{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    476      0 --:--:-- --:--:-- --:--:--   477\n\r100  444k  100  444k    0     0  1028k      0 --:--:-- --:--:-- --:--:-- 1028k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\nTraceback (most recent call last):\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 247, in <module>\n    if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 213, in update_paths\n    update_scripts(scripts_dir, new_path, clear_args, extra_args)\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 125, in update_scripts\n    update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)\n  File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 118, in update_script\n    with open(script_filename, 'w') as f:\nOSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive may be invalid.\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\n  - The SED-ML file at location `benson_endocardial_2008_Fig3a_2000CL.sedml` may be invalid.\n    - Output `plot1` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - The SED-ML file at location `benson_mcell_2008_Fig3b_2000CL.sedml` may be invalid.\n    - Output `plot1` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - The SED-ML file at location `benson_endocardial_2008_Fig3b_2000CL.sedml` may be invalid.\n    - Output `plot1` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - The SED-ML file at location `benson_epicardial_2008_Fig3a_2000CL.sedml` may be invalid.\n    - Output `plot1` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - The SED-ML file at location `benson_mcell_2008_Fig3a_2000CL.sedml` may be invalid.\n    - Output `plot1` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n  - The SED-ML file at location `benson_epicardial_2008_Fig3b_2000CL.sedml` may be invalid.\n    - Output `plot1` may be invalid.\n      - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\nArchive contains 6 SED-ML documents with 6 models, 6 simulations, 12 tasks, 0 reports, and 6 plots:\n  benson_endocardial_2008_Fig3a_2000CL.sedml:\n    Tasks (2):\n      repeatedTask\n      task1\n    Plots (1):\n      plot1: 1 curves\n  benson_endocardial_2008_Fig3b_2000CL.sedml:\n    Tasks (2):\n      repeatedTask\n      task1\n    Plots (1):\n      plot1: 1 curves\n  benson_epicardial_2008_Fig3a_2000CL.sedml:\n    Tasks (2):\n      repeatedTask\n      task1\n    Plots (1):\n      plot1: 1 curves\n  benson_epicardial_2008_Fig3b_2000CL.sedml:\n    Tasks (2):\n      repeatedTask\n      task1\n    Plots (1):\n      plot1: 1 curves\n  benson_mcell_2008_Fig3a_2000CL.sedml:\n    Tasks (2):\n      repeatedTask\n      task1\n    Plots (1):\n      plot1: 1 curves\n  benson_mcell_2008_Fig3b_2000CL.sedml:\n    Tasks (2):\n      repeatedTask\n      task1\n    Plots (1):\n      plot1: 1 curves\n\nExecuting SED-ML file 1: benson_endocardial_2008_Fig3a_2000CL.sedml ...\nExecuting SED-ML file 2: benson_mcell_2008_Fig3b_2000CL.sedml ...\nExecuting SED-ML file 3: benson_endocardial_2008_Fig3b_2000CL.sedml ...\nExecuting SED-ML file 4: benson_epicardial_2008_Fig3a_2000CL.sedml ...\nExecuting SED-ML file 5: benson_mcell_2008_Fig3a_2000CL.sedml ...\nExecuting SED-ML file 6: benson_epicardial_2008_Fig3b_2000CL.sedml ...\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 6 SED documents:\n  SED documents (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n  Tasks (12):\n    Succeeded: 12\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 6.5 KiB/6.5 KiB (83.3 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/rawLog.txt\nCompleted 26.1 KiB/26.1 KiB (292.9 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/benson_mcell_2008_Fig3b_2000CL.sedml/ (stored 0%)\n  adding: outputs/benson_mcell_2008_Fig3b_2000CL.sedml/plot1.pdf (deflated 30%)\n  adding: outputs/log.yml (deflated 93%)\n  adding: outputs/benson_endocardial_2008_Fig3a_2000CL.sedml/ (stored 0%)\n  adding: outputs/benson_endocardial_2008_Fig3a_2000CL.sedml/plot1.pdf (deflated 31%)\n  adding: outputs/benson_endocardial_2008_Fig3b_2000CL.sedml/ (stored 0%)\n  adding: outputs/benson_endocardial_2008_Fig3b_2000CL.sedml/plot1.pdf (deflated 31%)\n  adding: outputs/benson_epicardial_2008_Fig3a_2000CL.sedml/ (stored 0%)\n  adding: outputs/benson_epicardial_2008_Fig3a_2000CL.sedml/plot1.pdf (deflated 30%)\n  adding: outputs/benson_mcell_2008_Fig3a_2000CL.sedml/ (stored 0%)\n  adding: outputs/benson_mcell_2008_Fig3a_2000CL.sedml/plot1.pdf (deflated 30%)\n  adding: outputs/benson_epicardial_2008_Fig3b_2000CL.sedml/ (stored 0%)\n  adding: outputs/benson_epicardial_2008_Fig3b_2000CL.sedml/plot1.pdf (deflated 30%)\n  adding: outputs/reports.h5 (deflated 74%)\n  adding: rawLog.txt (deflated 80%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 89.2 KiB/89.2 KiB (618.2 KiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/reports.h5\nCompleted 10.4 KiB/187.8 KiB (84.2 KiB/s) with 9 file(s) remaining\rupload: outputs/benson_endocardial_2008_Fig3b_2000CL.