{"status":"SUCCEEDED","exception":null,"skipReason":null,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m=================================================== Set up storage ==================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n % Total % Received % Xferd Average Speed Time Time Time Current\n Dload Upload Total Spent Left Speed\n\r 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0\r100 139 100 139 0 0 441 0 --:--:-- --:--:-- --:--:-- 442\n\r100 764k 100 764k 0 0 1664k 0 --:--:-- --:--:-- --:--:-- 1664k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO: Using cached SIF image\nTraceback (most recent call last):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 247, in \n if not update_paths(args.path, args.scripts_dir, args.clear_args, args.extra_args):\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 213, in update_paths\n update_scripts(scripts_dir, new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 125, in update_scripts\n update_script(os.path.join(bin_dir, fn), new_path, clear_args, extra_args)\n File \"/home/opencor/OpenCOR/bin/../python/bin/set_python_path.py\", line 118, in update_script\n with open(script_filename, 'w') as f:\nOSError: [Errno 30] Read-only file system: '/home/opencor/OpenCOR/bin/../python/bin/biosimulators-utils'\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive may be invalid.\n - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - Output `plot2` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - Output `plot3` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - Output `plot4` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive may be invalid.\n - The SED-ML file at location `bagci_2008a_Fig3.sedml` may be invalid.\n - Output `plot1` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - Output `plot2` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - Output `plot3` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\n - Output `plot4` may be invalid.\n - Some simulation tools will not be able to generate this output because it uses data from repeated tasks. Output for repeated tasks is an experimental feature of SED-ML, which is not officially supported.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\nArchive contains 1 SED-ML documents with 1 models, 1 simulations, 2 tasks, 0 reports, and 4 plots:\n bagci_2008a_Fig3.sedml:\n Tasks (2):\n repeatedTask\n task1\n Plots (4):\n plot1: 1 curves\n plot2: 1 curves\n plot3: 1 curves\n plot4: 1 curves\n\nExecuting SED-ML file 1: bagci_2008a_Fig3.sedml ...\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n SED documents (1):\n Succeeded: 1\n Skipped: 0\n Failed: 0\n Tasks (2):\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs (4):\n Succeeded: 4\n Skipped: 0\n Failed: 0\n\n\n\u001b[0;36m===================================================== Saving log ====================================================\u001b[0m\nCompleted 5.3 KiB/5.3 KiB (42.5 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/rawLog.txt\nCompleted 8.5 KiB/8.5 KiB (101.3 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/outputs/log.yml\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n adding: outputs/ (stored 0%)\n adding: outputs/log.yml (deflated 82%)\n adding: outputs/bagci_2008a_Fig3.sedml/ (stored 0%)\n adding: outputs/bagci_2008a_Fig3.sedml/plot3.pdf (deflated 33%)\n adding: outputs/bagci_2008a_Fig3.sedml/plot4.pdf (deflated 33%)\n adding: outputs/bagci_2008a_Fig3.sedml/plot2.pdf (deflated 33%)\n adding: outputs/bagci_2008a_Fig3.sedml/plot1.pdf (deflated 32%)\n adding: outputs/reports.h5 (deflated 14%)\n adding: rawLog.txt (deflated 77%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 256.0 KiB/638.4 KiB (6.0 MiB/s) with 1 file(s) remaining\rCompleted 512.0 KiB/638.4 KiB (10.3 MiB/s) with 1 file(s) remaining\rCompleted 638.4 KiB/638.4 KiB (5.3 MiB/s) with 1 file(s) remaining \rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/outputs/reports.h5\nCompleted 256.0 KiB/645.9 KiB (5.5 MiB/s) with 7 file(s) remaining\rCompleted 512.0 KiB/645.9 KiB (9.0 MiB/s) with 7 file(s) remaining\rCompleted 520.5 KiB/645.9 KiB (3.9 MiB/s) with 7 file(s) remaining\rupload: outputs/bagci_2008a_Fig3.sedml/plot2.pdf to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/outputs/bagci_2008a_Fig3.sedml/plot2.pdf\nCompleted 520.5 KiB/645.9 KiB (3.9 MiB/s) with 6 file(s) remaining\rCompleted 529.6 KiB/645.9 KiB (3.8 MiB/s) with 6 file(s) remaining\rupload: outputs/bagci_2008a_Fig3.sedml/plot1.pdf to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/outputs/bagci_2008a_Fig3.sedml/plot1.pdf\nCompleted 529.6 KiB/645.9 KiB (3.8 MiB/s) with 5 file(s) remaining\rCompleted 553.0 KiB/645.9 KiB (3.6 MiB/s) with 5 file(s) remaining\rCompleted 562.2 KiB/645.9 KiB (3.6 MiB/s) with 5 file(s) remaining\rupload: outputs/bagci_2008a_Fig3.sedml/plot4.pdf to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/outputs/bagci_2008a_Fig3.sedml/plot4.pdf\nCompleted 562.2 KiB/645.9 KiB (3.6 MiB/s) with 4 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/outputs/plots.zip\nCompleted 562.2 KiB/645.9 KiB (3.6 MiB/s) with 3 file(s) remaining\rCompleted 630.3 KiB/645.9 KiB (3.8 MiB/s) with 3 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/output.zip\nCompleted 630.3 KiB/645.9 KiB (3.8 MiB/s) with 2 file(s) remaining\rCompleted 639.2 KiB/645.9 KiB (3.3 MiB/s) with 2 file(s) remaining\rupload: outputs/bagci_2008a_Fig3.sedml/plot3.pdf to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/outputs/bagci_2008a_Fig3.sedml/plot3.pdf\nCompleted 639.2 KiB/645.9 KiB (3.3 MiB/s) with 1 file(s) remaining\rCompleted 645.9 KiB/645.9 KiB (2.7 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/rawLog.txt\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive: archive.omex\n inflating: contents/bagci_2008a_Fig3.sedml \n inflating: contents/bagci_2008b.cellml \n inflating: contents/bagci_2008a.cellml \n inflating: contents/bagci_2008a.xul \n inflating: contents/bagci_2008a.png \n inflating: contents/bagci_2008a.session.xml \n inflating: contents/bagci_2008a.ai \n inflating: contents/bagci_2008b.ai \n inflating: contents/bagci_2008a.svg \n inflating: contents/bagci_2008b.png \n inflating: contents/bagci_2008b.svg \n inflating: contents/metadata.rdf \n inflating: contents/manifest.xml \nCompleted 38.1 KiB/1.3 MiB (470.2 KiB/s) with 13 file(s) remaining\rupload: contents/bagci_2008a.cellml to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008a.cellml\nCompleted 38.1 KiB/1.3 MiB (470.2 KiB/s) with 12 file(s) remaining\rCompleted 294.1 KiB/1.3 MiB (3.1 MiB/s) with 12 file(s) remaining \rCompleted 320.4 KiB/1.3 MiB (1.9 MiB/s) with 12 file(s) remaining \rupload: contents/bagci_2008a.session.xml to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008a.session.xml\nCompleted 320.4 KiB/1.3 MiB (1.9 MiB/s) with 11 file(s) remaining\rCompleted 378.2 KiB/1.3 MiB (2.2 MiB/s) with 11 file(s) remaining\rupload: contents/bagci_2008a.png to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008a.png\nCompleted 378.2 KiB/1.3 MiB (2.2 MiB/s) with 10 file(s) remaining\rCompleted 604.3 KiB/1.3 MiB (3.3 MiB/s) with 10 file(s) remaining\rupload: contents/bagci_2008b.svg to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008b.svg\nCompleted 604.3 KiB/1.3 MiB (3.3 MiB/s) with 9 file(s) remaining\rCompleted 648.4 KiB/1.3 MiB (3.4 MiB/s) with 9 file(s) remaining\rupload: contents/bagci_2008a.ai to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008a.ai\nCompleted 648.4 KiB/1.3 MiB (3.4 MiB/s) with 8 file(s) remaining\rCompleted 768.8 KiB/1.3 MiB (4.0 MiB/s) with 8 file(s) remaining\rupload: contents/bagci_2008b.cellml to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008b.cellml\nCompleted 768.8 KiB/1.3 MiB (4.0 MiB/s) with 7 file(s) remaining\rCompleted 821.2 KiB/1.3 MiB (4.3 MiB/s) with 7 file(s) remaining\rupload: contents/bagci_2008a.xul to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008a.xul\nCompleted 821.2 KiB/1.3 MiB (4.3 MiB/s) with 6 file(s) remaining\rCompleted 822.7 KiB/1.3 MiB (4.1 MiB/s) with 6 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/manifest.xml\nCompleted 822.7 KiB/1.3 MiB (4.1 MiB/s) with 5 file(s) remaining\rCompleted 935.1 KiB/1.3 MiB (4.6 MiB/s) with 5 file(s) remaining\rupload: contents/bagci_2008b.png to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008b.png\nCompleted 935.1 KiB/1.3 MiB (4.6 MiB/s) with 4 file(s) remaining\rCompleted 1.2 MiB/1.3 MiB (5.6 MiB/s) with 4 file(s) remaining \rCompleted 1.2 MiB/1.3 MiB (4.5 MiB/s) with 4 file(s) remaining \rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/metadata.rdf\nCompleted 1.2 MiB/1.3 MiB (4.5 MiB/s) with 3 file(s) remaining\rCompleted 1.3 MiB/1.3 MiB (4.6 MiB/s) with 3 file(s) remaining\rupload: contents/bagci_2008b.ai to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008b.ai\nCompleted 1.3 MiB/1.3 MiB (4.6 MiB/s) with 2 file(s) remaining\rCompleted 