{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    484      0 --:--:-- --:--:-- --:--:--   486\n\r100  217k  100  217k    0     0   522k      0 --:--:-- --:--:-- --:--:--  522k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\nTraceback (most recent call last):\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 247, in <module>\n    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 213, in update_paths\n    update_scripts(scripts_dir, new_path, clear_args, extra_args)\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 125, in update_scripts\n    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 118, in update_script\n    with open(script_filename, 'w') as f:\nOSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive may be invalid.\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Model `model` may be invalid.\n    - The changes of the model may be invalid.\n      - Change 1 may be invalid.\n        - XPath could not be validated.\n      - Change 2 may be invalid.\n        - XPath could not be validated.\n      - Change 3 may be invalid.\n        - XPath could not be validated.\n      - Change 4 may be invalid.\n        - XPath could not be validated.\n      - Change 5 may be invalid.\n        - XPath could not be validated.\n      - Change 6 may be invalid.\n        - XPath could not be validated.\n      - Change 7 may be invalid.\n        - XPath could not be validated.\n      - Change 8 may be invalid.\n        - XPath could not be validated.\n      - Change 9 may be invalid.\n        - XPath could not be validated.\n      - Change 10 may be invalid.\n        - XPath could not be validated.\n      - Change 11 may be invalid.\n        - XPath could not be validated.\n      - Change 12 may be invalid.\n        - XPath could not be validated.\n      - Change 13 may be invalid.\n        - XPath could not be validated.\n      - Change 14 may be invalid.\n        - XPath could not be validated.\n      - Change 15 may be invalid.\n        - XPath could not be validated.\n      - Change 16 may be invalid.\n        - XPath could not be validated.\n      - Change 17 may be invalid.\n        - XPath could not be validated.\n      - Change 18 may be invalid.\n        - XPath could not be validated.\n      - Change 19 may be invalid.\n        - XPath could not be validated.\n      - Change 20 may be invalid.\n        - XPath could not be validated.\n      - Change 21 may be invalid.\n        - XPath could not be validated.\n      - Change 22 may be invalid.\n        - XPath could not be validated.\n      - Change 23 may be invalid.\n        - XPath could not be validated.\n      - Change 24 may be invalid.\n        - XPath could not be validated.\n      - Change 25 may be invalid.\n        - XPath could not be validated.\n      - Change 26 may be invalid.\n        - XPath could not be validated.\n      - Change 27 may be invalid.\n        - XPath could not be validated.\n      - Change 28 may be invalid.\n        - XPath could not be validated.\n      - Change 29 may be invalid.\n        - XPath could not be validated.\n      - Change 30 may be invalid.\n        - XPath could not be validated.\n      - Change 31 may be invalid.\n        - XPath could not be validated.\n      - Change 32 may be invalid.\n        - XPath could not be validated.\n      - Change 33 may be invalid.\n        - XPath could not be validated.\n      - Change 34 may be invalid.\n        - XPath could not be validated.\n      - Change 35 may be invalid.\n        - XPath could not be validated.\n      - Change 36 may be invalid.\n        - XPath could not be validated.\n      - Change 37 may be invalid.\n        - XPath could not be validated.\n      - Change 38 may be invalid.\n        - XPath could not be validated.\n      - Change 39 may be invalid.\n        - XPath could not be validated.\n      - Change 40 may be invalid.\n        - XPath could not be validated.\n      - Change 41 may be invalid.\n        - XPath could not be validated.\n      - Change 42 may be invalid.\n        - XPath could not be validated.\n      - Change 43 may be invalid.\n        - XPath could not be validated.\n      - Change 44 may be invalid.\n        - XPath could not be validated.\n      - Change 45 may be invalid.\n        - XPath could not be validated.\n      - Change 46 may be invalid.\n        - XPath could not be validated.\n      - Change 47 may be invalid.\n        - XPath could not be validated.\n      - Change 48 may be invalid.\n        - XPath could not be validated.\n  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n    - Variable `value_component_environment_variable_time` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MP_variable_MP` may be invalid.\n    - Variable `value_component_MP_variable_MP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MP_variable_vsP` may be invalid.\n    - Variable `value_component_MP_variable_vsP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MP_variable_vmP` may be invalid.\n    - Variable `value_component_MP_variable_vmP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MP_variable_KmP` may be invalid.\n    - Variable `value_component_MP_variable_KmP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MP_variable_KIP` may be invalid.\n    - Variable `value_component_MP_variable_KIP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_P0_variable_P0` may be invalid.\n    - Variable `value_component_P0_variable_P0` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_P0_variable_ksP` may be invalid.\n    - Variable `value_component_P0_variable_ksP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_P1_variable_P1` may be invalid.\n    - Variable `value_component_P1_variable_P1` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_P2_variable_P2` may be invalid.\n    - Variable `value_component_P2_variable_P2` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_P2_variable_vdP` may be invalid.