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/benson_endocardial_2008_Fig3b_2000CL.sedml/plot1.pdf\nCompleted 10.4 KiB/187.8 KiB (84.2 KiB/s) with 8 file(s) remaining\rCompleted 84.3 KiB/187.8 KiB (579.6 KiB/s) with 8 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/output.zip\nCompleted 84.3 KiB/187.8 KiB (579.6 KiB/s) with 7 file(s) remaining\rCompleted 95.0 KiB/187.8 KiB (588.8 KiB/s) with 7 file(s) remaining\rupload: outputs/benson_mcell_2008_Fig3b_2000CL.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/benson_mcell_2008_Fig3b_2000CL.sedml/plot1.pdf\nCompleted 95.0 KiB/187.8 KiB (588.8 KiB/s) with 6 file(s) remaining\rCompleted 105.5 KiB/187.8 KiB (618.8 KiB/s) with 6 file(s) remaining\rupload: outputs/benson_epicardial_2008_Fig3a_2000CL.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/benson_epicardial_2008_Fig3a_2000CL.sedml/plot1.pdf\nCompleted 105.5 KiB/187.8 KiB (618.8 KiB/s) with 5 file(s) remaining\rCompleted 115.9 KiB/187.8 KiB (671.4 KiB/s) with 5 file(s) remaining\rupload: outputs/benson_mcell_2008_Fig3a_2000CL.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/benson_mcell_2008_Fig3a_2000CL.sedml/plot1.pdf\nCompleted 115.9 KiB/187.8 KiB (671.4 KiB/s) with 4 file(s) remaining\rCompleted 126.1 KiB/187.8 KiB (700.4 KiB/s) with 4 file(s) remaining\rupload: outputs/benson_endocardial_2008_Fig3a_2000CL.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/benson_endocardial_2008_Fig3a_2000CL.sedml/plot1.pdf\nCompleted 126.1 KiB/187.8 KiB (700.4 KiB/s) with 3 file(s) remaining\rCompleted 168.8 KiB/187.8 KiB (767.3 KiB/s) with 3 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/plots.zip\nCompleted 168.8 KiB/187.8 KiB (767.3 KiB/s) with 2 file(s) remaining\rCompleted 177.1 KiB/187.8 KiB (571.1 KiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/rawLog.txt\nCompleted 177.1 KiB/187.8 KiB (571.1 KiB/s) with 1 file(s) remaining\rCompleted 187.8 KiB/187.8 KiB (487.9 KiB/s) with 1 file(s) remaining\rupload: outputs/benson_epicardial_2008_Fig3b_2000CL.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/outputs/benson_epicardial_2008_Fig3b_2000CL.sedml/plot1.pdf\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/benson_endocardial_2008_Fig3a_2000CL.sedml  \n  inflating: contents/benson_mcell_2008.cellml  \n  inflating: contents/benson_mcell_2008_Fig3b_2000CL.sedml  \n  inflating: contents/benson_endocardial_2008_Fig3b_2000CL.sedml  \n  inflating: contents/benson_endocardial_2008.cellml  \n  inflating: contents/benson_epicardial_2008_Fig3a_2000CL.sedml  \n  inflating: contents/benson_mcell_2008_Fig3a_2000CL.sedml  \n  inflating: contents/hund_2004.ai   \n  inflating: contents/benson_epicardial_2008_Fig3b_2000CL.sedml  \n  inflating: contents/benson_epicardial_2008.session.xml  \n  inflating: contents/hund_2004.png  \n  inflating: contents/benson_epicardial_2008.cellml  \n  inflating: contents/hund_2004.svg  \n  inflating: contents/hund_2004.xul  \n  inflating: contents/metadata.rdf   \n  inflating: contents/manifest.xml   \nCompleted 3.2 KiB/1.7 MiB (24.9 KiB/s) with 16 file(s) remaining\rupload: contents/benson_endocardial_2008_Fig3b_2000CL.sedml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_endocardial_2008_Fig3b_2000CL.sedml\nCompleted 3.2 KiB/1.7 MiB (24.9 KiB/s) with 15 file(s) remaining\rCompleted 161.8 KiB/1.7 MiB (1.1 MiB/s) with 15 file(s) remaining\rupload: contents/benson_endocardial_2008.cellml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_endocardial_2008.cellml\nCompleted 161.8 KiB/1.7 MiB (1.1 MiB/s) with 14 file(s) remaining\rCompleted 417.8 KiB/1.7 MiB (2.9 MiB/s) with 14 file(s) remaining\rCompleted 673.8 KiB/1.7 MiB (3.9 MiB/s) with 14 file(s) remaining\rCompleted 929.8 KiB/1.7 MiB (5.3 MiB/s) with 14 file(s) remaining\rCompleted 1.1 MiB/1.7 MiB (5.6 MiB/s) with 14 file(s) remaining  \rupload: contents/benson_epicardial_2008.cellml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_epicardial_2008.cellml\nCompleted 1.1 MiB/1.7 MiB (5.6 MiB/s) with 13 file(s) remaining\rCompleted 1.2 MiB/1.7 MiB (6.3 MiB/s) with 13 file(s) remaining\rupload: contents/benson_mcell_2008.cellml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_mcell_2008.cellml\nCompleted 1.2 MiB/1.7 MiB (6.3 MiB/s) with 12 file(s) remaining\rCompleted 1.2 MiB/1.7 MiB (5.7 MiB/s) with 12 file(s) remaining\rupload: contents/benson_mcell_2008_Fig3a_2000CL.sedml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_mcell_2008_Fig3a_2000CL.sedml\nCompleted 1.2 MiB/1.7 MiB (5.7 MiB/s) with 11 file(s) remaining\rCompleted 1.2 MiB/1.7 MiB (5.5 MiB/s) with 11 file(s) remaining\rupload: contents/benson_mcell_2008_Fig3b_2000CL.sedml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_mcell_2008_Fig3b_2000CL.sedml\nCompleted 1.2 MiB/1.7 MiB (5.5 MiB/s) with 10 file(s) remaining\rCompleted 1.2 MiB/1.7 MiB (5.4 MiB/s) with 10 file(s) remaining\rupload: contents/hund_2004.ai to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/hund_2004.ai\nCompleted 1.2 MiB/1.7 MiB (5.4 MiB/s) with 