1.3 MiB/1.3 MiB (4.6 MiB/s) with 2 file(s) remaining\rupload: contents/bagci_2008a.svg to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008a.svg\nCompleted 1.3 MiB/1.3 MiB (4.6 MiB/s) with 1 file(s) remaining\rCompleted 1.3 MiB/1.3 MiB (3.7 MiB/s) with 1 file(s) remaining\rupload: contents/bagci_2008a_Fig3.sedml to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/contents/bagci_2008a_Fig3.sedml\n\n\u001b[0;36m==================================================== Updating log ===================================================\u001b[0m\nCompleted 12.7 KiB/12.7 KiB (94.9 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/6261738f4679625b3246df84/rawLog.txt\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /bagci_2008a_Fig3.sedml\ncreating dataset /bagci_2008a_Fig3.sedml/plot1, shape: (2, 1, 1, 21601), type: float64\ndataset created, uuid: d-24f7c3db-472f43df-3b62-acef27-ef3f48, chunk_size: (2, 1, 1, 21601)\ncreating dataset /bagci_2008a_Fig3.sedml/plot2, shape: (2, 1, 1, 21601), type: float64\ndataset created, uuid: d-24f7c3db-472f43df-f988-8d2445-a6e7e4, chunk_size: (2, 1, 1, 21601)\ncreating dataset /bagci_2008a_Fig3.sedml/plot3, shape: (2, 1, 1, 21601), type: float64\ndataset created, uuid: d-24f7c3db-472f43df-2b98-b1eec1-af451c, chunk_size: (2, 1, 1, 21601)\ncreating dataset /bagci_2008a_Fig3.sedml/plot4, shape: (2, 1, 1, 21601), type: float64\ndataset created, uuid: d-24f7c3db-472f43df-d74c-784b49-4dd94d, chunk_size: (2, 1, 1, 21601)\ncreating attribute combineArchiveLocation in /bagci_2008a_Fig3.sedml\ncreating attribute uri in /bagci_2008a_Fig3.sedml\ncreating attribute _type in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute sedmlDataSetDataTypes in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute sedmlDataSetIds in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute sedmlDataSetLabels in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute sedmlDataSetNames in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute sedmlDataSetShapes in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute sedmlId in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute uri in /bagci_2008a_Fig3.sedml/plot1\ncreating attribute _type in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute sedmlDataSetDataTypes in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute sedmlDataSetIds in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute sedmlDataSetLabels in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute sedmlDataSetNames in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute sedmlDataSetShapes in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute sedmlId in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute uri in /bagci_2008a_Fig3.sedml/plot2\ncreating attribute _type in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute sedmlDataSetDataTypes in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute sedmlDataSetIds in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute sedmlDataSetLabels in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute sedmlDataSetNames in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute sedmlDataSetShapes in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute sedmlId in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute uri in /bagci_2008a_Fig3.sedml/plot3\ncreating attribute _type in /bagci_2008a_Fig3.sedml/plot4\ncreating attribute sedmlDataSetDataTypes in /bagci_2008a_Fig3.sedml/plot4\ncreating attribute sedmlDataSetIds in /bagci_2008a_Fig3.sedml/plot4\ncreating attribute sedmlDataSetLabels in /bagci_2008a_Fig3.sedml/plot4\ncreating attribute sedmlDataSetNames in /bagci_2008a_Fig3.sedml/plot4\ncreating attribute sedmlDataSetShapes in /bagci_2008a_Fig3.sedml/plot4\ncreating attribute sedmlId in /bagci_2008a_Fig3.sedml/plot4\ncreating attribute uri in /bagci_2008a_Fig3.sedml/plot4\ncreate_links: /\ngot link: bagci_2008a_Fig3.sedml\ncreate_links: /bagci_2008a_Fig3.sedml\ngot link: plot1\ngot link: plot2\ngot link: plot3\ngot link: plot4\nwrite_dataset src: /bagci_2008a_Fig3.sedml/plot1 to tgt: /bagci_2008a_Fig3.sedml/plot1, shape: (2, 1, 1, 21601), type: float64\niterating over chunks for /bagci_2008a_Fig3.sedml/plot1\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 21601, 1))\ndone with dataload for /bagci_2008a_Fig3.sedml/plot1\nwrite_dataset src: /bagci_2008a_Fig3.sedml/plot2 to tgt: /bagci_2008a_Fig3.sedml/plot2, shape: (2, 1, 1, 21601), type: float64\niterating