{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n % Total % Received % Xferd Average Speed Time Time Time Current\n Dload Upload Total Spent Left Speed\n\r 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0\r100 139 100 139 0 0 454 0 --:--:-- --:--:-- --:--:-- 455\n\r100 1984k 100 1984k 0 0 4280k 0 --:--:-- --:--:-- --:--:-- 4280k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO: Using cached SIF image\nTraceback (most recent call last):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 247, in \n if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 213, in update_paths\n update_scripts(scripts_dir, new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 125, in update_scripts\n update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 118, in update_script\n with open(script_filename, 'w') as f:\nOSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive may be invalid.\n - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3A.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2D.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3B.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2A.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3D.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2E.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2F.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3C.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2C.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2B.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig3A.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3A.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig2D.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2D.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig3B.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3B.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig2A.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2A.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig3D.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3D.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig2E.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2E.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig2F.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2F.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig3C.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3C.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig2C.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2C.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - The SED-ML file at location `Weinstein_2000_AE1_Fig2B.sedml` may be invalid.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2B.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\nArchive contains 10 SED-ML documents with 10 models, 10 simulations, 20 tasks, 0 reports, and 10 plots:\n Weinstein_2000_AE1_Fig2A.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig2B.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig2C.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig2D.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig2E.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig2F.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig3A.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig3B.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig3C.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n Weinstein_2000_AE1_Fig3D.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (1):\n plot1: 1 curves\n\nExecuting SED-ML file 1: Weinstein_2000_AE1_Fig3A.sedml ...\nExecuting SED-ML file 2: Weinstein_2000_AE1_Fig2D.sedml ...\nExecuting SED-ML file 3: Weinstein_2000_AE1_Fig3B.sedml ...\nExecuting SED-ML file 4: Weinstein_2000_AE1_Fig2A.sedml ...\nExecuting SED-ML file 5: Weinstein_2000_AE1_Fig3D.sedml ...\nExecuting SED-ML file 6: Weinstein_2000_AE1_Fig2E.sedml ...\nExecuting SED-ML file 7: Weinstein_2000_AE1_Fig2F.sedml ...\nExecuting SED-ML file 8: Weinstein_2000_AE1_Fig3C.sedml ...\nExecuting SED-ML file 9: Weinstein_2000_AE1_Fig2C.sedml ...\nExecuting SED-ML file 10: Weinstein_2000_AE1_Fig2B.sedml ...\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 10 SED documents:\n SED documents (10):\n Succeeded: 10\n Skipped: 0\n Failed: 0\n Tasks (20):\n Succeeded: 20\n Skipped: 0\n Failed: 0\n Outputs (10):\n Succeeded: 10\n Skipped: 0\n Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 16.3 KiB/16.3 KiB (152.1 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/rawLog.txt\nCompleted 51.9 KiB/51.9 KiB (346.9 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n adding: outputs/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig2B.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig2B.sedml/plot1.pdf (deflated 32%)\n adding: outputs/log.yml (deflated 95%)\n adding: outputs/Weinstein_2000_AE1_Fig2D.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig2D.sedml/plot1.pdf (deflated 31%)\n adding: outputs/Weinstein_2000_AE1_Fig2C.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig2C.sedml/plot1.pdf (deflated 33%)\n adding: outputs/Weinstein_2000_AE1_Fig3D.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig3D.sedml/plot1.pdf (deflated 31%)\n adding: outputs/Weinstein_2000_AE1_Fig3A.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig3A.sedml/plot1.pdf (deflated 32%)\n adding: outputs/Weinstein_2000_AE1_Fig3C.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig3C.sedml/plot1.pdf (deflated 33%)\n adding: outputs/Weinstein_2000_AE1_Fig2A.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig2A.sedml/plot1.pdf (deflated 33%)\n adding: outputs/Weinstein_2000_AE1_Fig3B.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig3B.sedml/plot1.pdf (deflated 32%)\n adding: outputs/Weinstein_2000_AE1_Fig2E.