9 file(s) remaining\rCompleted 1.4 MiB/1.7 MiB (5.9 MiB/s) with 9 file(s) remaining\rupload: contents/hund_2004.svg to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/hund_2004.svg\nCompleted 1.4 MiB/1.7 MiB (5.9 MiB/s) with 8 file(s) remaining\rCompleted 1.5 MiB/1.7 MiB (6.1 MiB/s) with 8 file(s) remaining\rupload: contents/hund_2004.png to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/hund_2004.png\nCompleted 1.5 MiB/1.7 MiB (6.1 MiB/s) with 7 file(s) remaining\rCompleted 1.5 MiB/1.7 MiB (6.2 MiB/s) with 7 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/metadata.rdf\nCompleted 1.5 MiB/1.7 MiB (6.2 MiB/s) with 6 file(s) remaining\rCompleted 1.6 MiB/1.7 MiB (6.5 MiB/s) with 6 file(s) remaining\rupload: contents/hund_2004.xul to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/hund_2004.xul\nCompleted 1.6 MiB/1.7 MiB (6.5 MiB/s) with 5 file(s) remaining\rCompleted 1.6 MiB/1.7 MiB (6.0 MiB/s) with 5 file(s) remaining\rupload: contents/benson_endocardial_2008_Fig3a_2000CL.sedml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_endocardial_2008_Fig3a_2000CL.sedml\nCompleted 1.6 MiB/1.7 MiB (6.0 MiB/s) with 4 file(s) remaining\rCompleted 1.6 MiB/1.7 MiB (6.0 MiB/s) with 4 file(s) remaining\rupload: contents/benson_epicardial_2008_Fig3b_2000CL.sedml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_epicardial_2008_Fig3b_2000CL.sedml\nCompleted 1.6 MiB/1.7 MiB (6.0 MiB/s) with 3 file(s) remaining\rCompleted 1.6 MiB/1.7 MiB (5.9 MiB/s) with 3 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/manifest.xml\nCompleted 1.6 MiB/1.7 MiB (5.9 MiB/s) with 2 file(s) remaining\rCompleted 1.7 MiB/1.7 MiB (5.2 MiB/s) with 2 file(s) remaining\rupload: contents/benson_epicardial_2008.session.xml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_epicardial_2008.session.xml\nCompleted 1.7 MiB/1.7 MiB (5.2 MiB/s) with 1 file(s) remaining\rCompleted 1.7 MiB/1.7 MiB (5.0 MiB/s) with 1 file(s) remaining\rupload: contents/benson_epicardial_2008_Fig3a_2000CL.sedml to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/contents/benson_epicardial_2008_Fig3a_2000CL.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 16.5 KiB/16.5 KiB (169.7 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/626173d7abe612c540c67a03/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /benson_endocardial_2008_Fig3a_2000CL.sedml\ncreating dataset /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\ndataset created, uuid: d-c2228da2-d2e22dc6-71a1-cb271d-9f4dda, chunk_size: (2, 1, 1, 401)\ncreating group /benson_endocardial_2008_Fig3b_2000CL.sedml\ncreating dataset /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\ndataset created, uuid: d-c2228da2-d2e22dc6-ca5c-1a0dc3-26a6ac, chunk_size: (2, 1, 1, 401)\ncreating group /benson_epicardial_2008_Fig3a_2000CL.sedml\ncreating dataset /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\ndataset created, uuid: d-c2228da2-d2e22dc6-873a-b3ec76-218e82, chunk_size: (2, 1, 1, 401)\ncreating group /benson_epicardial_2008_Fig3b_2000CL.sedml\ncreating dataset /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\ndataset created, uuid: d-c2228da2-d2e22dc6-373b-7c8767-7f4d68, chunk_size: (2, 1, 1, 401)\ncreating group /benson_mcell_2008_Fig3a_2000CL.sedml\ncreating dataset /benson_mcell_2008_Fig3a_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\ndataset created, uuid: d-c2228da2-d2e22dc6-4db6-a7fb67-1ce5ac, chunk_size: (2, 1, 1, 401)\ncreating group /benson_mcell_2008_Fig3b_2000CL.sedml\ncreating dataset /benson_mcell_2008_Fig3b_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\ndataset created, uuid: d-c2228da2-d2e22dc6-cffa-7673ad-1f837c, chunk_size: (2, 1, 1, 401)\ncreating attribute combineArchiveLocation in /benson_endocardial_2008_Fig3a_2000CL.sedml\ncreating attribute uri in /benson_endocardial_2008_Fig3a_2000CL.sedml\ncreating attribute _type in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetIds in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetLabels in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetNames in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetShapes in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlId in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute uri in /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute combineArchiveLocation in /benson_endocardial_2008_Fig3b_2000CL.sedml\ncreating attribute uri in /benson_endocardial_2008_Fig3b_2000CL.sedml\ncreating attribute _type in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetIds in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetLabels in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetNames in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetShapes in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlId in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute uri in /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute combineArchiveLocation in /benson_epicardial_2008_Fig3a_2000CL.sedml\ncreating