\rupload: contents/stimulus_protocol_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/stimulus_protocol_model.xml\nCompleted 49.4 KiB/96.3 KiB (268.9 KiB/s) with 10 file(s) remaining\rCompleted 58.6 KiB/96.3 KiB (298.1 KiB/s) with 10 file(s) remaining\rupload: contents/experiments/cell-model.sedml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/experiments/cell-model.sedml\nCompleted 58.6 KiB/96.3 KiB (298.1 KiB/s) with 9 file(s) remaining\rCompleted 64.0 KiB/96.3 KiB (322.9 KiB/s) with 9 file(s) remaining\rupload: contents/sodium_channel_h_gate_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/sodium_channel_h_gate_model.xml\nCompleted 64.0 KiB/96.3 KiB (322.9 KiB/s) with 8 file(s) remaining\rCompleted 66.6 KiB/96.3 KiB (323.6 KiB/s) with 8 file(s) remaining\rupload: contents/time_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/time_model.xml\nCompleted 66.6 KiB/96.3 KiB (323.6 KiB/s) with 7 file(s) remaining\rCompleted 73.0 KiB/96.3 KiB (326.9 KiB/s) with 7 file(s) remaining\rupload: contents/units_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/units_model.xml\nCompleted 73.0 KiB/96.3 KiB (326.9 KiB/s) with 6 file(s) remaining\rCompleted 79.2 KiB/96.3 KiB (321.4 KiB/s) with 6 file(s) remaining\rupload: contents/potassium_channel_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/potassium_channel_model.xml\nCompleted 79.2 KiB/96.3 KiB (321.4 KiB/s) with 5 file(s) remaining\rCompleted 84.1 KiB/96.3 KiB (337.4 KiB/s) with 5 file(s) remaining\rupload: contents/sodium_channel_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/sodium_channel_model.xml\nCompleted 84.1 KiB/96.3 KiB (337.4 KiB/s) with 4 file(s) remaining\rCompleted 88.2 KiB/96.3 KiB (349.5 KiB/s) with 4 file(s) remaining\rupload: contents/default_variable_values.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/default_variable_values.xml\nCompleted 88.2 KiB/96.3 KiB (349.5 KiB/s) with 3 file(s) remaining\rCompleted 91.4 KiB/96.3 KiB (342.6 KiB/s) with 3 file(s) remaining\rupload: contents/leakage_current_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/leakage_current_model.xml\nCompleted 91.4 KiB/96.3 KiB (342.6 KiB/s) with 2 file(s) remaining\rCompleted 93.6 KiB/96.3 KiB (330.0 KiB/s) with 2 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/manifest.xml\nCompleted 93.6 KiB/96.3 KiB (330.0 KiB/s) with 1 file(s) remaining\rCompleted 96.3 KiB/96.3 KiB (299.6 KiB/s) with 1 file(s) remaining\rupload: contents/interface_model.xml to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/contents/interface_model.xml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 15.1 KiB/15.1 KiB (145.2 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626176f64679625b3246f5a2/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /experiments\ncreating group /experiments/cell-model.sedml\ncreating dataset /experiments/cell-model.sedml/plot1, shape: (2, 1, 1, 10001), type: float64\ndataset created, uuid: d-9fe15115-03a14d73-6ab4-eee991-748d2b, chunk_size: (2, 1, 1, 10001)\ncreating dataset /experiments/cell-model.sedml/plot2, shape: (6, 1, 1, 10001), type: float64\ndataset created, uuid: d-9fe15115-03a14d73-59f2-448be5-cf6b57, chunk_size: (6, 1, 1, 10001)\ncreating dataset /experiments/cell-model.sedml/plot3, shape: (6, 1, 1, 10001), type: float64\ndataset created, uuid: d-9fe15115-03a14d73-9bd6-e857a0-94775f, chunk_size: (6, 1, 1, 10001)\ncreating attribute combineArchiveLocation in /experiments\ncreating attribute uri in /experiments\ncreating attribute combineArchiveLocation in /experiments/cell-model.sedml\ncreating attribute uri in /experiments/cell-model.sedml\ncreating attribute _type in /experiments/cell-model.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /experiments/cell-model.sedml/plot1\ncreating attribute sedmlDataSetIds in /experiments/cell-model.sedml/plot1\ncreating attribute sedmlDataSetLabels in /experiments/cell-model.sedml/plot1\ncreating attribute sedmlDataSetNames in /experiments/cell-model.sedml/plot1\ncreating attribute sedmlDataSetShapes in /experiments/cell-model.sedml/plot1\ncreating attribute sedmlId in /experiments/cell-model.sedml/plot1\ncreating attribute uri in /experiments/cell-model.sedml/plot1\ncreating attribute _type in /experiments/cell-model.sedml/plot2\ncreating attribute sedmlDataSetDataTypes in /experiments/cell-model.sedml/plot2\ncreating attribute sedmlDataSetIds in /experiments/cell-model.sedml/plot2\ncreating attribute sedmlDataSetLabels in /experiments/cell-model.sedml/plot2\ncreating attribute sedmlDataSetNames in /experiments/cell-model.sedml/plot2\ncreating attribute sedmlDataSetShapes in /experiments/cell-model.sedml/plot2\ncreating attribute sedmlId in /experiments/cell-model.sedml/plot2\ncreating