over chunks for /bagci_2008a_Fig3.sedml/plot2\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 21601, 1))\ndone with dataload for /bagci_2008a_Fig3.sedml/plot2\nwrite_dataset src: /bagci_2008a_Fig3.sedml/plot3 to tgt: /bagci_2008a_Fig3.sedml/plot3, shape: (2, 1, 1, 21601), type: float64\niterating over chunks for /bagci_2008a_Fig3.sedml/plot3\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 21601, 1))\ndone with dataload for /bagci_2008a_Fig3.sedml/plot3\nwrite_dataset src: /bagci_2008a_Fig3.sedml/plot4 to tgt: /bagci_2008a_Fig3.sedml/plot4, shape: (2, 1, 1, 21601), type: float64\niterating over chunks for /bagci_2008a_Fig3.sedml/plot4\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1, 1), slice(0, 1, 1), slice(0, 21601, 1))\ndone with dataload for /bagci_2008a_Fig3.sedml/plot4\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/6261738f4679625b3246df84\n\n\u001b[0;36m================================================== Saving final log =================================================\u001b[0m\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","duration":5.506795,"sedDocuments":[{"location":"bagci_2008a_Fig3.sedml","status":"SUCCEEDED","exception":null,"skipReason":null,"output":" Found 2 tasks and 4 outputs:\n Tasks:\n `repeatedTask`\n `task1`\n Outputs:\n `plot1`\n `plot2`\n `plot3`\n `plot4`\n Executing task 1: `repeatedTask`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 4 outputs ...\n Generating output 1: `plot1` ... \u001b[34msucceeded\u001b[0m\n Generating output 2: `plot2` ... \u001b[34msucceeded\u001b[0m\n Generating output 3: `plot3` ... \u001b[34msucceeded\u001b[0m\n Generating output 4: `plot4` ... \u001b[34msucceeded\u001b[0m\n Executing task 2: `task1`\n Executing simulation ... \u001b[34msucceeded\u001b[0m\n Generating 4 outputs ...\n Generating output 1: `plot1` ... Generating output 2: `plot2` ... Generating output 3: `plot3` ... Generating output 4: `plot4` .../home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: NoOutputsWarning: \u001b[33mTask task1 does not contribute to any outputs.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n\n Executed 2 tasks and 4 outputs:\n Tasks:\n Succeeded: 2\n Skipped: 0\n Failed: 0\n Outputs:\n Succeeded: 4\n Skipped: 0\n Failed: 0\n","duration":4.953175,"tasks":[{"id":"repeatedTask","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33m- Variable `yVariable2_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable2_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable3_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable1_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable3_1` may be invalid.\n - XPath could not be validated.\n- Variable `xVariable4_1` may be invalid.\n - XPath could not be validated.\n- Variable `yVariable4_1` may be invalid.\n - XPath could not be validated.\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.743649,"algorithm":null,"simulatorDetails":null},{"id":"task1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"/home/opencor/OpenCOR/python/lib/python3.7/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\n - The following tasks do not contribute to outputs:\n - `repeatedTask`\n - `task1`\u001b[0m\n warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n","duration":0.434791,"algorithm":"KISAO_0000019","simulatorDetails":[{"key":"method","value":"OpenCOR.SimulationSupport.Simulation.run"},{"key":"algorithmParameters","value":[{"kisaoID":"KISAO_0000211","value":1e-7},{"kisaoID":"KISAO_0000475","value":"BDF"},{"kisaoID":"KISAO_0000481","value":"true"},{"kisaoID":"KISAO_0000476","value":"Newton"},{"kisaoID":"KISAO_0000477","value":"Dense"},{"kisaoID":"KISAO_0000480","value":"0"},{"kisaoID":"KISAO_0000415","value":"500"},{"kisaoID":"KISAO_0000467","value":"0"},{"kisaoID":"KISAO_0000478","value":"Banded"},{"kisaoID":"KISAO_0000209","value":1e-7},{"kisaoID":"KISAO_0000479","value":"0"}]}]}],"outputs":[{"id":"plot1","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.946868,"curves":[{"id":"curve1_1","status":"SUCCEEDED"}]},{"id":"plot2","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.920997,"curves":[{"id":"curve2_1","status":"SUCCEEDED"}]},{"id":"plot3","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.910097,"curves":[{"id":"curve3_1","status":"SUCCEEDED"}]},{"id":"plot4","status":"SUCCEEDED","exception":null,"skipReason":null,"output":"","duration":0.858382,"curves":[{"id":"curve4_1","status":"SUCCEEDED"}]}]}]}