\n    - Variable `value_component_P2_variable_vdP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_P2_variable_KdP` may be invalid.\n    - Variable `value_component_P2_variable_KdP` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_P2_variable_Pt` may be invalid.\n    - Variable `value_component_P2_variable_Pt` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MT_variable_MT` may be invalid.\n    - Variable `value_component_MT_variable_MT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MT_variable_vsT` may be invalid.\n    - Variable `value_component_MT_variable_vsT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MT_variable_vmT` may be invalid.\n    - Variable `value_component_MT_variable_vmT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MT_variable_KmT` may be invalid.\n    - Variable `value_component_MT_variable_KmT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_MT_variable_KIT` may be invalid.\n    - Variable `value_component_MT_variable_KIT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_T0_variable_T0` may be invalid.\n    - Variable `value_component_T0_variable_T0` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_T0_variable_ksT` may be invalid.\n    - Variable `value_component_T0_variable_ksT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_T1_variable_T1` may be invalid.\n    - Variable `value_component_T1_variable_T1` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_T2_variable_T2` may be invalid.\n    - Variable `value_component_T2_variable_T2` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_T2_variable_vdT` may be invalid.\n    - Variable `value_component_T2_variable_vdT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_T2_variable_KdT` may be invalid.\n    - Variable `value_component_T2_variable_KdT` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_C_variable_C` may be invalid.\n    - Variable `value_component_C_variable_C` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_C_variable_kdC` may be invalid.\n    - Variable `value_component_C_variable_kdC` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_CN_variable_CN` may be invalid.\n    - Variable `value_component_CN_variable_CN` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_CN_variable_kdN` may be invalid.\n    - Variable `value_component_CN_variable_kdN` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_k1` may be invalid.\n    - Variable `value_component_parameters_variable_k1` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_k2` may be invalid.\n    - Variable `value_component_parameters_variable_k2` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_k3` may be invalid.\n    - Variable `value_component_parameters_variable_k3` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_k4` may be invalid.\n    - Variable `value_component_parameters_variable_k4` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_kd` may be invalid.\n    - Variable `value_component_parameters_variable_kd` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V1P` may be invalid.\n    - Variable `value_component_parameters_variable_V1P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V1T` may be invalid.\n    - Variable `value_component_parameters_variable_V1T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V2P` may be invalid.\n    - Variable `value_component_parameters_variable_V2P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V2T` may be invalid.\n    - Variable `value_component_parameters_variable_V2T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V3P` may be invalid.\n    - Variable `value_component_parameters_variable_V3P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V3T` may be invalid.\n    - Variable `value_component_parameters_variable_V3T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V4P` may be invalid.\n    - Variable `value_component_parameters_variable_V4P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_V4T` may be invalid.\n    - Variable `value_component_parameters_variable_V4T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K1P` may be invalid.\n    - Variable `value_component_parameters_variable_K1P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K1T` may be invalid.\n    - Variable `value_component_parameters_variable_K1T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K2P` may be invalid.\n    - Variable `value_component_parameters_variable_K2P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K2T` may be invalid.\n    - Variable `value_component_parameters_variable_K2T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K3P` may be invalid.\n    - Variable `value_component_parameters_variable_K3P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K3T` may be invalid.\n    - Variable `value_component_parameters_variable_K3T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K4P` may be invalid.\n    - Variable `value_component_parameters_variable_K4P` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_K4T` may be invalid.\n    - Variable `value_component_parameters_variable_K4T` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_n` may be invalid.\n    - Variable `value_component_parameters_variable_n` may be invalid.\n      - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Model `model` may be invalid.\n    - The changes of the model may be invalid.\n      - Change 1 may be invalid.\n        - XPath could not be validated.\n      - Change 2 may be invalid.\n        - XPath could not be validated.\n      - Change 3 may be invalid.\n        - XPath could not be validated.\n      - Change 4 may be invalid.\n        - XPath could not be validated.\n      - Change 5 may be invalid.\n        - XPath could not be validated.\n      - Change 6 may be invalid.\n        - XPath could not be validated.\n      - Change 7 may be invalid.\n        - XPath could not be validated.