attribute uri in /benson_epicardial_2008_Fig3a_2000CL.sedml\ncreating attribute _type in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetIds in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetLabels in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetNames in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetShapes in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlId in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute uri in /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute combineArchiveLocation in /benson_epicardial_2008_Fig3b_2000CL.sedml\ncreating attribute uri in /benson_epicardial_2008_Fig3b_2000CL.sedml\ncreating attribute _type in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetIds in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetLabels in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetNames in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetShapes in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlId in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute uri in /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute combineArchiveLocation in /benson_mcell_2008_Fig3a_2000CL.sedml\ncreating attribute uri in /benson_mcell_2008_Fig3a_2000CL.sedml\ncreating attribute _type in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetIds in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetLabels in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetNames in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlDataSetShapes in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute sedmlId in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute uri in /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\ncreating attribute combineArchiveLocation in /benson_mcell_2008_Fig3b_2000CL.sedml\ncreating attribute uri in /benson_mcell_2008_Fig3b_2000CL.sedml\ncreating attribute _type in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetIds in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetLabels in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetNames in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlDataSetShapes in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute sedmlId in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreating attribute uri in /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\ncreate_links: /\ngot link: benson_endocardial_2008_Fig3a_2000CL.sedml\ngot link: benson_endocardial_2008_Fig3b_2000CL.sedml\ngot link: benson_epicardial_2008_Fig3a_2000CL.sedml\ngot link: benson_epicardial_2008_Fig3b_2000CL.sedml\ngot link: benson_mcell_2008_Fig3a_2000CL.sedml\ngot link: benson_mcell_2008_Fig3b_2000CL.sedml\ncreate_links: /benson_endocardial_2008_Fig3a_2000CL.sedml\ngot link: plot1\ncreate_links: /benson_endocardial_2008_Fig3b_2000CL.sedml\ngot link: plot1\ncreate_links: /benson_epicardial_2008_Fig3a_2000CL.sedml\ngot link: plot1\ncreate_links: /benson_epicardial_2008_Fig3b_2000CL.sedml\ngot link: plot1\ncreate_links: /benson_mcell_2008_Fig3a_2000CL.sedml\ngot link: plot1\ncreate_links: /benson_mcell_2008_Fig3b_2000CL.sedml\ngot link: plot1\nwrite_dataset src: /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1 to tgt: /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\niterating over chunks for /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 401, 1))\ndone with dataload for /benson_endocardial_2008_Fig3a_2000CL.sedml/plot1\nwrite_dataset src: /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1 to tgt: /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\niterating over chunks for /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 401, 1))\ndone with dataload for /benson_endocardial_2008_Fig3b_2000CL.sedml/plot1\nwrite_dataset src: /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1 to tgt: /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\niterating over chunks for /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 401, 1))\ndone with dataload for /benson_epicardial_2008_Fig3a_2000CL.sedml/plot1\nwrite_dataset src: /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1 to tgt: /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\niterating over chunks for /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 401, 1))\ndone with dataload for /benson_epicardial_2008_Fig3b_2000CL.sedml/plot1\nwrite_dataset src: /benson_mcell_2008_Fig3a_2000CL.sedml/plot1 to tgt: /benson_mcell_2008_Fig3a_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\niterating over chunks for /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 401, 1))\ndone with dataload for /benson_mcell_2008_Fig3a_2000CL.sedml/plot1\nwrite_dataset src: /benson_mcell_2008_Fig3b_2000CL.sedml/plot1 to tgt: /benson_mcell_2008_Fig3b_2000CL.sedml/plot1, shape: (2, 1, 1, 401), type: float64\niterating over chunks for /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 401, 1))\ndone with dataload for /benson_mcell_2008_Fig3b_2000CL.sedml/plot1\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/626173d7abe612c540c67a03\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":10.297608,"sedDocuments":[{"location":"benson_endocardial_2008_Fig3a_2000CL.