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig2E.sedml/plot1.pdf (deflated 31%)\n adding: outputs/Weinstein_2000_AE1_Fig2F.sedml/ (stored 0%)\n adding: outputs/Weinstein_2000_AE1_Fig2F.sedml/plot1.pdf (deflated 32%)\n adding: outputs/reports.h5 (deflated 18%)\n adding: rawLog.txt (deflated 90%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/2.6 MiB (4.7 MiB/s) with 1 file(s) remaining\rCompleted 512.0 KiB/2.6 MiB (8.5 MiB/s) with 1 file(s) remaining\rCompleted 768.0 KiB/2.6 MiB (11.7 MiB/s) with 1 file(s) remaining\rCompleted 1.0 MiB/2.6 MiB (15.1 MiB/s) with 1 file(s) remaining \rCompleted 1.2 MiB/2.6 MiB (18.3 MiB/s) with 1 file(s) remaining \rCompleted 1.5 MiB/2.6 MiB (20.7 MiB/s) with 1 file(s) remaining \rCompleted 1.8 MiB/2.6 MiB (23.6 MiB/s) with 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remaining\rupload: contents/documentation-fig3a.html to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/documentation-fig3a.html\nCompleted 152.6 KiB/2.4 MiB (430.3 KiB/s) with 27 file(s) remaining\rCompleted 154.0 KiB/2.4 MiB (426.3 KiB/s) with 27 file(s) remaining\rupload: contents/documentation-fig2d.html to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/documentation-fig2d.html\nCompleted 154.0 KiB/2.4 MiB (426.3 KiB/s) with 26 file(s) remaining\rCompleted 155.5 KiB/2.4 MiB (423.8 KiB/s) with 26 file(s) remaining\rCompleted 157.0 KiB/2.4 MiB (426.3 KiB/s) with 26 file(s) remaining\rupload: contents/documentation-fig2e.html to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/documentation-fig2e.html\nCompleted 157.0 KiB/2.4 MiB (426.3 KiB/s) with 25 file(s) remaining\rCompleted 158.5 KiB/2.4 MiB (425.9 KiB/s) with 25 file(s) remaining\rupload: contents/documentation-fig3b.html to 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to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/screenshots/fig2a.png\nCompleted 749.3 KiB/2.4 MiB (1.5 MiB/s) with 13 file(s) remaining\rCompleted 928.6 KiB/2.4 MiB (1.8 MiB/s) with 13 file(s) remaining\rupload: contents/screenshots/fig2d.png to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/screenshots/fig2d.png\nCompleted 928.6 KiB/2.4 MiB (1.8 MiB/s) with 12 file(s) remaining\rCompleted 1.2 MiB/2.4 MiB (2.3 MiB/s) with 12 file(s) remaining \rCompleted 1.3 MiB/2.4 MiB (2.6 MiB/s) with 12 file(s) remaining \rupload: contents/screenshots/fig2f.png to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/screenshots/fig2f.png\nCompleted 1.3 MiB/2.4 MiB (2.6 MiB/s) with 11 file(s) remaining\rCompleted 1.3 MiB/2.4 MiB (2.5 MiB/s) with 11 file(s) remaining\rupload: contents/screenshots/diagram.svg to 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s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/screenshots/weinstein_2000.png\nCompleted 2.2 MiB/2.4 MiB (3.6 MiB/s) with 3 file(s) remaining\rCompleted 2.2 MiB/2.4 MiB (3.6 MiB/s) with 3 file(s) remaining\rupload: contents/Weinstein_2000_AE1_Fig2A.sedml to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/Weinstein_2000_AE1_Fig2A.sedml\nCompleted 2.2 MiB/2.4 MiB (3.6 MiB/s) with 2 file(s) remaining\rCompleted 2.3 MiB/2.4 MiB (3.8 MiB/s) with 2 file(s) remaining\rupload: contents/screenshots/fig2b.png to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/screenshots/fig2b.png\nCompleted 2.3 MiB/2.4 MiB (3.8 MiB/s) with 1 file(s) remaining\rCompleted 2.4 MiB/2.4 MiB (3.8 MiB/s) with 1 file(s) remaining\rupload: contents/Weinstein_2000_AE1_Fig2B.sedml to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/contents/Weinstein_2000_AE1_Fig2B.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 39.5 KiB/39.5 KiB (439.8 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261742f4679625b3246e3a2/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /Weinstein_2000_AE1_Fig2A.sedml\ncreating dataset /Weinstein_2000_AE1_Fig2A.sedml/plot1, shape: (2, 1, 1, 5001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-1413-72a732-a1fb0f, chunk_size: (2, 1, 1, 5001)\ncreating group /Weinstein_2000_AE1_Fig2B.sedml\ncreating dataset /Weinstein_2000_AE1_Fig2B.sedml/plot1, shape: (2, 1, 1, 25001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-f81b-7696d5-36c9e7, chunk_size: (2, 1, 1, 25001)\ncreating group /Weinstein_2000_AE1_Fig2C.sedml\ncreating dataset /Weinstein_2000_AE1_Fig2C.sedml/plot1, shape: (2, 1, 1, 20001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-880e-9cda7a-66188b, chunk_size: (2, 1, 1, 20001)\ncreating group /Weinstein_2000_AE1_Fig2D.sedml\ncreating dataset /Weinstein_2000_AE1_Fig2D.sedml/plot1, shape: (2, 1, 1, 80001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-dda0-970a18-40da32, chunk_size: (2, 1, 1, 80001)\ncreating group /Weinstein_2000_AE1_Fig2E.sedml\ncreating dataset /Weinstein_2000_AE1_Fig2E.sedml/plot1, shape: (2, 1, 1, 80001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-0c11-921f2e-743a4b, chunk_size: (2, 1, 1, 80001)\ncreating group /Weinstein_2000_AE1_Fig2F.sedml\ncreating dataset /Weinstein_2000_AE1_Fig2F.sedml/plot1, shape: (2, 1, 1, 50001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-f56a-535315-b51cb0, chunk_size: (2, 1, 1, 50001)\ncreating group /Weinstein_2000_AE1_Fig3A.sedml\ncreating dataset /Weinstein_2000_AE1_Fig3A.sedml/plot1, shape: (2, 1, 1, 5001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-b88b-8e6f86-ee1814, chunk_size: (2, 1, 1, 5001)\ncreating group /Weinstein_2000_AE1_Fig3B.sedml\ncreating dataset /Weinstein_2000_AE1_Fig3B.sedml/plot1, shape: (2, 1, 1, 12001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-387b-a066e1-3d7068, chunk_size: (2, 1, 1, 12001)\ncreating group /Weinstein_2000_AE1_Fig3C.sedml\ncreating dataset /Weinstein_2000_AE1_Fig3C.sedml/plot1, shape: (2, 1, 1, 12001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-7ee8-952466-3975b2, chunk_size: (2, 1, 1, 12001)\ncreating group /Weinstein_2000_AE1_Fig3D.sedml\ncreating dataset /Weinstein_2000_AE1_Fig3D.sedml/plot1, shape: (2, 1, 1, 12001), type: float64\ndataset created, uuid: d-53aa9d5a-d8a49297-af96-fd9860-ebaa45, chunk_size: (2, 1, 1, 12001)\ncreating attribute combineArchiveLocation in /Weinstein_2000_AE1_Fig2A.sedml\ncreating attribute uri in /Weinstein_2000_AE1_Fig2A.sedml\ncreating attribute _type in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute sedmlDataSetIds in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute sedmlDataSetLabels in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute sedmlDataSetNames in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute sedmlDataSetShapes in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute sedmlId in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute uri in /Weinstein_2000_AE1_Fig2A.sedml/plot1\ncreating attribute combineArchiveLocation in /Weinstein_2000_AE1_Fig2B.sedml\ncreating attribute uri in /Weinstein_2000_AE1_Fig2B.sedml\ncreating attribute _type in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute sedmlDataSetIds in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute sedmlDataSetLabels in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute sedmlDataSetNames in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute sedmlDataSetShapes in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute sedmlId in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute uri in /Weinstein_2000_AE1_Fig2B.sedml/plot1\ncreating attribute combineArchiveLocation in /Weinstein_2000_AE1_Fig2C.sedml\ncreating attribute uri in /Weinstein_2000_AE1_Fig2C.sedml\ncreating attribute _type in /Weinstein_2000_AE1_Fig2C.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /Weinstein_2000_AE1_Fig2C.sedml/plot1\ncreating attribute sedmlDataSetIds in /Weinstein_2000_AE1_Fig2C.sedml/plot1\ncreating attribute sedmlDataSetLabels in /Weinstein_2000_AE1_Fig2C.sedml/plot1\ncreating attribute sedmlDataSetNames in 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/Weinstein_2000_AE1_Fig3A.sedml/plot1\ncreating attribute sedmlDataSetShapes in /Weinstein_2000_AE1_Fig3A.sedml/plot1\ncreating attribute sedmlId in /Weinstein_2000_AE1_Fig3A.sedml/plot1\ncreating attribute uri in /Weinstein_2000_AE1_Fig3A.sedml/plot1\ncreating attribute combineArchiveLocation in /Weinstein_2000_AE1_Fig3B.sedml\ncreating attribute uri in /Weinstein_2000_AE1_Fig3B.sedml\ncreating attribute _type in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute sedmlDataSetIds in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute sedmlDataSetLabels in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute sedmlDataSetNames in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute sedmlDataSetShapes in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute sedmlId in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute uri in /Weinstein_2000_AE1_Fig3B.sedml/plot1\ncreating attribute combineArchiveLocation in /Weinstein_2000_AE1_Fig3C.sedml\ncreating attribute uri in /Weinstein_2000_AE1_Fig3C.sedml\ncreating attribute _type in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute sedmlDataSetIds in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute sedmlDataSetLabels in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute sedmlDataSetNames in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute sedmlDataSetShapes in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute sedmlId in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute uri in /Weinstein_2000_AE1_Fig3C.sedml/plot1\ncreating attribute combineArchiveLocation in /Weinstein_2000_AE1_Fig3D.sedml\ncreating attribute uri in /Weinstein_2000_AE1_Fig3D.sedml\ncreating attribute _type in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreating attribute sedmlDataSetIds in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreating attribute sedmlDataSetLabels in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreating attribute sedmlDataSetNames in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreating attribute sedmlDataSetShapes in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreating attribute sedmlId in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreating attribute uri in /Weinstein_2000_AE1_Fig3D.sedml/plot1\ncreate_links: /\ngot link: Weinstein_2000_AE1_Fig2A.sedml\ngot link: Weinstein_2000_AE1_Fig2B.sedml\ngot link: Weinstein_2000_AE1_Fig2C.sedml\ngot link: Weinstein_2000_AE1_Fig2D.sedml\ngot link: Weinstein_2000_AE1_Fig2E.sedml\ngot link: Weinstein_2000_AE1_Fig2F.sedml\ngot link: Weinstein_2000_AE1_Fig3A.sedml\ngot link: Weinstein_2000_AE1_Fig3B.sedml\ngot link: Weinstein_2000_AE1_Fig3C.sedml\ngot link: Weinstein_2000_AE1_Fig3D.sedml\ncreate_links: /Weinstein_2000_AE1_Fig2A.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig2B.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig2C.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig2D.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig2E.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig2F.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig3A.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig3B.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig3C.sedml\ngot link: plot1\ncreate_links: /Weinstein_2000_AE1_Fig3D.sedml\ngot link: plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig2A.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig2A.sedml/plot1, shape: (2, 1, 1, 5001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig2A.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 5001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig2A.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig2B.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig2B.sedml/plot1, shape: (2, 1, 1, 25001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig2B.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 25001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig2B.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig2C.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig2C.sedml/plot1, shape: (2, 1, 1, 20001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig2C.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 20001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig2C.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig2D.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig2D.sedml/plot1, shape: (2, 1, 1, 80001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig2D.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 80001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig2D.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig2E.