\n      - Change 8 may be invalid.\n        - XPath could not be validated.\n      - Change 9 may be invalid.\n        - XPath could not be validated.\n      - Change 10 may be invalid.\n        - XPath could not be validated.\n      - Change 11 may be invalid.\n        - XPath could not be validated.\n      - Change 12 may be invalid.\n        - XPath could not be validated.\n      - Change 13 may be invalid.\n        - XPath could not be validated.\n  - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n    - Variable `value_component_environment_variable_time` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_M_variable_M` may be invalid.\n    - Variable `value_component_M_variable_M` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_M_variable_vs` may be invalid.\n    - Variable `value_component_M_variable_vs` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_M_variable_vm` may be invalid.\n    - Variable `value_component_M_variable_vm` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_M_variable_Km` may be invalid.\n    - Variable `value_component_M_variable_Km` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_M_variable_KI` may be invalid.\n    - Variable `value_component_M_variable_KI` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_M_variable_n` may be invalid.\n    - Variable `value_component_M_variable_n` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_FC_variable_FC` may be invalid.\n    - Variable `value_component_FC_variable_FC` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_FC_variable_Ft` may be invalid.\n    - Variable `value_component_FC_variable_Ft` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_FC_variable_ks` may be invalid.\n    - Variable `value_component_FC_variable_ks` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_FC_variable_vd` may be invalid.\n    - Variable `value_component_FC_variable_vd` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_FC_variable_Kd` may be invalid.\n    - Variable `value_component_FC_variable_Kd` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_FN_variable_FN` may be invalid.\n    - Variable `value_component_FN_variable_FN` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_k1` may be invalid.\n    - Variable `value_component_parameters_variable_k1` may be invalid.\n      - XPath could not be validated.\n  - Data generator `data_generator_value_component_parameters_variable_k2` may be invalid.\n    - Variable `value_component_parameters_variable_k2` may be invalid.\n      - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\n  - The SED-ML file at location `simulation_0.sedml` may be invalid.\n    - Model `model` may be invalid.\n      - The changes of the model may be invalid.\n        - Change 1 may be invalid.\n          - XPath could not be validated.\n        - Change 2 may be invalid.\n          - XPath could not be validated.\n        - Change 3 may be invalid.\n          - XPath could not be validated.\n        - Change 4 may be invalid.\n          - XPath could not be validated.\n        - Change 5 may be invalid.\n          - XPath could not be validated.\n        - Change 6 may be invalid.\n          - XPath could not be validated.\n        - Change 7 may be invalid.\n          - XPath could not be validated.\n        - Change 8 may be invalid.\n          - XPath could not be validated.\n        - Change 9 may be invalid.\n          - XPath could not be validated.\n        - Change 10 may be invalid.\n          - XPath could not be validated.\n        - Change 11 may be invalid.\n          - XPath could not be validated.\n        - Change 12 may be invalid.\n          - XPath could not be validated.\n        - Change 13 may be invalid.\n          - XPath could not be validated.\n        - Change 14 may be invalid.\n          - XPath could not be validated.\n        - Change 15 may be invalid.\n          - XPath could not be validated.\n        - Change 16 may be invalid.\n          - XPath could not be validated.\n        - Change 17 may be invalid.\n          - XPath could not be validated.\n        - Change 18 may be invalid.\n          - XPath could not be validated.\n        - Change 19 may be invalid.\n          - XPath could not be validated.\n        - Change 20 may be invalid.\n          - XPath could not be validated.\n        - Change 21 may be invalid.\n          - XPath could not be validated.\n        - Change 22 may be invalid.\n          - XPath could not be validated.\n        - Change 23 may be invalid.\n          - XPath could not be validated.\n        - Change 24 may be invalid.\n          - XPath could not be validated.\n        - Change 25 may be invalid.\n          - XPath could not be validated.\n        - Change 26 may be invalid.\n          - XPath could not be validated.\n        - Change 27 may be invalid.\n          - XPath could not be validated.\n        - Change 28 may be invalid.\n          - XPath could not be validated.\n        - Change 29 may be invalid.\n          - XPath could not be validated.\n        - Change 30 may be invalid.\n          - XPath could not be validated.\n        - Change 31 may be invalid.\n          - XPath could not be validated.\n        - Change 32 may be invalid.\n          - XPath could not be validated.\n        - Change 33 may be invalid.\n          - XPath could not be validated.\n        - Change 34 may be invalid.\n          - XPath could not be validated.\n        - Change 35 may be invalid.\n          - XPath could not be validated.\n        - Change 36 may be invalid.\n          - XPath could not be validated.\n        - Change 37 may be invalid.\n          - XPath could not be validated.\n        - Change 38 may be invalid.\n          - XPath could not be validated.\n        - Change 39 may be invalid.\n          - XPath could not be validated.\n        - Change 40 may be invalid.