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"  Found 2 tasks and 1 outputs:\n    Tasks:\n      `repeatedTask`\n      `task1`\n    Outputs:\n      `plot1`\n  Executing task 1: `repeatedTask`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n  Executing task 2: `task1`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n  Executed 2 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":1.616079,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.786766,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.538719,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.120804,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"benson_mcell_2008_Fig3b_2000CL.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n  Found 2 tasks and 1 outputs:\n    Tasks:\n      `repeatedTask`\n      `task1`\n    Outputs:\n      `plot1`\n  Executing task 1: `repeatedTask`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n  Executing task 2: `task1`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n  Executed 2 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":1.372048,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.534608,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.545865,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.099465,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"benson_endocardial_2008_Fig3b_2000CL.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n  Found 2 tasks and 1 outputs:\n    Tasks:\n      `repeatedTask`\n      `task1`\n    Outputs:\n      `plot1`\n  Executing task 1: `repeatedTask`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n  Executing task 2: `task1`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n  Executed 2 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":1.431282,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.554291,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.544202,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.111177,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"benson_epicardial_2008_Fig3a_2000CL.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n  Found 2 tasks and 1 outputs:\n    Tasks:\n      `repeatedTask`\n      `task1`\n    Outputs:\n      `plot1`\n  Executing task 1: `repeatedTask`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n  Executing task 2: `task1`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n  Executed 2 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":1.501211,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `yVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.568488,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.565118,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.111639,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"benson_mcell_2008_Fig3a_2000CL.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n  Found 2 tasks and 1 outputs:\n    Tasks:\n      `repeatedTask`\n      `task1`\n    Outputs:\n      `plot1`\n  Executing task 1: `repeatedTask`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n  Executing task 2: `task1`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n  Executed 2 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":1.628525,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.578146,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.564151,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.186203,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]},{"location":"benson_epicardial_2008_Fig3b_2000CL.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - Output `plot1` may be invalid.\n    - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n  Found 2 tasks and 1 outputs:\n    Tasks:\n      `repeatedTask`\n      `task1`\n    Outputs:\n      `plot1`\n  Executing task 1: `repeatedTask`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n  Executing task 2: `task1`\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\n    Generating 1 outputs ...\n      Generating output 1: `plot1` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n  Executed 2 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n","duration":1.58976,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `xVariable1_1` may be invalid.\n  - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n  - XPath could not be validated.\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.575161,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n  - The following tasks do not contribute to outputs:\n    - `repeatedTask`\n    - `task1`\u001b[0m\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.567053,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":"9.9999999999999995e-08"},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.130641,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]}]}]}