attribute uri in /experiments/cell-model.sedml/plot2\ncreating attribute _type in /experiments/cell-model.sedml/plot3\ncreating attribute sedmlDataSetDataTypes in /experiments/cell-model.sedml/plot3\ncreating attribute sedmlDataSetIds in /experiments/cell-model.sedml/plot3\ncreating attribute sedmlDataSetLabels in /experiments/cell-model.sedml/plot3\ncreating attribute sedmlDataSetNames in /experiments/cell-model.sedml/plot3\ncreating attribute sedmlDataSetShapes in /experiments/cell-model.sedml/plot3\ncreating attribute sedmlId in /experiments/cell-model.sedml/plot3\ncreating attribute uri in /experiments/cell-model.sedml/plot3\ncreate_links: /\ngot link: experiments\ncreate_links: /experiments\ngot link: cell-model.sedml\ncreate_links: /experiments/cell-model.sedml\ngot link: plot1\ngot link: plot2\ngot link: plot3\nwrite_dataset src: /experiments/cell-model.sedml/plot1 to tgt: /experiments/cell-model.sedml/plot1, shape: (2, 1, 1, 10001), type: float64\niterating over chunks for /experiments/cell-model.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 10001, 1))\ndone with dataload for /experiments/cell-model.sedml/plot1\nwrite_dataset src: /experiments/cell-model.sedml/plot2 to tgt: /experiments/cell-model.sedml/plot2, shape: (6, 1, 1, 10001), type: float64\niterating over chunks for /experiments/cell-model.sedml/plot2\nwriting dataset data for slice: (slice(0, 6, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 10001, 1))\ndone with dataload for /experiments/cell-model.sedml/plot2\nwrite_dataset src: /experiments/cell-model.sedml/plot3 to tgt: /experiments/cell-model.sedml/plot3, shape: (6, 1, 1, 10001), type: float64\niterating over chunks for /experiments/cell-model.sedml/plot3\nwriting dataset data for slice: (slice(0, 6, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 10001, 1))\ndone with dataload for /experiments/cell-model.sedml/plot3\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/626176f64679625b3246f5a2\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":5.198945,"sedDocuments":[{"location":"experiments/cell-model.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"  Found 2 tasks and 3 outputs:\n    Tasks:\n      `repeatedTask`\n      `task1`\n    Outputs:\n      `plot1`\n      `plot2`\n      `plot3`\n  Executing task 1: `repeatedTask`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 3 outputs ...\n      Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n      Generating output 2: `plot2` ... \u001b[34msucceeded\u001b[0m\n      Generating output 3: `plot3` ... \u001b[34msucceeded\u001b[0m\n  Executing task 2: `task1`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 3 outputs ...\n      Generating output 1: `plot1` ...      Generating output 2: `plot2` ...      Generating output 3: `plot3` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n  Executed 2 tasks and 3 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 3\n      Skipped: 0\n      Failed: 0\n","duration":4.663495,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable2_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable2_3` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `xVariable3_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable3_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable3_2` may be invalid.\n  - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable3_3` may be invalid.\n  - XPath could not be validated.\n- Variable `xVariable3_3` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable2_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable2_2` may be invalid.\n  - XPath could not be validated.\n- Variable `xVariable3_2` may be invalid.\n  - XPath could not be validated.\n- Variable `xVariable2_3` may be invalid.\n  - XPath could not be validated.\n- Variable `xVariable2_2` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.865107,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.594955,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.488962,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]},{"id":"plot2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the X axis because the X data generators have inconsistent names.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":1.29939,"curves":[{"id":"curve2_1","status":"SUCCEEDED"},{"id":"curve2_2","status":"SUCCEEDED"},{"id":"curve2_3","status":"SUCCEEDED"}]},{"id":"plot3","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the X axis because the X data generators have inconsistent names.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":1.272829,"curves":[{"id":"curve3_1","status":"SUCCEEDED"},{"id":"curve3_2","status":"SUCCEEDED"},{"id":"curve3_3","status":"SUCCEEDED"}]}]}]}