\n          - XPath could not be validated.\n        - Change 41 may be invalid.\n          - XPath could not be validated.\n        - Change 42 may be invalid.\n          - XPath could not be validated.\n        - Change 43 may be invalid.\n          - XPath could not be validated.\n        - Change 44 may be invalid.\n          - XPath could not be validated.\n        - Change 45 may be invalid.\n          - XPath could not be validated.\n        - Change 46 may be invalid.\n          - XPath could not be validated.\n        - Change 47 may be invalid.\n          - XPath could not be validated.\n        - Change 48 may be invalid.\n          - XPath could not be validated.\n    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n      - Variable `value_component_environment_variable_time` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MP_variable_MP` may be invalid.\n      - Variable `value_component_MP_variable_MP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MP_variable_vsP` may be invalid.\n      - Variable `value_component_MP_variable_vsP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MP_variable_vmP` may be invalid.\n      - Variable `value_component_MP_variable_vmP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MP_variable_KmP` may be invalid.\n      - Variable `value_component_MP_variable_KmP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MP_variable_KIP` may be invalid.\n      - Variable `value_component_MP_variable_KIP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_P0_variable_P0` may be invalid.\n      - Variable `value_component_P0_variable_P0` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_P0_variable_ksP` may be invalid.\n      - Variable `value_component_P0_variable_ksP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_P1_variable_P1` may be invalid.\n      - Variable `value_component_P1_variable_P1` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_P2_variable_P2` may be invalid.\n      - Variable `value_component_P2_variable_P2` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_P2_variable_vdP` may be invalid.\n      - Variable `value_component_P2_variable_vdP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_P2_variable_KdP` may be invalid.\n      - Variable `value_component_P2_variable_KdP` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_P2_variable_Pt` may be invalid.\n      - Variable `value_component_P2_variable_Pt` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MT_variable_MT` may be invalid.\n      - Variable `value_component_MT_variable_MT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MT_variable_vsT` may be invalid.\n      - Variable `value_component_MT_variable_vsT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MT_variable_vmT` may be invalid.\n      - Variable `value_component_MT_variable_vmT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MT_variable_KmT` may be invalid.\n      - Variable `value_component_MT_variable_KmT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_MT_variable_KIT` may be invalid.\n      - Variable `value_component_MT_variable_KIT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_T0_variable_T0` may be invalid.\n      - Variable `value_component_T0_variable_T0` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_T0_variable_ksT` may be invalid.\n      - Variable `value_component_T0_variable_ksT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_T1_variable_T1` may be invalid.\n      - Variable `value_component_T1_variable_T1` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_T2_variable_T2` may be invalid.\n      - Variable `value_component_T2_variable_T2` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_T2_variable_vdT` may be invalid.\n      - Variable `value_component_T2_variable_vdT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_T2_variable_KdT` may be invalid.\n      - Variable `value_component_T2_variable_KdT` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_C_variable_C` may be invalid.\n      - Variable `value_component_C_variable_C` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_C_variable_kdC` may be invalid.\n      - Variable `value_component_C_variable_kdC` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_CN_variable_CN` may be invalid.\n      - Variable `value_component_CN_variable_CN` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_CN_variable_kdN` may be invalid.\n      - Variable `value_component_CN_variable_kdN` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_k1` may be invalid.\n      - Variable `value_component_parameters_variable_k1` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_k2` may be invalid.\n      - Variable `value_component_parameters_variable_k2` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_k3` may be invalid.\n      - Variable `value_component_parameters_variable_k3` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_k4` may be invalid.\n      - Variable `value_component_parameters_variable_k4` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_kd` may be invalid.\n      - Variable `value_component_parameters_variable_kd` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V1P` may be invalid.\n      - Variable `value_component_parameters_variable_V1P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V1T` may be invalid.\n      - Variable `value_component_parameters_variable_V1T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V2P` may be invalid.\n      - Variable `value_component_parameters_variable_V2P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V2T` may be invalid.\n      - Variable `value_component_parameters_variable_V2T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V3P` may be invalid.\n      - Variable `value_component_parameters_variable_V3P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V3T` may be invalid.