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig2E.sedml/plot1, shape: (2, 1, 1, 80001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig2E.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 80001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig2E.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig2F.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig2F.sedml/plot1, shape: (2, 1, 1, 50001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig2F.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 50001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig2F.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig3A.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig3A.sedml/plot1, shape: (2, 1, 1, 5001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig3A.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 5001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig3A.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig3B.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig3B.sedml/plot1, shape: (2, 1, 1, 12001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig3B.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 12001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig3B.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig3C.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig3C.sedml/plot1, shape: (2, 1, 1, 12001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig3C.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 12001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig3C.sedml/plot1\nwrite_dataset src: /Weinstein_2000_AE1_Fig3D.sedml/plot1 to tgt: /Weinstein_2000_AE1_Fig3D.sedml/plot1, shape: (2, 1, 1, 12001), type: float64\niterating over chunks for /Weinstein_2000_AE1_Fig3D.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 12001, 1))\ndone with dataload for /Weinstein_2000_AE1_Fig3D.sedml/plot1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6261742f4679625b3246e3a2\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":22.074853,"sedDocuments":[{"location":"Weinstein_2000_AE1_Fig3A.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.566226,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.701772,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.395082,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.275932,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig2D.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2D.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":3.783803,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.465372,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.443649,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":2.661096,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig3B.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3B.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.405465,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.393187,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.391274,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.400769,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig2A.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2A.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.290877,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.386095,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.38378,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.220805,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig3D.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3D.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.456349,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.393497,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.393138,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.397354,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig2E.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2E.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":3.41529,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.439288,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.437567,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":2.250944,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig2F.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2F.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":2.558381,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.418806,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.415992,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":1.415462,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig3C.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig3C.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.46004,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.389379,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.386221,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.362441,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig2C.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2C.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.706979,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.394033,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.394319,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.575041,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"Weinstein_2000_AE1_Fig2B.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Model `model` may be invalid.\n - The model file `Weinstein_2000_AE1_Fig2B.cellml` may be invalid.\n - Validation is not available for CellML 1.1 files.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n Found 2 tasks and 1 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 1 outputs ...\n Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 1 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 1\n Skipped: 0\n Failed: 0\n","duration":1.868777,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.402101,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.394576,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.711236,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]}]}