\n      - Variable `value_component_parameters_variable_V3T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V4P` may be invalid.\n      - Variable `value_component_parameters_variable_V4P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_V4T` may be invalid.\n      - Variable `value_component_parameters_variable_V4T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K1P` may be invalid.\n      - Variable `value_component_parameters_variable_K1P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K1T` may be invalid.\n      - Variable `value_component_parameters_variable_K1T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K2P` may be invalid.\n      - Variable `value_component_parameters_variable_K2P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K2T` may be invalid.\n      - Variable `value_component_parameters_variable_K2T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K3P` may be invalid.\n      - Variable `value_component_parameters_variable_K3P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K3T` may be invalid.\n      - Variable `value_component_parameters_variable_K3T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K4P` may be invalid.\n      - Variable `value_component_parameters_variable_K4P` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_K4T` may be invalid.\n      - Variable `value_component_parameters_variable_K4T` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_n` may be invalid.\n      - Variable `value_component_parameters_variable_n` may be invalid.\n        - XPath could not be validated.\n  - The SED-ML file at location `simulation_1.sedml` may be invalid.\n    - Model `model` may be invalid.\n      - The changes of the model may be invalid.\n        - Change 1 may be invalid.\n          - XPath could not be validated.\n        - Change 2 may be invalid.\n          - XPath could not be validated.\n        - Change 3 may be invalid.\n          - XPath could not be validated.\n        - Change 4 may be invalid.\n          - XPath could not be validated.\n        - Change 5 may be invalid.\n          - XPath could not be validated.\n        - Change 6 may be invalid.\n          - XPath could not be validated.\n        - Change 7 may be invalid.\n          - XPath could not be validated.\n        - Change 8 may be invalid.\n          - XPath could not be validated.\n        - Change 9 may be invalid.\n          - XPath could not be validated.\n        - Change 10 may be invalid.\n          - XPath could not be validated.\n        - Change 11 may be invalid.\n          - XPath could not be validated.\n        - Change 12 may be invalid.\n          - XPath could not be validated.\n        - Change 13 may be invalid.\n          - XPath could not be validated.\n    - Data generator `data_generator_value_component_environment_variable_time` may be invalid.\n      - Variable `value_component_environment_variable_time` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_M_variable_M` may be invalid.\n      - Variable `value_component_M_variable_M` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_M_variable_vs` may be invalid.\n      - Variable `value_component_M_variable_vs` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_M_variable_vm` may be invalid.\n      - Variable `value_component_M_variable_vm` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_M_variable_Km` may be invalid.\n      - Variable `value_component_M_variable_Km` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_M_variable_KI` may be invalid.\n      - Variable `value_component_M_variable_KI` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_M_variable_n` may be invalid.\n      - Variable `value_component_M_variable_n` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_FC_variable_FC` may be invalid.\n      - Variable `value_component_FC_variable_FC` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_FC_variable_Ft` may be invalid.\n      - Variable `value_component_FC_variable_Ft` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_FC_variable_ks` may be invalid.\n      - Variable `value_component_FC_variable_ks` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_FC_variable_vd` may be invalid.\n      - Variable `value_component_FC_variable_vd` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_FC_variable_Kd` may be invalid.\n      - Variable `value_component_FC_variable_Kd` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_FN_variable_FN` may be invalid.\n      - Variable `value_component_FN_variable_FN` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_k1` may be invalid.\n      - Variable `value_component_parameters_variable_k1` may be invalid.\n        - XPath could not be validated.\n    - Data generator `data_generator_value_component_parameters_variable_k2` may be invalid.\n      - Variable `value_component_parameters_variable_k2` may be invalid.\n        - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\nArchive contains 2 SED-ML documents with 2 models, 2 simulations, 2 tasks, 2 reports, and 0 plots:\n  simulation_0.sedml:\n    Tasks (1):\n      task\n    Reports (1):\n      report: 50 data sets\n  simulation_1.sedml:\n    Tasks (1):\n      task\n    Reports (1):\n      report: 15 data sets\n\nExecuting SED-ML file 1: simulation_0.sedml ...\nExecuting SED-ML file 2: simulation_1.sedml ...\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 2 SED documents:\n  SED documents (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Tasks (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Outputs (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 37.9 KiB/37.9 KiB (482.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/rawLog.txt\nCompleted 53.3 KiB/53.3 KiB (397.8 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 93%)\n  adding: outputs/reports.h5 (deflated 86%)\n  adding: rawLog.txt (deflated 93%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 38.5 KiB/38.5 KiB (387.9 KiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/outputs/reports.h5\nCompleted 12.2 KiB/51.0 KiB (144.9 KiB/s) with 2 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/output.zip\nCompleted 12.2 KiB/51.0 KiB (144.9 KiB/s) with 1 file(s) remaining\rCompleted 51.0 KiB/51.0 KiB (416.7 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/leloup_gonze_goldbeter_1999_a.session.xml  \n  inflating: contents/leloup_1999_tagged.xul  \n  inflating: contents/leloup_1999.png  \n  inflating: contents/leloup_1999.svg  \n  inflating: contents/leloup_1999.ai  \n  inflating: contents/leloup_gonze_goldbeter_1999_b.session.xml  \n  inflating: contents/leloup_gonze_goldbeter_1999_variant01.xul  \n  inflating: contents/leloup_1999_tagged_2.xul  \n  inflating: contents/leloup_1999_tagged_2.svg  \n  inflating: contents/leloup_gonze_goldbeter_1999_a.cellml  \n  inflating: contents/leloup_gonze_goldbeter_1999_b.cellml  \n  inflating: contents/leloup_1999_tagged.svg  \n  inflating: contents/leloup_gonze_goldbeter_1999.xul  \n  inflating: contents/simulation_0.sedml  \n  inflating: contents/simulation_1.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 59.0 KiB/872.7 KiB (419.0 KiB/s) with 17 file(s) remaining\rupload: contents/leloup_1999_tagged.xul to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_1999_tagged.xul\nCompleted 59.0 KiB/872.7 KiB (419.0 KiB/s) with 16 file(s) remaining\rCompleted 115.2 KiB/872.7 KiB (800.5 KiB/s) with 16 file(s) remaining\rupload: contents/leloup_1999.png to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_1999.png\nCompleted 115.2 KiB/872.7 KiB (800.5 KiB/s) with 15 file(s) remaining\rCompleted 166.8 KiB/872.7 KiB (1005.3 KiB/s) with 15 file(s) remaining\rupload: contents/leloup_gonze_goldbeter_1999_a.cellml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_gonze_goldbeter_1999_a.cellml\nCompleted 166.8 KiB/872.7 KiB (1005.3 KiB/s) with 14 file(s) remaining\rCompleted 316.9 KiB/872.7 KiB (1.8 MiB/s) with 14 file(s) remaining   \rupload: contents/leloup_gonze_goldbeter_1999.xul to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_gonze_goldbeter_1999.xul\nCompleted 316.9 KiB/872.7 KiB (1.8 MiB/s) with 13 file(s) remaining\rCompleted 342.3 KiB/872.7 KiB (1.9 MiB/s) with 13 file(s) remaining\rupload: contents/leloup_gonze_goldbeter_1999_a.session.xml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_gonze_goldbeter_1999_a.session.xml\nCompleted 342.3 KiB/872.7 KiB (1.9 MiB/s) with 12 file(s) remaining\rCompleted 358.2 KiB/872.7 KiB (1.9 MiB/s) with 12 file(s) remaining\rupload: contents/leloup_gonze_goldbeter_1999_b.session.xml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_gonze_goldbeter_1999_b.session.xml\nCompleted 358.2 KiB/872.7 KiB (1.9 MiB/s) with 11 file(s) remaining\rCompleted 380.6 KiB/872.7 KiB (1.8 MiB/s) with 11 file(s) remaining\rupload: contents/leloup_gonze_goldbeter_1999_b.cellml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_gonze_goldbeter_1999_b.cellml\nCompleted 380.6 KiB/872.7 KiB (1.8 MiB/s) with 10 file(s) remaining\rCompleted 467.7 KiB/872.7 KiB (2.1 MiB/s) with 10 file(s) remaining\rupload: contents/leloup_1999.ai to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_1999.ai\nCompleted 467.7 KiB/872.7 KiB (2.1 MiB/s) with 9 file(s) remaining\rCompleted 486.3 KiB/872.7 KiB (2.1 MiB/s) with 9 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/metadata.rdf\nCompleted 486.3 KiB/872.7 KiB (2.1 MiB/s) with 8 file(s) remaining\rCompleted 611.8 KiB/872.7 KiB (2.5 MiB/s) with 8 file(s) remaining\rupload: contents/leloup_gonze_goldbeter_1999_variant01.xul to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_gonze_goldbeter_1999_variant01.xul\nCompleted 611.8 KiB/872.7 KiB (2.5 MiB/s) with 7 file(s) remaining\rCompleted 686.8 KiB/872.7 KiB (2.6 MiB/s) with 7 file(s) remaining\rCompleted 737.6 KiB/872.7 KiB (2.8 MiB/s) with 7 file(s) remaining\rupload: contents/leloup_1999.svg to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_1999.svg\nCompleted 737.6 KiB/872.7 KiB (2.8 MiB/s) with 6 file(s) remaining\rupload: contents/leloup_1999_tagged.svg to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_1999_tagged.svg\nCompleted 737.6 KiB/872.7 KiB (2.8 MiB/s) with 5 file(s) remaining\rCompleted 768.1 KiB/872.7 KiB (2.8 MiB/s) with 5 file(s) remaining\rupload: contents/leloup_1999_tagged_2.svg to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_1999_tagged_2.svg\nCompleted 768.1 KiB/872.7 KiB (2.8 MiB/s) with 4 file(s) remaining\rCompleted 770.2 KiB/872.7 KiB (2.7 MiB/s) with 4 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/manifest.xml\nCompleted 770.2 KiB/872.7 KiB (2.7 MiB/s) with 3 file(s) remaining\rCompleted 820.1 KiB/872.7 KiB (2.8 MiB/s) with 3 file(s) remaining\rupload: contents/simulation_0.sedml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/simulation_0.sedml\nCompleted 820.1 KiB/872.7 KiB (2.8 MiB/s) with 2 file(s) remaining\rCompleted 835.0 KiB/872.7 KiB (2.6 MiB/s) with 2 file(s) remaining\rupload: contents/simulation_1.sedml to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/simulation_1.sedml\nCompleted 835.0 KiB/872.7 KiB (2.6 MiB/s) with 1 file(s) remaining\rCompleted 872.7 KiB/872.7 KiB (2.0 MiB/s) with 1 file(s) remaining\rupload: contents/leloup_1999_tagged_2.xul to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/contents/leloup_1999_tagged_2.xul\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 44.9 KiB/44.9 KiB (320.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261761090c6a19595578e5c/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /simulation_0.sedml\ncreating dataset /simulation_0.sedml/report, shape: (50, 11), type: float64\ndataset created, uuid: d-f5703127-b7a2640c-f989-fa5a92-e4ac2d, chunk_size: (50, 11)\ncreating group /simulation_1.sedml\ncreating dataset /simulation_1.sedml/report, shape: (15, 11), type: float64\ndataset created, uuid: d-f5703127-b7a2640c-c890-34887f-053f88, chunk_size: (15, 11)\ncreating attribute combineArchiveLocation in /simulation_0.sedml\ncreating attribute uri in /simulation_0.sedml\ncreating attribute _type in /simulation_0.sedml/report\ncreating attribute sedmlDataSetDataTypes in /simulation_0.sedml/report\ncreating attribute sedmlDataSetIds in /simulation_0.sedml/report\ncreating attribute sedmlDataSetLabels in /simulation_0.sedml/report\ncreating attribute sedmlDataSetNames in /simulation_0.sedml/report\ncreating attribute sedmlDataSetShapes in /simulation_0.sedml/report\ncreating attribute sedmlId in /simulation_0.sedml/report\ncreating attribute uri in /simulation_0.sedml/report\ncreating attribute combineArchiveLocation in /simulation_1.sedml\ncreating attribute uri in /simulation_1.sedml\ncreating attribute _type in /simulation_1.sedml/report\ncreating attribute sedmlDataSetDataTypes in /simulation_1.sedml/report\ncreating attribute sedmlDataSetIds in /simulation_1.sedml/report\ncreating attribute sedmlDataSetLabels in /simulation_1.sedml/report\ncreating attribute sedmlDataSetNames in /simulation_1.sedml/report\ncreating attribute sedmlDataSetShapes in /simulation_1.sedml/report\ncreating attribute sedmlId in /simulation_1.sedml/report\ncreating attribute uri in /simulation_1.sedml/report\ncreate_links: /\ngot link: simulation_0.sedml\ngot link: simulation_1.sedml\ncreate_links: /simulation_0.sedml\ngot link: report\ncreate_links: /simulation_1.sedml\ngot link: report\nwrite_dataset src: /simulation_0.sedml/report to tgt: /simulation_0.sedml/report, shape: (50, 11), type: float64\niterating over chunks for /simulation_0.sedml/report\nwriting dataset data for slice: (slice(0, 50, 1), slice(0, 11, 1))\ndone with dataload for /simulation_0.sedml/report\nwrite_dataset src: /simulation_1.sedml/report to tgt: /simulation_1.sedml/report, shape: (15, 11), type: float64\niterating over chunks for /simulation_1.sedml/report\nwriting dataset data for slice: (slice(0, 15, 1), slice(0, 11, 1))\ndone with dataload for /simulation_1.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6261761090c6a19595578e5c\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":2.131276,"sedDocuments":[{"location":"simulation_0.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"  Found 1 tasks and 1 outputs:\n    Tasks:\n      `task`\n    Outputs:\n      `report`\n  Executing task 1: `task`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":0.885792,"tasks":[{"id":"task","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `value_component_P2_variable_vdP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MT_variable_KIT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K3T` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_k4` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V3T` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_T0_variable_ksT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K4P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V4P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_C_variable_C` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K2P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_T0_variable_T0` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_P2_variable_KdP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_k1` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V2P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_T1_variable_T1` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K1P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V1P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_k2` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_T2_variable_T2` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_kd` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K2T` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MP_variable_KIP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V1T` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MT_variable_vmT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_T2_variable_vdT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MP_variable_KmP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V2T` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_CN_variable_CN` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_P0_variable_ksP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MT_variable_MT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_P2_variable_P2` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_k3` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_P0_variable_P0` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V4T` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_n` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_P2_variable_Pt` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K1T` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_environment_variable_time` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_T2_variable_KdT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MT_variable_KmT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MP_variable_vsP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MT_variable_vsT` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K3P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_CN_variable_kdN` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MP_variable_MP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_V3P` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_P1_variable_P1` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_C_variable_kdC` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_MP_variable_vmP` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_K4T` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.719188,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[]}]}],"outputs":[{"id":"report","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.027011,"dataSets":[{"id":"data_set_value_component_environment_variable_time","status":"SUCCEEDED"},{"id":"data_set_value_component_MP_variable_MP","status":"SUCCEEDED"},{"id":"data_set_value_component_MP_variable_vsP","status":"SUCCEEDED"},{"id":"data_set_value_component_MP_variable_vmP","status":"SUCCEEDED"},{"id":"data_set_value_component_MP_variable_KmP","status":"SUCCEEDED"},{"id":"data_set_value_component_MP_variable_KIP","status":"SUCCEEDED"},{"id":"data_set_value_component_P0_variable_P0","status":"SUCCEEDED"},{"id":"data_set_value_component_P0_variable_ksP","status":"SUCCEEDED"},{"id":"data_set_value_component_P1_variable_P1","status":"SUCCEEDED"},{"id":"data_set_value_component_P2_variable_P2","status":"SUCCEEDED"},{"id":"data_set_value_component_P2_variable_vdP","status":"SUCCEEDED"},{"id":"data_set_value_component_P2_variable_KdP","status":"SUCCEEDED"},{"id":"data_set_value_component_P2_variable_Pt","status":"SUCCEEDED"},{"id":"data_set_value_component_MT_variable_MT","status":"SUCCEEDED"},{"id":"data_set_value_component_MT_variable_vsT","status":"SUCCEEDED"},{"id":"data_set_value_component_MT_variable_vmT","status":"SUCCEEDED"},{"id":"data_set_value_component_MT_variable_KmT","status":"SUCCEEDED"},{"id":"data_set_value_component_MT_variable_KIT","status":"SUCCEEDED"},{"id":"data_set_value_component_T0_variable_T0","status":"SUCCEEDED"},{"id":"data_set_value_component_T0_variable_ksT","status":"SUCCEEDED"},{"id":"data_set_value_component_T1_variable_T1","status":"SUCCEEDED"},{"id":"data_set_value_component_T2_variable_T2","status":"SUCCEEDED"},{"id":"data_set_value_component_T2_variable_vdT","status":"SUCCEEDED"},{"id":"data_set_value_component_T2_variable_KdT","status":"SUCCEEDED"},{"id":"data_set_value_component_C_variable_C","status":"SUCCEEDED"},{"id":"data_set_value_component_C_variable_kdC","status":"SUCCEEDED"},{"id":"data_set_value_component_CN_variable_CN","status":"SUCCEEDED"},{"id":"data_set_value_component_CN_variable_kdN","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_k1","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_k2","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_k3","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_k4","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_kd","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V1P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V1T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V2P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V2T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V3P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V3T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V4P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_V4T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K1P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K1T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K2P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K2T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K3P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K3T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K4P","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_K4T","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_n","status":"SUCCEEDED"}]}]},{"location":"simulation_1.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"  Found 1 tasks and 1 outputs:\n    Tasks:\n      `task`\n    Outputs:\n      `report`\n  Executing task 1: `task`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":0.529537,"tasks":[{"id":"task","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `value_component_parameters_variable_k2` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_FC_variable_Kd` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_M_variable_M` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_M_variable_n` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_FC_variable_FC` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_M_variable_vs` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_environment_variable_time` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_FC_variable_Ft` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_M_variable_vm` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_FC_variable_ks` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_FN_variable_FN` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_parameters_variable_k1` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_FC_variable_vd` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_M_variable_KI` may be invalid.\n  - XPath could not be validated.\n- Variable `value_component_M_variable_Km` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.374651,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[]}]}],"outputs":[{"id":"report","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.017508,"dataSets":[{"id":"data_set_value_component_environment_variable_time","status":"SUCCEEDED"},{"id":"data_set_value_component_M_variable_M","status":"SUCCEEDED"},{"id":"data_set_value_component_M_variable_vs","status":"SUCCEEDED"},{"id":"data_set_value_component_M_variable_vm","status":"SUCCEEDED"},{"id":"data_set_value_component_M_variable_Km","status":"SUCCEEDED"},{"id":"data_set_value_component_M_variable_KI","status":"SUCCEEDED"},{"id":"data_set_value_component_M_variable_n","status":"SUCCEEDED"},{"id":"data_set_value_component_FC_variable_FC","status":"SUCCEEDED"},{"id":"data_set_value_component_FC_variable_Ft","status":"SUCCEEDED"},{"id":"data_set_value_component_FC_variable_ks","status":"SUCCEEDED"},{"id":"data_set_value_component_FC_variable_vd","status":"SUCCEEDED"},{"id":"data_set_value_component_FC_variable_Kd","status":"SUCCEEDED"},{"id":"data_set_value_component_FN_variable_FN","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_k1","status":"SUCCEEDED"},{"id":"data_set_value_component_parameters_variable_k2","status":"SUCCEEDED"}]}]}]}